Wall clock time and date at job start Tue Mar 31 2020 05:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47197 * 1 3 3 C 1.17406 * 179.97438 * 2 1 4 4 C 1.43195 * 179.97438 * 223.81989 * 3 2 1 5 5 C 1.39603 * 120.49961 * 82.64136 * 4 3 2 6 6 N 1.31723 * 120.82873 * 179.97438 * 5 4 3 7 7 C 1.31774 * 122.01348 * 359.97438 * 6 5 4 8 8 C 1.39391 * 120.90864 * 359.97438 * 7 6 5 9 9 C 1.48404 * 120.47190 * 180.02562 * 8 7 6 10 10 C 1.38664 * 120.01109 * 309.99497 * 9 8 7 11 11 C 1.40551 * 119.65620 * 179.97438 * 10 9 8 12 12 C 1.41347 * 120.15523 * 180.28102 * 11 10 9 13 13 H 1.07998 * 119.99925 * 154.73216 * 12 11 10 14 14 C 1.39898 * 119.99692 * 334.73867 * 12 11 10 15 15 N 1.30855 * 120.00097 * 342.53627 * 14 12 11 16 16 Si 1.86800 * 119.99671 * 162.54005 * 14 12 11 17 17 H 1.48495 * 109.47262 * 59.99712 * 16 14 12 18 18 H 1.48496 * 109.46882 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47261 * 299.99771 * 16 14 12 20 20 C 1.40843 * 119.68894 * 0.02562 * 11 10 9 21 21 C 1.37554 * 120.02044 * 359.97438 * 20 11 10 22 22 C 1.38762 * 120.34794 * 0.04270 * 21 20 11 23 23 F 1.35106 * 119.84362 * 179.97438 * 22 21 20 24 24 C 1.39532 * 119.06212 * 0.27473 * 8 7 6 25 25 H 1.09000 * 109.46695 * 233.54171 * 1 2 3 26 26 H 1.08997 * 109.47256 * 353.53772 * 1 2 3 27 27 H 1.08998 * 109.47249 * 113.54689 * 1 2 3 28 28 H 1.08001 * 119.58803 * 359.95192 * 5 4 3 29 29 H 1.08005 * 119.55109 * 179.97438 * 7 6 5 30 30 H 1.08003 * 120.17079 * 0.02930 * 10 9 8 31 31 H 0.97008 * 119.99691 * 180.02562 * 15 14 12 32 32 H 1.08003 * 119.99118 * 180.02562 * 20 11 10 33 33 H 1.07998 * 119.82990 * 180.02562 * 21 20 11 34 34 H 1.08000 * 120.90972 * 179.70416 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.0780 0.0016 0.0004 5 6 4.7870 -0.1519 -1.1923 6 7 6.1042 -0.1513 -1.1995 7 6 6.8087 -0.0072 -0.0952 8 6 6.1808 0.1529 1.1389 9 6 6.9838 0.3150 2.3764 10 6 8.0091 -0.5746 2.6594 11 6 8.7652 -0.4137 3.8332 12 6 9.8166 -1.3109 4.1292 13 1 10.6348 -0.9949 4.7593 14 6 9.7974 -2.6081 3.6056 15 7 8.6818 -3.1093 3.1401 16 14 11.3642 -3.6246 3.5711 17 1 11.8684 -3.8042 4.9562 18 1 11.0791 -4.9533 2.9724 19 1 12.3906 -2.9246 2.7576 20 6 8.4738 0.6488 4.7106 21 6 7.4537 1.5237 4.4170 22 6 6.7063 1.3658 3.2586 23 9 5.7063 2.2307 2.9805 24 6 4.7867 0.1533 1.1951 25 1 -0.3633 -0.6107 0.8266 26 1 -0.3633 1.0211 0.1157 27 1 -0.3634 -0.4105 -0.9421 28 1 4.2488 -0.2730 -2.1208 29 1 7.8875 -0.0131 -0.1471 30 1 8.2261 -1.3864 1.9809 31 1 8.6685 -4.0089 2.7774 32 1 9.0520 0.7773 5.6137 33 1 7.2332 2.3376 5.0917 34 1 4.2694 0.2702 2.1359 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242940337.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:32 Heat of formation + Delta-G solvation = 39.806785 kcal Electronic energy + Delta-G solvation = -19987.212778 eV Core-core repulsion = 16764.713151 eV Total energy + Delta-G solvation = -3222.499627 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -47.61965 -39.82686 -37.45807 -34.64490 -33.89092 -32.66202 -31.81704 -29.52687 -28.64550 -27.82064 -25.23659 -23.52332 -23.29596 -21.28998 -20.49507 -17.96175 -17.00020 -16.56592 -16.22646 -16.08833 -15.37800 -14.77955 -14.51798 -14.28575 -13.98334 -13.84943 -13.70523 -13.41049 -13.06722 -12.83098 -12.74121 -12.11812 -12.07355 -11.82848 -11.32027 -11.22090 -11.05562 -10.96511 -10.54519 -10.19309 -10.12569 -9.86158 -9.44025 -9.19704 -9.08882 -8.45950 -7.62965 -7.43548 -6.95766 -4.54684 0.97155 1.45772 2.48600 2.62950 2.66542 2.98595 2.99490 3.04000 3.12132 3.79898 4.12295 4.20526 4.38017 4.73070 5.14039 5.22420 5.30116 5.33136 5.41463 5.41868 5.45894 5.61978 5.66469 5.84487 5.98889 6.07790 6.36847 6.48180 6.55124 6.75414 6.88535 6.94226 7.02783 7.22486 7.49805 7.57357 7.60035 7.77976 7.97031 8.21256 8.33710 8.63411 8.66378 9.98429 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.018067 B = 0.004626 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.373830 B = 6051.932948 C = 6815.018840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 C -0.173 4.173 3 C -0.132 4.132 4 C -0.042 4.042 5 C 0.106 3.894 6 N -0.482 5.482 7 C 0.115 3.885 8 C -0.057 4.057 9 C -0.072 4.072 10 C -0.119 4.119 11 C 0.102 3.898 12 C -0.454 4.454 13 H 0.083 0.917 14 C 0.075 3.925 15 N -0.788 5.788 16 Si 0.911 3.089 17 H -0.264 1.264 18 H -0.277 1.277 19 H -0.261 1.261 20 C -0.198 4.198 21 C -0.116 4.116 22 C -0.032 4.032 23 F -0.169 7.169 24 C -0.040 4.040 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.154 0.846 29 H 0.161 0.839 30 H 0.131 0.869 31 H 0.285 0.715 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.749 2.165 -4.527 9.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.173 4.173 3 C -0.132 4.132 4 C -0.044 4.044 5 C -0.052 4.052 6 N -0.189 5.189 7 C -0.041 4.041 8 C -0.059 4.059 9 C -0.073 4.073 10 C -0.138 4.138 11 C 0.099 3.901 12 C -0.483 4.483 13 H 0.101 0.899 14 C -0.144 4.144 15 N -0.412 5.412 16 Si 0.735 3.265 17 H -0.189 1.189 18 H -0.202 1.202 19 H -0.186 1.186 20 C -0.218 4.218 21 C -0.135 4.135 22 C -0.052 4.052 23 F -0.148 7.148 24 C -0.065 4.065 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.171 0.829 29 H 0.178 0.822 30 H 0.149 0.851 31 H 0.096 0.904 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.435 1.857 -5.436 9.396 hybrid contribution -0.025 -0.325 0.900 0.957 sum -7.460 1.532 -4.536 8.865 Atomic orbital electron populations 1.18861 0.84185 1.03111 1.03116 1.22253 0.93668 1.00994 1.00386 1.18979 0.90818 1.01580 1.01867 1.16771 0.87265 1.05361 0.95009 1.22750 0.89859 0.96119 0.96425 1.67612 1.07496 1.12918 1.30900 1.23033 1.00495 0.93927 0.86648 1.19815 0.92895 0.98228 0.94920 1.18308 0.98810 0.97250 0.92971 1.21336 0.95699 0.98663 0.98131 1.17570 0.91598 0.91180 0.89742 1.19564 1.06123 0.95676 1.26942 0.89880 1.25957 0.97334 0.98417 0.92703 1.69789 1.26492 1.16305 1.28639 0.86297 0.81831 0.78527 0.79800 1.18862 1.20187 1.18572 1.20924 1.00627 0.99832 1.00408 1.20462 0.97377 1.00096 0.95525 1.17207 0.94303 0.94339 0.99318 1.91296 1.59998 1.69257 1.94234 1.21747 0.93234 0.94110 0.97445 0.90003 0.90056 0.90083 0.82921 0.82156 0.85101 0.90350 0.87722 0.87773 0.84675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.31 10.32 34.37 0.35 0.04 16 2 C -0.17 -2.34 14.13 -37.12 -0.52 -2.86 16 3 C -0.13 -2.10 13.27 -38.84 -0.52 -2.62 16 4 C -0.04 -0.73 5.73 -106.91 -0.61 -1.34 16 5 C 0.11 1.75 10.91 -17.09 -0.19 1.57 16 6 N -0.48 -8.72 10.33 -12.65 -0.13 -8.85 16 7 C 0.12 2.19 10.67 -17.15 -0.18 2.01 16 8 C -0.06 -1.16 5.31 -104.80 -0.56 -1.71 16 9 C -0.07 -1.62 5.49 -104.90 -0.58 -2.19 16 10 C -0.12 -2.86 8.14 -38.55 -0.31 -3.17 16 11 C 0.10 2.50 5.56 -106.86 -0.59 1.91 16 12 C -0.45 -11.07 9.04 -37.78 -0.34 -11.41 16 13 H 0.08 1.92 7.90 -52.49 -0.41 1.51 16 14 C 0.08 1.75 5.14 -17.35 -0.09 1.66 16 15 N -0.79 -19.10 10.98 55.54 0.61 -18.49 16 16 Si 0.91 17.47 29.59 -169.99 -5.03 12.44 16 17 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 18 H -0.28 -5.23 7.11 56.52 0.40 -4.83 16 19 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 20 C -0.20 -4.49 9.78 -38.85 -0.38 -4.87 16 21 C -0.12 -2.51 9.99 -39.64 -0.40 -2.90 16 22 C -0.03 -0.72 7.20 -38.74 -0.28 -1.00 16 23 F -0.17 -3.69 15.94 2.25 0.04 -3.66 16 24 C -0.04 -0.77 8.73 -38.54 -0.34 -1.10 16 25 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.15 2.04 8.06 -52.49 -0.42 1.62 16 29 H 0.16 2.84 8.04 -52.48 -0.42 2.42 16 30 H 0.13 3.23 6.17 -52.48 -0.32 2.90 16 31 H 0.29 6.37 8.30 -40.82 -0.34 6.03 16 32 H 0.10 2.18 8.06 -52.48 -0.42 1.75 16 33 H 0.10 1.99 8.06 -52.49 -0.42 1.56 16 34 H 0.14 2.58 7.86 -52.49 -0.41 2.17 16 LS Contribution 314.45 15.07 4.74 4.74 Total: -1.00 -26.89 314.45 -8.55 -35.44 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -3.24 Total: 6.38 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: -5.53 Total: -28.01 kcal Atomic # 7 Polarization: -27.82 SS G_CDS: 0.48 Total: -27.34 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.04 Total: -3.66 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -5.03 Total: 12.44 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -26.89 -8.55 -35.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242940337.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.251 kcal (2) G-P(sol) polarization free energy of solvation -26.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds