Wall clock time and date at job start Tue Mar 31 2020 05:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47197 * 1 3 3 C 1.17406 * 179.97438 * 2 1 4 4 C 1.43195 * 179.97438 * 223.81989 * 3 2 1 5 5 C 1.39603 * 120.49961 * 82.64136 * 4 3 2 6 6 N 1.31723 * 120.82873 * 179.97438 * 5 4 3 7 7 C 1.31774 * 122.01348 * 359.97438 * 6 5 4 8 8 C 1.39391 * 120.90864 * 359.97438 * 7 6 5 9 9 C 1.48404 * 120.47190 * 180.02562 * 8 7 6 10 10 C 1.38664 * 120.01109 * 309.99497 * 9 8 7 11 11 C 1.40551 * 119.65620 * 179.97438 * 10 9 8 12 12 C 1.41347 * 120.15523 * 180.28102 * 11 10 9 13 13 H 1.07998 * 119.99925 * 154.73216 * 12 11 10 14 14 C 1.39898 * 119.99692 * 334.73867 * 12 11 10 15 15 N 1.30855 * 120.00097 * 342.53627 * 14 12 11 16 16 Si 1.86800 * 119.99671 * 162.54005 * 14 12 11 17 17 H 1.48495 * 109.47262 * 59.99712 * 16 14 12 18 18 H 1.48496 * 109.46882 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47261 * 299.99771 * 16 14 12 20 20 C 1.40843 * 119.68894 * 0.02562 * 11 10 9 21 21 C 1.37554 * 120.02044 * 359.97438 * 20 11 10 22 22 C 1.38762 * 120.34794 * 0.04270 * 21 20 11 23 23 F 1.35106 * 119.84362 * 179.97438 * 22 21 20 24 24 C 1.39532 * 119.06212 * 0.27473 * 8 7 6 25 25 H 1.09000 * 109.46695 * 233.54171 * 1 2 3 26 26 H 1.08997 * 109.47256 * 353.53772 * 1 2 3 27 27 H 1.08998 * 109.47249 * 113.54689 * 1 2 3 28 28 H 1.08001 * 119.58803 * 359.95192 * 5 4 3 29 29 H 1.08005 * 119.55109 * 179.97438 * 7 6 5 30 30 H 1.08003 * 120.17079 * 0.02930 * 10 9 8 31 31 H 0.97008 * 119.99691 * 180.02562 * 15 14 12 32 32 H 1.08003 * 119.99118 * 180.02562 * 20 11 10 33 33 H 1.07998 * 119.82990 * 180.02562 * 21 20 11 34 34 H 1.08000 * 120.90972 * 179.70416 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.0780 0.0016 0.0004 5 6 4.7870 -0.1519 -1.1923 6 7 6.1042 -0.1513 -1.1995 7 6 6.8087 -0.0072 -0.0952 8 6 6.1808 0.1529 1.1389 9 6 6.9838 0.3150 2.3764 10 6 8.0091 -0.5746 2.6594 11 6 8.7652 -0.4137 3.8332 12 6 9.8166 -1.3109 4.1292 13 1 10.6348 -0.9949 4.7593 14 6 9.7974 -2.6081 3.6056 15 7 8.6818 -3.1093 3.1401 16 14 11.3642 -3.6246 3.5711 17 1 11.8684 -3.8042 4.9562 18 1 11.0791 -4.9533 2.9724 19 1 12.3906 -2.9246 2.7576 20 6 8.4738 0.6488 4.7106 21 6 7.4537 1.5237 4.4170 22 6 6.7063 1.3658 3.2586 23 9 5.7063 2.2307 2.9805 24 6 4.7867 0.1533 1.1951 25 1 -0.3633 -0.6107 0.8266 26 1 -0.3633 1.0211 0.1157 27 1 -0.3634 -0.4105 -0.9421 28 1 4.2488 -0.2730 -2.1208 29 1 7.8875 -0.0131 -0.1471 30 1 8.2261 -1.3864 1.9809 31 1 8.6685 -4.0089 2.7774 32 1 9.0520 0.7773 5.6137 33 1 7.2332 2.3376 5.0917 34 1 4.2694 0.2702 2.1359 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242940337.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:31 Heat of formation + Delta-G solvation = 28.750703 kcal Electronic energy + Delta-G solvation = -19987.692205 eV Core-core repulsion = 16764.713151 eV Total energy + Delta-G solvation = -3222.979055 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.39015 -41.26667 -39.19880 -35.80979 -35.61753 -34.24041 -33.02067 -31.32673 -30.22026 -28.83288 -27.03235 -24.98582 -24.75718 -23.01642 -22.16549 -19.54198 -18.55617 -17.95609 -17.93483 -17.60195 -17.02149 -16.47128 -16.09796 -15.89376 -15.17058 -15.11973 -14.70310 -14.44941 -14.41521 -14.38518 -14.20367 -13.83729 -13.80091 -13.35624 -13.05191 -12.79139 -12.64897 -12.24237 -12.11301 -11.81998 -11.59116 -11.30231 -11.10063 -10.77187 -10.51475 -9.80162 -9.39403 -9.17536 -8.71020 -6.39965 -0.40395 -0.04651 0.75774 0.90227 1.41096 1.49193 1.52671 1.53774 1.87560 2.19314 2.57127 2.86293 3.03497 3.37930 3.53383 3.70349 3.75332 3.79994 3.92739 4.18437 4.32890 4.43371 4.71353 4.81223 4.82214 4.83590 4.94017 4.96600 4.98578 5.07139 5.16596 5.22019 5.44756 5.54768 5.70828 5.79637 5.96837 6.18437 6.47536 6.51272 6.79719 6.82635 6.84759 8.24878 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.018067 B = 0.004626 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.373830 B = 6051.932948 C = 6815.018840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.130 4.130 3 C -0.200 4.200 4 C -0.032 4.032 5 C 0.111 3.889 6 N -0.486 5.486 7 C 0.108 3.892 8 C -0.080 4.080 9 C -0.069 4.069 10 C -0.138 4.138 11 C 0.077 3.923 12 C -0.483 4.483 13 H 0.088 0.912 14 C 0.038 3.962 15 N -0.819 5.819 16 Si 0.982 3.018 17 H -0.257 1.257 18 H -0.272 1.272 19 H -0.258 1.258 20 C -0.207 4.207 21 C -0.113 4.113 22 C -0.046 4.046 23 F -0.166 7.166 24 C -0.053 4.053 25 H 0.099 0.901 26 H 0.102 0.898 27 H 0.106 0.894 28 H 0.188 0.812 29 H 0.164 0.836 30 H 0.118 0.882 31 H 0.291 0.709 32 H 0.121 0.879 33 H 0.133 0.867 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.181 2.056 -5.171 10.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.130 4.130 3 C -0.201 4.201 4 C -0.034 4.034 5 C -0.047 4.047 6 N -0.194 5.194 7 C -0.048 4.048 8 C -0.082 4.082 9 C -0.070 4.070 10 C -0.157 4.157 11 C 0.074 3.926 12 C -0.511 4.511 13 H 0.106 0.894 14 C -0.178 4.178 15 N -0.444 5.444 16 Si 0.802 3.198 17 H -0.181 1.181 18 H -0.196 1.196 19 H -0.182 1.182 20 C -0.226 4.226 21 C -0.131 4.131 22 C -0.066 4.066 23 F -0.145 7.145 24 C -0.079 4.079 25 H 0.117 0.883 26 H 0.120 0.880 27 H 0.125 0.875 28 H 0.205 0.795 29 H 0.181 0.819 30 H 0.135 0.865 31 H 0.101 0.899 32 H 0.139 0.861 33 H 0.151 0.849 34 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.876 1.765 -6.073 10.898 hybrid contribution 0.156 -0.237 1.052 1.090 sum -8.720 1.528 -5.020 10.177 Atomic orbital electron populations 1.19279 0.80553 1.04966 1.05151 1.23394 0.94794 0.97426 0.97407 1.19022 0.91059 1.04862 1.05139 1.16864 0.88498 1.03703 0.94370 1.23324 0.89368 0.94437 0.97571 1.67671 1.08356 1.13092 1.30236 1.23049 1.00837 0.94338 0.86586 1.19791 0.93394 1.00374 0.94637 1.18485 0.98263 0.96584 0.93716 1.21228 0.97054 0.99144 0.98316 1.17942 0.92151 0.92132 0.90338 1.19857 1.06575 0.96557 1.28148 0.89390 1.26773 1.00208 0.99117 0.91725 1.69856 1.28422 1.16909 1.29212 0.85237 0.77647 0.76884 0.79994 1.18139 1.19608 1.18234 1.21139 1.01146 0.99558 1.00786 1.20745 0.96474 1.00411 0.95495 1.17425 0.94699 0.94562 0.99871 1.91292 1.59889 1.69080 1.94278 1.21756 0.92871 0.95063 0.98172 0.88275 0.87977 0.87528 0.79470 0.81879 0.86468 0.89854 0.86099 0.84928 0.85412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.56 10.32 70.18 0.72 0.17 16 2 C -0.13 -3.17 14.13 31.12 0.44 -2.73 16 3 C -0.20 -6.16 13.27 30.01 0.40 -5.76 16 4 C -0.03 -1.12 5.73 -21.34 -0.12 -1.24 16 5 C 0.11 3.57 10.91 85.04 0.93 4.49 16 6 N -0.49 -17.55 10.33 -193.94 -2.00 -19.55 16 7 C 0.11 4.22 10.67 84.98 0.91 5.13 16 8 C -0.08 -3.39 5.31 -19.98 -0.11 -3.50 16 9 C -0.07 -3.22 5.49 -20.04 -0.11 -3.33 16 10 C -0.14 -6.93 8.14 22.94 0.19 -6.74 16 11 C 0.08 3.90 5.56 -21.31 -0.12 3.78 16 12 C -0.48 -24.05 9.04 23.44 0.21 -23.84 16 13 H 0.09 4.13 7.90 -2.91 -0.02 4.11 16 14 C 0.04 1.80 5.14 85.24 0.44 2.23 16 15 N -0.82 -40.79 10.98 21.82 0.24 -40.55 16 16 Si 0.98 35.86 29.59 68.60 2.03 37.89 16 17 H -0.26 -9.05 7.11 99.48 0.71 -8.35 16 18 H -0.27 -9.57 7.11 99.48 0.71 -8.87 16 19 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 20 C -0.21 -9.47 9.78 22.75 0.22 -9.25 16 21 C -0.11 -4.87 9.99 22.23 0.22 -4.65 16 22 C -0.05 -2.10 7.20 22.82 0.16 -1.93 16 23 F -0.17 -7.34 15.94 44.97 0.72 -6.62 16 24 C -0.05 -2.10 8.73 22.94 0.20 -1.90 16 25 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.19 4.58 8.06 -2.91 -0.02 4.56 16 29 H 0.16 6.09 8.04 -2.91 -0.02 6.07 16 30 H 0.12 6.12 6.17 -2.91 -0.02 6.10 16 31 H 0.29 13.25 8.30 -92.70 -0.77 12.48 16 32 H 0.12 5.01 8.06 -2.91 -0.02 4.98 16 33 H 0.13 4.88 8.06 -2.91 -0.02 4.85 16 34 H 0.13 5.08 7.86 -2.91 -0.02 5.06 16 Total: -1.00 -59.31 314.45 6.70 -52.61 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: 1.14 Total: 25.29 kcal Atomic # 6 Polarization: -53.65 SS G_CDS: 4.59 Total: -49.07 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: -1.76 Total: -60.10 kcal Atomic # 9 Polarization: -7.34 SS G_CDS: 0.72 Total: -6.62 kcal Atomic # 14 Polarization: 35.86 SS G_CDS: 2.03 Total: 37.89 kcal Total: -59.31 6.70 -52.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242940337.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.360 kcal (2) G-P(sol) polarization free energy of solvation -59.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds