Wall clock time and date at job start Tue Mar 31 2020 05:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47199 * 1 3 3 C 1.17396 * 179.97438 * 2 1 4 4 C 1.43200 * 179.97438 * 179.97438 * 3 2 1 5 5 C 1.39670 * 120.48421 * 40.57070 * 4 3 2 6 6 N 1.31762 * 120.88915 * 180.02562 * 5 4 3 7 7 C 1.31725 * 122.04001 * 359.97438 * 6 5 4 8 8 C 1.39684 * 120.86768 * 359.97438 * 7 6 5 9 9 C 1.47920 * 120.49657 * 179.97438 * 8 7 6 10 10 C 1.39032 * 120.32135 * 130.04591 * 9 8 7 11 11 C 1.38406 * 119.96196 * 179.97438 * 10 9 8 12 12 F 1.35099 * 119.69591 * 180.27327 * 11 10 9 13 13 C 1.39207 * 120.60268 * 359.97438 * 11 10 9 14 14 C 1.36355 * 120.65167 * 359.97438 * 13 11 10 15 15 C 1.40786 * 120.01797 * 0.02562 * 14 13 11 16 16 C 1.40825 * 120.29877 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99479 * 153.13457 * 16 15 14 18 18 C 1.40039 * 120.00100 * 333.13629 * 16 15 14 19 19 N 1.30797 * 120.00313 * 344.28434 * 18 16 15 20 20 Si 1.86802 * 120.00166 * 164.28497 * 18 16 15 21 21 H 1.48503 * 109.46939 * 59.99833 * 20 18 16 22 22 H 1.48501 * 109.47355 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47043 * 300.00314 * 20 18 16 24 24 C 1.39642 * 120.48460 * 220.80210 * 4 3 2 25 25 H 1.08994 * 109.47261 * 319.43132 * 1 2 3 26 26 H 1.09002 * 109.47174 * 79.43506 * 1 2 3 27 27 H 1.08998 * 109.47183 * 199.43054 * 1 2 3 28 28 H 1.07997 * 119.55893 * 359.97438 * 5 4 3 29 29 H 1.08000 * 119.56366 * 179.97438 * 7 6 5 30 30 H 1.08001 * 120.01782 * 359.97438 * 10 9 8 31 31 H 1.08000 * 119.67152 * 179.97438 * 13 11 10 32 32 H 1.08005 * 119.99063 * 179.97438 * 14 13 11 33 33 H 0.97002 * 120.00391 * 179.97438 * 19 18 16 34 34 H 1.08000 * 120.92001 * 0.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.0779 0.0018 0.0000 5 6 4.7873 -0.9118 -0.7828 6 7 6.1049 -0.9181 -0.7885 7 6 6.8108 -0.0730 -0.0655 8 6 6.1826 0.8751 0.7454 9 6 6.9834 1.8197 1.5544 10 6 6.7147 3.1831 1.5118 11 6 7.4684 4.0603 2.2722 12 9 7.1990 5.3835 2.2309 13 6 8.4973 3.5909 3.0839 14 6 8.7815 2.2587 3.1453 15 6 8.0319 1.3427 2.3830 16 6 8.3200 -0.0345 2.4425 17 1 7.5434 -0.7577 2.2415 18 6 9.6132 -0.4662 2.7622 19 7 10.6155 0.3721 2.7045 20 14 9.9070 -2.2394 3.2710 21 1 9.4876 -3.1457 2.1719 22 1 11.3508 -2.4405 3.5542 23 1 9.1160 -2.5418 4.4909 24 6 4.7855 0.9134 0.7864 25 1 -0.3633 0.7806 0.6683 26 1 -0.3633 0.1884 -1.0103 27 1 -0.3633 -0.9691 0.3419 28 1 4.2487 -1.6234 -1.3911 29 1 7.8895 -0.1139 -0.1002 30 1 5.9184 3.5576 0.8856 31 1 9.0761 4.2887 3.6706 32 1 9.5824 1.9062 3.7784 33 1 11.5113 0.0732 2.9263 34 1 4.2680 1.6304 1.4063 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242942759.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:29 Heat of formation + Delta-G solvation = 28.745654 kcal Electronic energy + Delta-G solvation = -20053.108253 eV Core-core repulsion = 16830.128979 eV Total energy + Delta-G solvation = -3222.979273 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.35148 -41.18247 -39.21625 -35.70258 -35.59681 -34.10173 -32.91014 -31.40103 -30.27444 -28.73840 -27.10710 -24.86002 -24.56967 -22.88122 -22.12630 -19.43308 -18.92537 -17.77097 -17.66335 -17.25394 -17.10151 -16.37158 -16.09093 -15.90932 -15.25447 -15.08122 -14.68954 -14.39026 -14.36478 -14.28365 -14.04521 -13.91459 -13.79340 -13.21532 -13.12762 -12.82594 -12.64269 -12.28684 -12.01280 -11.83246 -11.51226 -11.22307 -11.09244 -10.63630 -10.37051 -9.71468 -9.35113 -9.19336 -8.74366 -6.40362 -0.23760 0.11232 0.75361 0.95901 1.39540 1.46949 1.49590 1.59901 1.98706 2.16647 2.57224 2.99047 3.13081 3.47693 3.59576 3.82312 3.90718 4.05104 4.12171 4.21256 4.37806 4.43637 4.74886 4.85223 4.85583 4.89365 4.96091 5.02232 5.08849 5.15364 5.20432 5.25440 5.45569 5.63737 5.78276 5.84595 5.95322 6.17222 6.49404 6.54739 6.76909 6.82487 7.00504 8.19447 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.012273 B = 0.006040 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.813869 B = 4634.707968 C = 6397.275240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 C -0.140 4.140 3 C -0.193 4.193 4 C -0.035 4.035 5 C 0.097 3.903 6 N -0.495 5.495 7 C 0.115 3.885 8 C -0.042 4.042 9 C -0.173 4.173 10 C -0.094 4.094 11 C -0.057 4.057 12 F -0.169 7.169 13 C -0.123 4.123 14 C -0.151 4.151 15 C 0.104 3.896 16 C -0.461 4.461 17 H 0.078 0.922 18 C 0.047 3.953 19 N -0.804 5.804 20 Si 0.970 3.030 21 H -0.263 1.263 22 H -0.263 1.263 23 H -0.261 1.261 24 C -0.070 4.070 25 H 0.098 0.902 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.179 0.821 29 H 0.151 0.849 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.295 0.705 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.306 -2.923 -2.439 11.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.140 4.140 3 C -0.193 4.193 4 C -0.037 4.037 5 C -0.060 4.060 6 N -0.202 5.202 7 C -0.042 4.042 8 C -0.044 4.044 9 C -0.176 4.176 10 C -0.113 4.113 11 C -0.076 4.076 12 F -0.148 7.148 13 C -0.142 4.142 14 C -0.170 4.170 15 C 0.101 3.899 16 C -0.489 4.489 17 H 0.096 0.904 18 C -0.172 4.172 19 N -0.428 5.428 20 Si 0.791 3.209 21 H -0.187 1.187 22 H -0.187 1.187 23 H -0.186 1.186 24 C -0.095 4.095 25 H 0.116 0.884 26 H 0.121 0.879 27 H 0.120 0.880 28 H 0.196 0.804 29 H 0.169 0.831 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.107 0.893 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.586 -3.466 -2.943 11.522 hybrid contribution 0.262 0.451 0.844 0.992 sum -10.324 -3.014 -2.100 10.958 Atomic orbital electron populations 1.19243 0.80763 1.04895 1.04946 1.23341 0.94774 0.97911 0.97945 1.19090 0.91090 1.04602 1.04549 1.16837 0.88205 0.98645 1.00062 1.23208 0.89393 0.96803 0.96644 1.67638 1.08323 1.23285 1.20973 1.23018 1.00405 0.90043 0.90690 1.19535 0.92678 0.96247 0.95970 1.18345 1.04029 0.91097 1.04088 1.20702 0.99125 0.92452 0.99036 1.17286 1.04190 0.76813 1.09343 1.91296 1.94127 1.32911 1.96511 1.20692 0.97140 0.96740 0.99614 1.20923 1.02577 0.91656 1.01835 1.17839 0.89502 0.94101 0.88487 1.19640 0.95988 0.92222 1.41027 0.90402 1.26624 0.94980 1.03791 0.91779 1.69778 1.01546 1.38813 1.32672 0.85404 0.78522 0.77166 0.79824 1.18746 1.18735 1.18558 1.21891 0.92741 0.97682 0.97217 0.88357 0.87902 0.87991 0.80379 0.83149 0.86207 0.86116 0.86130 0.89337 0.84479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.53 10.32 70.18 0.72 0.20 16 2 C -0.14 -3.32 14.13 31.13 0.44 -2.88 16 3 C -0.19 -5.77 13.27 30.02 0.40 -5.38 16 4 C -0.04 -1.21 5.73 -21.35 -0.12 -1.33 16 5 C 0.10 3.23 10.91 85.05 0.93 4.16 16 6 N -0.49 -18.99 10.33 -193.66 -2.00 -20.99 16 7 C 0.11 4.78 9.18 85.06 0.78 5.56 16 8 C -0.04 -1.77 4.92 -19.98 -0.10 -1.87 16 9 C -0.17 -7.94 5.54 -19.62 -0.11 -8.04 16 10 C -0.09 -4.14 9.51 22.50 0.21 -3.93 16 11 C -0.06 -2.55 7.31 22.54 0.16 -2.39 16 12 F -0.17 -7.30 17.26 44.97 0.78 -6.52 16 13 C -0.12 -5.55 9.94 22.06 0.22 -5.33 16 14 C -0.15 -7.30 8.61 22.45 0.19 -7.10 16 15 C 0.10 5.10 5.55 -21.12 -0.12 4.98 16 16 C -0.46 -22.35 7.12 23.34 0.17 -22.18 16 17 H 0.08 3.79 6.64 -2.91 -0.02 3.77 16 18 C 0.05 2.13 5.16 85.28 0.44 2.57 16 19 N -0.80 -37.79 10.98 21.84 0.24 -37.55 16 20 Si 0.97 35.63 29.59 68.60 2.03 37.66 16 21 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 22 H -0.26 -9.08 7.11 99.48 0.71 -8.37 16 23 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16 24 C -0.07 -2.60 9.41 22.99 0.22 -2.38 16 25 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.18 4.70 8.06 -2.91 -0.02 4.67 16 29 H 0.15 6.64 7.31 -2.91 -0.02 6.62 16 30 H 0.12 4.74 8.05 -2.91 -0.02 4.72 16 31 H 0.12 4.86 8.06 -2.91 -0.02 4.84 16 32 H 0.12 5.95 6.25 -2.91 -0.02 5.93 16 33 H 0.30 12.56 8.30 -92.71 -0.77 11.80 16 34 H 0.14 4.78 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -55.78 311.25 6.62 -49.16 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: 1.14 Total: 23.58 kcal Atomic # 6 Polarization: -49.77 SS G_CDS: 4.44 Total: -45.33 kcal Atomic # 7 Polarization: -56.78 SS G_CDS: -1.76 Total: -58.54 kcal Atomic # 9 Polarization: -7.30 SS G_CDS: 0.78 Total: -6.52 kcal Atomic # 14 Polarization: 35.63 SS G_CDS: 2.03 Total: 37.66 kcal Total: -55.78 6.62 -49.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242942759.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.902 kcal (2) G-P(sol) polarization free energy of solvation -55.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds