Wall clock time and date at job start Tue Mar 31 2020 05:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31633 * 118.96963 * 2 1 4 4 C 1.33332 * 120.95575 * 179.97438 * 3 2 1 5 5 C 1.43197 * 120.51904 * 180.02562 * 4 3 2 6 6 N 4.70631 * 132.78531 * 0.02562 * 2 1 3 7 7 C 1.39475 * 118.96208 * 359.73041 * 4 3 2 8 8 C 1.39822 * 118.14286 * 0.53090 * 7 4 3 9 9 C 1.48117 * 120.52836 * 179.73444 * 8 7 4 10 10 C 1.39394 * 120.17088 * 359.45097 * 9 8 7 11 11 C 1.37948 * 119.94115 * 179.74203 * 10 9 8 12 12 C 1.38490 * 120.28795 * 0.53283 * 11 10 9 13 13 C 1.38083 * 120.34346 * 359.74136 * 12 11 10 14 14 C 1.38795 * 120.05353 * 359.97438 * 13 12 11 15 15 O 1.35607 * 120.14192 * 179.97438 * 14 13 12 16 16 C 1.34809 * 117.00448 * 354.40346 * 15 14 13 17 17 H 1.08002 * 119.99347 * 5.05476 * 16 15 14 18 18 C 1.38675 * 120.00237 * 185.05936 * 16 15 14 19 19 N 1.31537 * 120.00121 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99690 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47537 * 0.02562 * 20 18 16 22 22 H 1.48509 * 109.46975 * 120.00065 * 20 18 16 23 23 H 1.48498 * 109.47440 * 239.99723 * 20 18 16 24 24 N 1.31720 * 118.97008 * 179.97438 * 2 1 3 25 25 H 1.09000 * 109.47347 * 270.01822 * 1 2 3 26 26 H 1.09001 * 109.46871 * 30.02289 * 1 2 3 27 27 H 1.09004 * 109.46919 * 150.01594 * 1 2 3 28 28 H 1.08001 * 120.93014 * 180.26899 * 7 4 3 29 29 H 1.08001 * 120.02604 * 0.02562 * 10 9 8 30 30 H 1.07997 * 119.86021 * 180.29950 * 11 10 9 31 31 H 1.07997 * 119.82919 * 179.76772 * 12 11 10 32 32 H 1.08000 * 119.97238 * 180.02562 * 13 12 11 33 33 H 0.96996 * 119.99951 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1445 1.1516 0.0000 4 6 3.4771 1.1978 0.0005 5 6 4.1611 2.4559 0.0011 6 7 4.7038 3.4540 0.0015 7 6 4.1943 0.0017 0.0068 8 6 3.4761 -1.1980 0.0009 9 6 4.1844 -2.4989 0.0012 10 6 5.5777 -2.5380 -0.0042 11 6 6.2325 -3.7521 0.0015 12 6 5.5114 -4.9345 0.0014 13 6 4.1308 -4.9097 0.0010 14 6 3.4575 -3.6960 0.0012 15 8 2.1017 -3.6695 0.0003 16 6 1.4664 -4.8526 -0.1180 17 1 2.0335 -5.7717 -0.1243 18 6 0.0848 -4.8895 -0.2317 19 7 -0.6059 -3.7701 -0.2236 20 14 -0.7953 -6.5289 -0.3963 21 1 0.2012 -7.6298 -0.3780 22 1 -1.7409 -6.6989 0.7361 23 1 -1.5460 -6.5614 -1.6771 24 7 2.1450 -1.1524 0.0005 25 1 -0.3634 0.0003 1.0277 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3633 -0.8902 -0.5136 28 1 5.2743 0.0020 0.0117 29 1 6.1442 -1.6184 -0.0081 30 1 7.3121 -3.7809 0.0023 31 1 6.0316 -5.8810 0.0021 32 1 3.5745 -5.8353 0.0013 33 1 -1.5722 -3.7959 -0.3035 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243585467.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:33 Heat of formation + Delta-G solvation = 88.656914 kcal Electronic energy + Delta-G solvation = -20647.122108 eV Core-core repulsion = 17446.660743 eV Total energy + Delta-G solvation = -3200.461365 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.73860 -39.05484 -36.70071 -36.55785 -33.75357 -33.08314 -32.44781 -30.04388 -28.96627 -28.02947 -25.71524 -25.04543 -23.41393 -21.40932 -20.94940 -18.89375 -18.14889 -17.51018 -16.53357 -15.43178 -15.21367 -15.08098 -14.66255 -14.35666 -13.94286 -13.81331 -13.58199 -13.41176 -13.04473 -12.89982 -12.69338 -12.57701 -12.11736 -11.82234 -11.71189 -11.51291 -11.04687 -11.00013 -10.91671 -10.56135 -10.36972 -10.34716 -9.56373 -9.25319 -8.98099 -8.71315 -8.14823 -7.31669 -6.59928 -4.13064 0.75867 0.96623 2.19573 2.26774 2.47757 3.04337 3.06093 3.09731 3.10680 3.48717 3.83291 4.13793 4.40199 4.55340 4.63344 4.93523 5.01802 5.11129 5.27739 5.39783 5.58448 5.64659 5.78660 5.93814 6.07040 6.13523 6.19375 6.42892 6.52273 6.63620 6.84977 6.89849 7.03323 7.15254 7.20164 7.27581 7.43793 7.60924 7.81858 8.60097 8.82836 9.53864 10.53632 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.015426 B = 0.006387 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.642754 B = 4382.680864 C = 6177.206167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.339 3.661 3 N -0.521 5.521 4 C 0.231 3.769 5 C 0.280 3.720 6 N -0.397 5.397 7 C -0.202 4.202 8 C 0.255 3.745 9 C -0.164 4.164 10 C -0.037 4.037 11 C -0.225 4.225 12 C -0.051 4.051 13 C -0.236 4.236 14 C 0.180 3.820 15 O -0.112 6.112 16 C -0.396 4.396 17 H 0.093 0.907 18 C 0.048 3.952 19 N -0.827 5.827 20 Si 0.938 3.062 21 H -0.267 1.267 22 H -0.275 1.275 23 H -0.275 1.275 24 N -0.451 5.451 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.108 0.892 28 H 0.149 0.851 29 H 0.117 0.883 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.132 0.868 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.401 0.666 0.159 5.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.072 3.928 3 N -0.240 5.240 4 C 0.086 3.914 5 C -0.038 4.038 6 N -0.074 5.074 7 C -0.228 4.228 8 C 0.111 3.889 9 C -0.168 4.168 10 C -0.056 4.056 11 C -0.245 4.245 12 C -0.070 4.070 13 C -0.255 4.255 14 C 0.120 3.880 15 O -0.008 6.008 16 C -0.472 4.472 17 H 0.111 0.889 18 C -0.160 4.160 19 N -0.458 5.458 20 Si 0.763 3.237 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.200 1.200 24 N -0.165 5.165 25 H 0.100 0.900 26 H 0.093 0.907 27 H 0.126 0.874 28 H 0.166 0.834 29 H 0.135 0.865 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.149 0.851 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.696 2.482 0.163 5.314 hybrid contribution 0.395 -1.269 -0.046 1.330 sum 5.091 1.212 0.117 5.235 Atomic orbital electron populations 1.20604 0.85029 1.04550 1.03914 1.23312 0.98352 0.81947 0.89233 1.68135 1.07172 1.31984 1.16668 1.16335 0.89660 0.86756 0.98695 1.24972 0.92941 0.91895 0.93967 1.81204 1.09238 1.09581 1.07386 1.22610 1.02254 0.92165 1.05750 1.20133 0.88932 0.92040 0.87825 1.17356 0.91807 0.88080 1.19529 1.20721 0.91688 0.97732 0.95471 1.20478 0.98763 0.92213 1.13002 1.20922 0.93586 0.97482 0.95058 1.21183 0.94534 0.98152 1.11622 1.19292 0.85237 0.91996 0.91499 1.84206 1.11753 1.32241 1.72638 1.21586 0.90225 0.83744 1.51692 0.88934 1.25287 0.95474 0.99123 0.96097 1.70063 1.07414 1.26136 1.42207 0.85687 0.79456 0.80159 0.78392 1.19076 1.20052 1.20041 1.68812 1.08159 1.28499 1.11076 0.89966 0.90720 0.87352 0.83382 0.86491 0.87069 0.87130 0.85075 0.91937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.39 10.31 36.00 0.37 -1.02 16 2 C 0.34 6.49 7.64 -157.40 -1.20 5.29 16 3 N -0.52 -9.31 10.26 -8.78 -0.09 -9.40 16 4 C 0.23 3.76 6.61 -84.83 -0.56 3.20 16 5 C 0.28 4.29 15.59 -22.47 -0.35 3.94 16 6 N -0.40 -6.34 18.54 41.84 0.78 -5.56 16 7 C -0.20 -3.19 9.26 -38.53 -0.36 -3.55 16 8 C 0.25 4.93 6.76 -82.63 -0.56 4.37 16 9 C -0.16 -3.22 5.89 -104.73 -0.62 -3.84 16 10 C -0.04 -0.58 9.44 -39.26 -0.37 -0.95 16 11 C -0.23 -3.42 10.03 -39.59 -0.40 -3.82 16 12 C -0.05 -0.84 10.03 -39.55 -0.40 -1.23 16 13 C -0.24 -4.61 9.16 -39.43 -0.36 -4.97 16 14 C 0.18 3.98 6.65 -38.70 -0.26 3.72 16 15 O -0.11 -2.85 7.65 0.55 0.00 -2.85 16 16 C -0.40 -9.95 9.49 30.89 0.29 -9.66 16 17 H 0.09 2.16 5.21 -52.49 -0.27 1.89 16 18 C 0.05 1.19 5.49 -17.52 -0.10 1.09 16 19 N -0.83 -21.10 13.67 55.48 0.76 -20.34 16 20 Si 0.94 18.62 29.55 -169.99 -5.02 13.60 16 21 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 22 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 23 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 24 N -0.45 -9.68 8.20 -7.35 -0.06 -9.74 16 25 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 26 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.11 2.07 8.14 -51.93 -0.42 1.65 16 28 H 0.15 1.83 6.33 -52.49 -0.33 1.50 16 29 H 0.12 1.48 6.28 -52.49 -0.33 1.15 16 30 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.13 2.54 5.64 -52.49 -0.30 2.24 16 33 H 0.27 6.34 8.31 -40.82 -0.34 6.01 16 LS Contribution 303.86 15.07 4.58 4.58 Total: -1.00 -27.53 303.86 -6.40 -33.93 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -2.48 Total: 3.19 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -4.86 Total: -7.41 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: 1.38 Total: -45.04 kcal Atomic # 8 Polarization: -2.85 SS G_CDS: 0.00 Total: -2.85 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.02 Total: 13.60 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -27.53 -6.40 -33.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585467.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.588 kcal (2) G-P(sol) polarization free energy of solvation -27.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds