Wall clock time and date at job start Tue Mar 31 2020 05:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38795 * 119.81493 * 2 1 4 4 N 1.31835 * 120.38868 * 180.02562 * 3 2 1 5 5 C 1.33022 * 120.00115 * 0.02562 * 4 3 2 6 6 C 1.43204 * 120.18711 * 180.27285 * 5 4 3 7 7 N 4.69700 * 137.54569 * 359.83565 * 3 1 2 8 8 C 1.40715 * 119.63378 * 359.97438 * 5 4 3 9 9 C 1.48004 * 120.19166 * 180.02562 * 8 5 4 10 10 C 1.39593 * 120.06292 * 324.72167 * 9 8 5 11 11 C 1.37765 * 119.93616 * 179.73807 * 10 9 8 12 12 C 1.39057 * 120.06033 * 0.54226 * 11 10 9 13 13 O 1.35646 * 119.93546 * 179.74219 * 12 11 10 14 14 C 1.34807 * 117.00305 * 174.42659 * 13 12 11 15 15 H 1.08000 * 119.99799 * 5.04890 * 14 13 12 16 16 C 1.38673 * 120.00334 * 185.05366 * 14 13 12 17 17 N 1.31539 * 119.99921 * 179.97438 * 16 14 13 18 18 Si 1.86805 * 119.99906 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.46715 * 90.00080 * 18 16 14 20 20 H 1.48500 * 109.47088 * 210.00204 * 18 16 14 21 21 H 1.48494 * 109.46890 * 330.00190 * 18 16 14 22 22 C 1.39054 * 120.12894 * 359.71111 * 12 11 10 23 23 C 1.37758 * 120.06678 * 0.02701 * 22 12 11 24 24 N 1.31956 * 119.81135 * 180.02562 * 2 1 3 25 25 H 1.08997 * 109.47452 * 269.97824 * 1 2 3 26 26 H 1.08998 * 109.47023 * 29.97808 * 1 2 3 27 27 H 1.09003 * 109.47109 * 149.98019 * 1 2 3 28 28 H 1.08008 * 119.80361 * 359.97438 * 3 2 1 29 29 H 1.08001 * 120.03130 * 359.97438 * 10 9 8 30 30 H 1.07995 * 119.97191 * 180.24958 * 11 10 9 31 31 H 0.97008 * 119.99588 * 180.02562 * 17 16 14 32 32 H 1.08009 * 119.96565 * 180.02562 * 22 12 11 33 33 H 1.07995 * 120.03444 * 179.97438 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.2042 0.0000 4 7 3.5154 1.2174 -0.0005 5 6 4.1920 0.0722 -0.0015 6 6 5.6240 0.0818 0.0038 7 7 6.7599 0.0897 0.0091 8 6 3.4929 -1.1490 -0.0015 9 6 4.2333 -2.4305 -0.0021 10 6 5.4369 -2.5425 -0.7004 11 6 6.1266 -3.7350 -0.6947 12 6 5.6193 -4.8299 -0.0036 13 8 6.2979 -6.0044 -0.0040 14 6 5.8144 -6.9909 0.7772 15 1 4.8809 -6.8549 1.3030 16 6 6.5156 -8.1804 0.9057 17 7 6.0440 -9.1428 1.6683 18 14 8.1300 -8.4159 -0.0043 19 1 9.2520 -7.9506 0.8499 20 1 8.3135 -9.8548 -0.3224 21 1 8.1075 -7.6295 -1.2637 22 6 4.4180 -4.7228 0.6885 23 6 3.7266 -3.5313 0.6908 24 7 2.1630 -1.1449 -0.0005 25 1 -0.3634 -0.0004 1.0276 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3633 -0.8898 -0.5142 28 1 1.6509 2.1360 -0.0004 29 1 5.8288 -1.6939 -1.2414 30 1 7.0598 -3.8211 -1.2314 31 1 6.5348 -9.9747 1.7585 32 1 4.0265 -5.5747 1.2248 33 1 2.7934 -3.4489 1.2282 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243588674.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:58 Heat of formation + Delta-G solvation = 62.883464 kcal Electronic energy + Delta-G solvation = -19990.906663 eV Core-core repulsion = 16789.327677 eV Total energy + Delta-G solvation = -3201.578985 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.41863 -40.96621 -38.71383 -37.86173 -35.68684 -34.70452 -34.21231 -32.09801 -30.79977 -29.43902 -27.53239 -25.61496 -24.83160 -23.64192 -22.41841 -20.72107 -20.00500 -19.27611 -18.92272 -17.52503 -16.74902 -16.50500 -15.98772 -15.90171 -15.83958 -15.69031 -14.82815 -14.65388 -14.54585 -14.36846 -14.29056 -14.01189 -13.96580 -13.51792 -13.30255 -13.12247 -12.92240 -12.74347 -12.72582 -12.57788 -12.13354 -12.01959 -11.42381 -11.00239 -10.36756 -10.28011 -10.04212 -9.06143 -8.56715 -6.29024 -0.94404 -0.26113 0.39443 0.58927 1.30428 1.32468 1.33703 1.49707 1.65267 2.21962 2.23698 2.51100 2.69797 2.83782 2.87137 3.04047 3.20767 3.46091 3.80668 3.88117 3.96180 3.99834 4.24984 4.33296 4.52287 4.68833 4.87726 4.92806 4.99396 5.05159 5.16498 5.34710 5.43243 5.46226 5.65239 5.71643 5.97149 6.03100 6.22288 6.57613 6.76276 7.44841 8.53664 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.027635 B = 0.003968 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.978572 B = 7054.299039 C = 7887.388962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.127 3.873 3 C 0.061 3.939 4 N -0.411 5.411 5 C 0.103 3.897 6 C 0.285 3.715 7 N -0.415 5.415 8 C 0.203 3.797 9 C -0.149 4.149 10 C -0.045 4.045 11 C -0.189 4.189 12 C 0.148 3.852 13 O -0.230 6.230 14 C -0.405 4.405 15 H 0.091 0.909 16 C 0.018 3.982 17 N -0.912 5.912 18 Si 0.965 3.035 19 H -0.267 1.267 20 H -0.265 1.265 21 H -0.262 1.262 22 C -0.234 4.234 23 C -0.014 4.014 24 N -0.457 5.457 25 H 0.106 0.894 26 H 0.121 0.879 27 H 0.079 0.921 28 H 0.230 0.770 29 H 0.131 0.869 30 H 0.134 0.866 31 H 0.287 0.713 32 H 0.126 0.874 33 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.406 20.200 -4.080 24.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.018 4.018 3 C -0.105 4.105 4 N -0.125 5.125 5 C -0.034 4.034 6 C -0.031 4.031 7 N -0.092 5.092 8 C 0.065 3.935 9 C -0.152 4.152 10 C -0.065 4.065 11 C -0.208 4.208 12 C 0.097 3.903 13 O -0.136 6.136 14 C -0.481 4.481 15 H 0.108 0.892 16 C -0.182 4.182 17 N -0.551 5.551 18 Si 0.787 3.213 19 H -0.192 1.192 20 H -0.189 1.189 21 H -0.186 1.186 22 C -0.254 4.254 23 C -0.032 4.032 24 N -0.172 5.172 25 H 0.124 0.876 26 H 0.139 0.861 27 H 0.098 0.902 28 H 0.246 0.754 29 H 0.149 0.851 30 H 0.152 0.848 31 H 0.097 0.903 32 H 0.143 0.857 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.379 19.902 -4.098 22.817 hybrid contribution 0.321 -0.801 0.030 0.863 sum -10.058 19.101 -4.069 21.968 Atomic orbital electron populations 1.21011 0.83729 1.05993 1.05432 1.23476 1.00785 0.88432 0.89078 1.24491 0.88303 1.01316 0.96382 1.68286 1.10679 1.26652 1.06897 1.17031 0.86694 0.90993 1.08699 1.24757 0.91688 0.92814 0.93881 1.81275 1.11999 1.07840 1.08126 1.20320 0.90039 0.91476 0.91703 1.18079 0.97114 0.92590 1.07392 1.20932 0.92700 0.96285 0.96537 1.20286 1.02965 0.91240 1.06334 1.19725 0.91287 0.85709 0.93582 1.83501 1.50635 1.19234 1.60216 1.20802 1.08518 0.93311 1.25428 0.89205 1.25245 1.02294 0.93751 0.96920 1.69702 1.41108 1.06365 1.37910 0.85296 0.78234 0.78149 0.79595 1.19178 1.18925 1.18642 1.21269 0.97328 0.99959 1.06809 1.20986 0.97785 0.89762 0.94707 1.68617 1.05990 1.30764 1.11854 0.87606 0.86091 0.90235 0.75382 0.85109 0.84786 0.90269 0.85676 0.83820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.56 10.18 71.24 0.73 0.17 16 2 C 0.13 1.82 6.79 42.67 0.29 2.11 16 3 C 0.06 0.76 10.86 84.83 0.92 1.68 16 4 N -0.41 -8.62 10.42 -187.63 -1.95 -10.57 16 5 C 0.10 2.69 6.59 40.82 0.27 2.96 16 6 C 0.29 8.45 12.05 88.33 1.06 9.52 16 7 N -0.42 -13.58 18.04 19.00 0.34 -13.24 16 8 C 0.20 5.56 6.50 42.17 0.27 5.83 16 9 C -0.15 -4.93 5.56 -20.03 -0.11 -5.04 16 10 C -0.05 -1.56 8.36 22.48 0.19 -1.37 16 11 C -0.19 -7.48 9.98 22.35 0.22 -7.25 16 12 C 0.15 6.83 6.65 22.66 0.15 6.98 16 13 O -0.23 -12.19 8.58 -21.36 -0.18 -12.38 16 14 C -0.40 -23.08 9.94 67.92 0.68 -22.40 16 15 H 0.09 5.29 5.42 -2.91 -0.02 5.27 16 16 C 0.02 1.02 5.49 84.84 0.47 1.49 16 17 N -0.91 -52.82 13.96 21.62 0.30 -52.52 16 18 Si 0.97 44.38 28.62 68.60 1.96 46.34 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 20 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 21 H -0.26 -12.07 7.11 99.48 0.71 -11.37 16 22 C -0.23 -9.98 9.15 22.35 0.20 -9.78 16 23 C -0.01 -0.48 9.59 22.48 0.22 -0.26 16 24 N -0.46 -10.61 10.05 -171.55 -1.72 -12.34 16 25 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 26 H 0.12 -0.17 8.08 -2.39 -0.02 -0.19 16 27 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.23 0.43 8.06 -2.91 -0.02 0.41 16 29 H 0.13 4.09 5.68 -2.91 -0.02 4.07 16 30 H 0.13 4.95 8.06 -2.91 -0.02 4.93 16 31 H 0.29 15.26 8.31 -92.70 -0.77 14.49 16 32 H 0.13 5.69 5.62 -2.91 -0.02 5.67 16 33 H 0.14 4.35 7.97 -2.91 -0.02 4.33 16 Total: -1.00 -68.87 302.16 5.47 -63.39 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: 1.17 Total: 6.69 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: 5.56 Total: -15.38 kcal Atomic # 7 Polarization: -85.63 SS G_CDS: -3.03 Total: -88.67 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -0.18 Total: -12.38 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.96 Total: 46.34 kcal Total: -68.87 5.47 -63.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243588674.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.276 kcal (2) G-P(sol) polarization free energy of solvation -68.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds