Wall clock time and date at job start Tue Mar 31 2020 05:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38050 * 119.95593 * 2 1 4 4 C 1.38124 * 120.28369 * 180.02562 * 3 2 1 5 5 C 1.39459 * 120.17999 * 0.02562 * 4 3 2 6 6 C 1.48403 * 120.04649 * 179.97438 * 5 4 3 7 7 C 1.39582 * 120.01589 * 129.99133 * 6 5 4 8 8 C 1.38469 * 120.42088 * 179.97438 * 7 6 5 9 9 C 1.37660 * 120.45595 * 0.02562 * 8 7 6 10 10 C 1.40744 * 120.01479 * 359.97438 * 9 8 7 11 11 C 1.41321 * 120.20989 * 180.02562 * 10 9 8 12 12 H 1.07995 * 120.00068 * 154.31547 * 11 10 9 13 13 C 1.39929 * 119.99739 * 334.59255 * 11 10 9 14 14 N 1.30848 * 119.99891 * 343.00191 * 13 11 10 15 15 Si 1.86796 * 120.00060 * 163.00686 * 13 11 10 16 16 H 1.48499 * 109.46915 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47460 * 119.99905 * 15 13 11 18 18 H 1.48497 * 109.47091 * 239.99797 * 15 13 11 19 19 C 1.39061 * 120.01633 * 310.25377 * 6 5 4 20 20 F 1.35105 * 120.21917 * 0.02562 * 19 6 5 21 21 C 1.39054 * 119.90833 * 0.24757 * 5 4 3 22 22 C 1.39460 * 119.72279 * 359.49849 * 21 5 4 23 23 C 1.43197 * 120.09587 * 180.25021 * 22 21 5 24 24 N 3.48458 * 80.33754 * 180.02562 * 2 1 3 25 25 H 1.08994 * 109.47239 * 89.99732 * 1 2 3 26 26 H 1.09006 * 109.46970 * 210.00237 * 1 2 3 27 27 H 1.08997 * 109.46826 * 329.99801 * 1 2 3 28 28 H 1.08000 * 119.85962 * 0.02562 * 3 2 1 29 29 H 1.07995 * 119.91154 * 180.02562 * 4 3 2 30 30 H 1.07999 * 119.79010 * 0.02562 * 7 6 5 31 31 H 1.08001 * 119.77464 * 179.97438 * 8 7 6 32 32 H 1.07998 * 119.99533 * 180.02562 * 9 8 7 33 33 H 0.97000 * 119.99897 * 179.97438 * 14 13 11 34 34 H 1.07998 * 120.13998 * 179.72813 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1963 1.1961 0.0000 4 6 3.5775 1.2040 -0.0005 5 6 4.2855 0.0025 -0.0016 6 6 5.7695 0.0144 -0.0028 7 6 6.4747 -0.7571 0.9223 8 6 7.8593 -0.7527 0.9284 9 6 8.5586 0.0128 0.0229 10 6 7.8666 0.7979 -0.9182 11 6 8.5803 1.5849 -1.8501 12 1 8.1277 1.8458 -2.7953 13 6 9.8756 2.0211 -1.5505 14 7 10.3042 1.9982 -0.3144 15 14 10.9930 2.6364 -2.9151 16 1 10.2763 2.5610 -4.2135 17 1 11.3780 4.0445 -2.6427 18 1 12.2133 1.7922 -2.9741 19 6 6.4581 0.7984 -0.9219 20 9 5.7806 1.5517 -1.8158 21 6 3.5990 -1.2068 -0.0074 22 6 2.2044 -1.2102 -0.0014 23 6 1.4894 -2.4509 -0.0019 24 7 0.9221 -3.4351 -0.0015 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6533 2.1296 0.0004 29 1 4.1107 2.1431 -0.0001 30 1 5.9369 -1.3620 1.6374 31 1 8.3944 -1.3533 1.6491 32 1 9.6386 0.0104 0.0340 33 1 11.2022 2.3003 -0.1067 34 1 4.1435 -2.1395 -0.0127 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244483890.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:28 Heat of formation + Delta-G solvation = 10.638806 kcal Electronic energy + Delta-G solvation = -20133.018217 eV Core-core repulsion = 16909.253771 eV Total energy + Delta-G solvation = -3223.764445 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -47.37853 -39.56808 -37.41735 -36.30198 -34.21405 -32.86248 -31.22248 -29.92342 -29.33384 -26.33419 -25.43996 -23.61194 -22.13317 -20.80554 -20.74765 -18.38504 -16.96261 -16.14755 -15.76555 -15.56667 -15.22123 -14.68926 -14.43421 -14.28093 -14.06126 -13.79161 -13.13719 -13.05604 -12.96320 -12.80503 -12.71119 -12.42872 -12.00766 -11.89319 -11.80159 -11.46093 -11.27018 -11.15542 -11.02022 -10.74586 -10.53840 -9.97052 -9.69817 -9.39172 -8.83382 -8.64676 -7.60048 -7.32874 -6.93545 -4.54300 0.89487 1.35060 2.52778 2.56018 2.70723 3.00079 3.02629 3.06934 3.13601 3.82207 3.94659 3.99011 4.41702 4.75706 4.84830 5.18578 5.20702 5.36850 5.47281 5.49881 5.65925 5.68398 5.73604 5.94416 6.07078 6.16158 6.33807 6.43625 6.48909 6.64552 6.73456 6.94256 6.99650 7.04970 7.34581 7.44179 7.51983 7.76851 7.83429 7.93902 8.38956 8.60859 8.68202 10.00171 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.029844 B = 0.004096 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.997372 B = 6833.868182 C = 7302.236694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.051 4.051 3 C -0.121 4.121 4 C -0.068 4.068 5 C -0.020 4.020 6 C -0.071 4.071 7 C -0.199 4.199 8 C -0.111 4.111 9 C -0.138 4.138 10 C 0.085 3.915 11 C -0.453 4.453 12 H 0.084 0.916 13 C 0.076 3.924 14 N -0.789 5.789 15 Si 0.912 3.088 16 H -0.258 1.258 17 H -0.273 1.273 18 H -0.270 1.270 19 C -0.007 4.007 20 F -0.157 7.157 21 C -0.058 4.058 22 C -0.042 4.042 23 C 0.268 3.732 24 N -0.434 5.434 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.131 0.869 29 H 0.133 0.867 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.126 0.874 33 H 0.283 0.717 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.651 0.081 1.411 8.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.054 4.054 3 C -0.139 4.139 4 C -0.086 4.086 5 C -0.020 4.020 6 C -0.072 4.072 7 C -0.219 4.219 8 C -0.130 4.130 9 C -0.158 4.158 10 C 0.082 3.918 11 C -0.482 4.482 12 H 0.102 0.898 13 C -0.142 4.142 14 N -0.414 5.414 15 Si 0.736 3.264 16 H -0.182 1.182 17 H -0.198 1.198 18 H -0.195 1.195 19 C -0.027 4.027 20 F -0.136 7.136 21 C -0.078 4.078 22 C -0.046 4.046 23 C -0.047 4.047 24 N -0.110 5.110 25 H 0.093 0.907 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.149 0.851 29 H 0.151 0.849 30 H 0.118 0.882 31 H 0.116 0.884 32 H 0.144 0.856 33 H 0.094 0.906 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.355 -1.348 1.520 9.574 hybrid contribution 0.824 0.838 -0.619 1.328 sum -8.532 -0.510 0.902 8.595 Atomic orbital electron populations 1.20855 0.90961 1.02954 1.02726 1.19819 0.95741 0.91593 0.98210 1.20855 0.93978 0.97023 1.02089 1.21585 0.93658 0.98468 0.94923 1.18817 0.93264 0.92162 0.97756 1.18203 0.89366 1.00898 0.98765 1.20250 0.93774 1.05507 1.02358 1.20671 0.93534 0.99739 0.99051 1.21272 1.00102 0.97006 0.97402 1.17566 0.88662 0.92180 0.93442 1.19550 0.98269 1.27514 1.02852 0.89784 1.25907 0.98305 0.93783 0.96221 1.69805 1.18318 1.34398 1.18847 0.86184 0.79707 0.78825 0.81690 1.18198 1.19782 1.19527 1.17816 0.89952 1.00333 0.94579 1.91283 1.80107 1.75090 1.67074 1.21250 0.91199 0.98671 0.96685 1.15780 0.92052 0.86352 1.10380 1.25710 0.93000 0.92769 0.93199 1.81205 1.09151 1.10902 1.09739 0.90700 0.91886 0.90745 0.85141 0.84948 0.88197 0.88414 0.85582 0.90555 0.84902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 9.60 36.00 0.35 -0.77 16 2 C -0.05 -0.62 5.92 -104.15 -0.62 -1.24 16 3 C -0.12 -1.50 9.67 -39.69 -0.38 -1.88 16 4 C -0.07 -1.04 8.85 -39.17 -0.35 -1.39 16 5 C -0.02 -0.34 5.31 -104.95 -0.56 -0.90 16 6 C -0.07 -1.47 5.47 -104.90 -0.57 -2.04 16 7 C -0.20 -3.98 9.51 -39.00 -0.37 -4.35 16 8 C -0.11 -2.34 10.01 -39.71 -0.40 -2.74 16 9 C -0.14 -3.29 8.68 -38.85 -0.34 -3.63 16 10 C 0.08 2.13 5.57 -106.79 -0.59 1.53 16 11 C -0.45 -11.51 8.77 -37.78 -0.33 -11.84 16 12 H 0.08 2.12 7.75 -52.49 -0.41 1.72 16 13 C 0.08 1.81 5.15 -17.34 -0.09 1.72 16 14 N -0.79 -19.05 10.96 55.55 0.61 -18.44 16 15 Si 0.91 17.77 29.59 -169.99 -5.03 12.74 16 16 H -0.26 -5.06 7.11 56.52 0.40 -4.65 16 17 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 18 H -0.27 -5.15 7.11 56.52 0.40 -4.74 16 19 C -0.01 -0.15 7.15 -38.29 -0.27 -0.43 16 20 F -0.16 -3.63 15.31 2.25 0.03 -3.59 16 21 C -0.06 -0.88 9.21 -38.82 -0.36 -1.23 16 22 C -0.04 -0.58 5.73 -106.98 -0.61 -1.19 16 23 C 0.27 3.81 13.78 -22.47 -0.31 3.50 16 24 N -0.43 -6.78 18.54 41.84 0.78 -6.01 16 25 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.62 7.08 -51.93 -0.37 0.25 16 27 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 28 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 29 H 0.13 2.08 7.74 -52.49 -0.41 1.68 16 30 H 0.10 1.75 8.03 -52.49 -0.42 1.32 16 31 H 0.10 1.80 8.06 -52.49 -0.42 1.37 16 32 H 0.13 3.08 6.19 -52.49 -0.32 2.75 16 33 H 0.28 6.18 8.30 -40.82 -0.34 5.84 16 34 H 0.13 1.93 8.04 -52.49 -0.42 1.51 16 LS Contribution 309.54 15.07 4.66 4.66 Total: -1.00 -26.19 309.54 -7.92 -34.12 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -3.17 Total: 3.40 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: -5.81 Total: -26.88 kcal Atomic # 7 Polarization: -25.84 SS G_CDS: 1.38 Total: -24.45 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.03 Total: -3.59 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.03 Total: 12.74 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -26.19 -7.92 -34.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244483890.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.756 kcal (2) G-P(sol) polarization free energy of solvation -26.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds