Wall clock time and date at job start Tue Mar 31 2020 05:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38112 * 119.92514 * 2 1 4 4 C 1.38028 * 120.31029 * 180.02562 * 3 2 1 5 5 C 1.39745 * 120.15599 * 359.71982 * 4 3 2 6 6 C 1.47913 * 120.08001 * 180.30109 * 5 4 3 7 7 C 1.39033 * 120.32151 * 129.95537 * 6 5 4 8 8 C 1.38403 * 119.96143 * 179.74840 * 7 6 5 9 9 F 1.35101 * 119.69797 * 180.27790 * 8 7 6 10 10 C 1.39208 * 120.60494 * 0.56138 * 8 7 6 11 11 C 1.36357 * 120.65202 * 359.69185 * 10 8 7 12 12 C 1.40788 * 120.01471 * 0.03142 * 11 10 8 13 13 C 1.40827 * 120.30106 * 179.97438 * 12 11 10 14 14 H 1.07997 * 119.99977 * 152.94876 * 13 12 11 15 15 C 1.40044 * 119.99754 * 332.95362 * 13 12 11 16 16 N 1.30799 * 120.00105 * 344.42623 * 15 13 12 17 17 Si 1.86794 * 120.00123 * 164.42704 * 15 13 12 18 18 H 1.48500 * 109.47384 * 89.99895 * 17 15 13 19 19 H 1.48505 * 109.47364 * 209.99961 * 17 15 13 20 20 H 1.48505 * 109.47432 * 330.00095 * 17 15 13 21 21 C 1.39359 * 119.84951 * 0.53588 * 5 4 3 22 22 C 1.39379 * 119.69062 * 359.46652 * 21 5 4 23 23 C 1.43200 * 120.07696 * 180.29710 * 22 21 5 24 24 N 3.48480 * 80.30766 * 179.97438 * 2 1 3 25 25 H 1.08995 * 109.47285 * 270.02436 * 1 2 3 26 26 H 1.09005 * 109.47012 * 30.02321 * 1 2 3 27 27 H 1.09000 * 109.47220 * 150.01755 * 1 2 3 28 28 H 1.08005 * 119.84717 * 359.97438 * 3 2 1 29 29 H 1.08006 * 119.92626 * 180.02562 * 4 3 2 30 30 H 1.08001 * 120.01625 * 0.02771 * 7 6 5 31 31 H 1.07998 * 119.67378 * 179.72220 * 10 8 7 32 32 H 1.07997 * 119.99163 * 179.97438 * 11 10 8 33 33 H 0.96998 * 120.00356 * 179.97438 * 16 15 13 34 34 H 1.07994 * 120.15414 * 179.74235 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1970 0.0000 4 6 3.5763 1.2063 -0.0005 5 6 4.2864 0.0027 0.0048 6 6 5.7655 0.0146 0.0110 7 6 6.4697 -0.7486 0.9354 8 6 7.8537 -0.7359 0.9311 9 9 8.5327 -1.4839 1.8282 10 6 8.5524 0.0451 0.0148 11 6 7.8869 0.8071 -0.8994 12 6 6.4792 0.8098 -0.9227 13 6 5.7857 1.5949 -1.8639 14 1 4.7987 1.3013 -2.1896 15 6 6.3759 2.7564 -2.3776 16 7 7.4147 3.2812 -1.7806 17 14 5.6798 3.5562 -3.9154 18 1 4.6453 4.5501 -3.5316 19 1 6.7712 4.2386 -4.6560 20 1 5.0692 2.5158 -4.7815 21 6 3.5979 -1.2089 -0.0006 22 6 2.2041 -1.2109 0.0000 23 6 1.4882 -2.4512 0.0009 24 7 0.9203 -3.4351 0.0015 25 1 -0.3633 0.0004 1.0276 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3634 -0.8901 -0.5136 28 1 1.6523 2.1302 -0.0004 29 1 4.1088 2.1459 -0.0001 30 1 5.9371 -1.3544 1.6535 31 1 9.6323 0.0471 0.0277 32 1 8.4397 1.4093 -1.6052 33 1 7.8237 4.0854 -2.1366 34 1 4.1417 -2.1419 -0.0007 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244484264.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:03 Heat of formation + Delta-G solvation = 8.442206 kcal Electronic energy + Delta-G solvation = -20348.881147 eV Core-core repulsion = 17125.021450 eV Total energy + Delta-G solvation = -3223.859697 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -47.58136 -39.40430 -37.55145 -36.08113 -33.87794 -33.00134 -31.00559 -29.75312 -29.58094 -26.56858 -25.04192 -23.36556 -21.99270 -21.06897 -20.50065 -17.97959 -17.52501 -15.94855 -15.65194 -15.33671 -15.14891 -14.63386 -14.32870 -14.27538 -14.10187 -13.84048 -12.99395 -12.94556 -12.86000 -12.60725 -12.48162 -12.34842 -12.25088 -12.10668 -11.48669 -11.44498 -11.26881 -11.04085 -10.93951 -10.75629 -10.53651 -10.12894 -9.67857 -9.39123 -8.57924 -8.44697 -7.61553 -7.43543 -7.03671 -4.60574 1.15836 1.60130 2.47261 2.64016 2.86674 2.93885 2.94718 3.01400 3.31601 3.72537 4.15619 4.21659 4.33734 4.99891 5.07498 5.28292 5.45015 5.47984 5.62893 5.80187 5.80366 5.90287 5.93160 5.94442 6.13513 6.22323 6.44527 6.61959 6.71733 6.76542 6.84944 6.95131 7.08949 7.21317 7.24920 7.50291 7.65512 7.69078 7.75275 7.94051 8.28533 8.54349 8.61398 9.87490 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.011820 B = 0.007043 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.245850 B = 3974.660577 C = 5904.691450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.061 4.061 3 C -0.127 4.127 4 C -0.059 4.059 5 C 0.014 3.986 6 C -0.173 4.173 7 C -0.094 4.094 8 C -0.045 4.045 9 F -0.173 7.173 10 C -0.123 4.123 11 C -0.134 4.134 12 C 0.125 3.875 13 C -0.444 4.444 14 H 0.088 0.912 15 C 0.076 3.924 16 N -0.782 5.782 17 Si 0.907 3.093 18 H -0.266 1.266 19 H -0.274 1.274 20 H -0.258 1.258 21 C -0.076 4.076 22 C -0.045 4.045 23 C 0.271 3.729 24 N -0.444 5.444 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.059 0.941 28 H 0.126 0.874 29 H 0.140 0.860 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.128 0.872 33 H 0.286 0.714 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.014 1.465 0.337 6.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.063 4.063 3 C -0.145 4.145 4 C -0.078 4.078 5 C 0.014 3.986 6 C -0.175 4.175 7 C -0.112 4.112 8 C -0.065 4.065 9 F -0.152 7.152 10 C -0.142 4.142 11 C -0.153 4.153 12 C 0.122 3.878 13 C -0.472 4.472 14 H 0.106 0.894 15 C -0.144 4.144 16 N -0.406 5.406 17 Si 0.731 3.269 18 H -0.191 1.191 19 H -0.199 1.199 20 H -0.181 1.181 21 C -0.097 4.097 22 C -0.049 4.049 23 C -0.043 4.043 24 N -0.120 5.120 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.144 0.856 29 H 0.158 0.842 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.146 0.854 33 H 0.097 0.903 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.708 0.124 0.352 6.719 hybrid contribution 0.285 0.713 -0.507 0.920 sum -6.423 0.837 -0.154 6.480 Atomic orbital electron populations 1.20819 0.91411 1.02700 1.02337 1.19747 0.95391 0.91681 0.99513 1.20847 0.94312 0.96672 1.02708 1.21720 0.93039 0.99222 0.93811 1.18593 0.92967 0.91439 0.95645 1.18239 0.89631 1.08406 1.01192 1.20532 0.91858 0.99682 0.99176 1.17186 0.89634 1.03036 0.96606 1.91298 1.80625 1.75914 1.67378 1.20525 0.98560 0.98272 0.96820 1.20949 0.94455 1.00075 0.99836 1.17553 0.91515 0.89083 0.89645 1.19612 1.03114 1.05178 1.19286 0.89398 1.25988 0.94068 0.96967 0.97381 1.69766 1.17829 1.17444 1.35544 0.86300 0.79618 0.79747 0.81275 1.19102 1.19918 1.18148 1.21328 0.91120 0.98722 0.98491 1.15752 0.92110 0.86131 1.10897 1.25830 0.92797 0.92799 0.92907 1.81180 1.09430 1.11111 1.10244 0.91082 0.90978 0.92153 0.85622 0.84244 0.87776 0.88052 0.85439 0.90269 0.85599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.27 9.60 36.01 0.35 -0.92 16 2 C -0.06 -0.83 5.92 -104.11 -0.62 -1.45 16 3 C -0.13 -1.77 9.66 -39.70 -0.38 -2.15 16 4 C -0.06 -0.99 7.99 -39.10 -0.31 -1.30 16 5 C 0.01 0.25 4.93 -104.96 -0.52 -0.27 16 6 C -0.17 -3.64 5.52 -104.24 -0.58 -4.22 16 7 C -0.09 -1.96 9.48 -39.23 -0.37 -2.33 16 8 C -0.04 -0.99 7.31 -39.16 -0.29 -1.27 16 9 F -0.17 -3.72 17.26 2.25 0.04 -3.68 16 10 C -0.12 -2.68 9.94 -39.90 -0.40 -3.08 16 11 C -0.13 -3.07 8.61 -39.30 -0.34 -3.41 16 12 C 0.12 2.85 5.55 -106.55 -0.59 2.26 16 13 C -0.44 -9.85 7.08 -37.93 -0.27 -10.12 16 14 H 0.09 1.90 6.64 -52.49 -0.35 1.55 16 15 C 0.08 1.63 5.17 -17.31 -0.09 1.54 16 16 N -0.78 -17.45 10.99 55.55 0.61 -16.84 16 17 Si 0.91 16.33 29.59 -169.99 -5.03 11.31 16 18 H -0.27 -4.72 7.11 56.52 0.40 -4.32 16 19 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 20 H -0.26 -4.71 7.11 56.52 0.40 -4.30 16 21 C -0.08 -1.26 9.23 -38.74 -0.36 -1.61 16 22 C -0.05 -0.69 5.73 -106.99 -0.61 -1.30 16 23 C 0.27 4.23 13.77 -22.47 -0.31 3.92 16 24 N -0.44 -7.49 18.54 41.84 0.78 -6.71 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 27 H 0.06 0.69 7.07 -51.93 -0.37 0.32 16 28 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 29 H 0.14 2.47 7.28 -52.48 -0.38 2.08 16 30 H 0.10 1.97 8.04 -52.49 -0.42 1.55 16 31 H 0.10 2.01 8.06 -52.49 -0.42 1.59 16 32 H 0.13 2.98 6.26 -52.49 -0.33 2.65 16 33 H 0.29 5.83 8.30 -40.82 -0.34 5.49 16 34 H 0.13 2.01 8.05 -52.49 -0.42 1.59 16 LS Contribution 307.14 15.07 4.63 4.63 Total: -1.00 -24.05 307.14 -7.75 -31.80 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -3.09 Total: 5.21 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: -5.68 Total: -25.71 kcal Atomic # 7 Polarization: -24.94 SS G_CDS: 1.39 Total: -23.56 kcal Atomic # 9 Polarization: -3.72 SS G_CDS: 0.04 Total: -3.68 kcal Atomic # 14 Polarization: 16.33 SS G_CDS: -5.03 Total: 11.31 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -24.05 -7.75 -31.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244484264.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.247 kcal (2) G-P(sol) polarization free energy of solvation -24.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds