Wall clock time and date at job start Tue Mar 31 2020 05:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38112 * 119.92514 * 2 1 4 4 C 1.38028 * 120.31029 * 180.02562 * 3 2 1 5 5 C 1.39745 * 120.15599 * 359.71982 * 4 3 2 6 6 C 1.47913 * 120.08001 * 180.30109 * 5 4 3 7 7 C 1.39033 * 120.32151 * 129.95537 * 6 5 4 8 8 C 1.38403 * 119.96143 * 179.74840 * 7 6 5 9 9 F 1.35101 * 119.69797 * 180.27790 * 8 7 6 10 10 C 1.39208 * 120.60494 * 0.56138 * 8 7 6 11 11 C 1.36357 * 120.65202 * 359.69185 * 10 8 7 12 12 C 1.40788 * 120.01471 * 0.03142 * 11 10 8 13 13 C 1.40827 * 120.30106 * 179.97438 * 12 11 10 14 14 H 1.07997 * 119.99977 * 152.94876 * 13 12 11 15 15 C 1.40044 * 119.99754 * 332.95362 * 13 12 11 16 16 N 1.30799 * 120.00105 * 344.42623 * 15 13 12 17 17 Si 1.86794 * 120.00123 * 164.42704 * 15 13 12 18 18 H 1.48500 * 109.47384 * 89.99895 * 17 15 13 19 19 H 1.48505 * 109.47364 * 209.99961 * 17 15 13 20 20 H 1.48505 * 109.47432 * 330.00095 * 17 15 13 21 21 C 1.39359 * 119.84951 * 0.53588 * 5 4 3 22 22 C 1.39379 * 119.69062 * 359.46652 * 21 5 4 23 23 C 1.43200 * 120.07696 * 180.29710 * 22 21 5 24 24 N 3.48480 * 80.30766 * 179.97438 * 2 1 3 25 25 H 1.08995 * 109.47285 * 270.02436 * 1 2 3 26 26 H 1.09005 * 109.47012 * 30.02321 * 1 2 3 27 27 H 1.09000 * 109.47220 * 150.01755 * 1 2 3 28 28 H 1.08005 * 119.84717 * 359.97438 * 3 2 1 29 29 H 1.08006 * 119.92626 * 180.02562 * 4 3 2 30 30 H 1.08001 * 120.01625 * 0.02771 * 7 6 5 31 31 H 1.07998 * 119.67378 * 179.72220 * 10 8 7 32 32 H 1.07997 * 119.99163 * 179.97438 * 11 10 8 33 33 H 0.96998 * 120.00356 * 179.97438 * 16 15 13 34 34 H 1.07994 * 120.15414 * 179.74235 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.1970 0.0000 4 6 3.5763 1.2063 -0.0005 5 6 4.2864 0.0027 0.0048 6 6 5.7655 0.0146 0.0110 7 6 6.4697 -0.7486 0.9354 8 6 7.8537 -0.7359 0.9311 9 9 8.5327 -1.4839 1.8282 10 6 8.5524 0.0451 0.0148 11 6 7.8869 0.8071 -0.8994 12 6 6.4792 0.8098 -0.9227 13 6 5.7857 1.5949 -1.8639 14 1 4.7987 1.3013 -2.1896 15 6 6.3759 2.7564 -2.3776 16 7 7.4147 3.2812 -1.7806 17 14 5.6798 3.5562 -3.9154 18 1 4.6453 4.5501 -3.5316 19 1 6.7712 4.2386 -4.6560 20 1 5.0692 2.5158 -4.7815 21 6 3.5979 -1.2089 -0.0006 22 6 2.2041 -1.2109 0.0000 23 6 1.4882 -2.4512 0.0009 24 7 0.9203 -3.4351 0.0015 25 1 -0.3633 0.0004 1.0276 26 1 -0.3633 0.8898 -0.5142 27 1 -0.3634 -0.8901 -0.5136 28 1 1.6523 2.1302 -0.0004 29 1 4.1088 2.1459 -0.0001 30 1 5.9371 -1.3544 1.6535 31 1 9.6323 0.0471 0.0277 32 1 8.4397 1.4093 -1.6052 33 1 7.8237 4.0854 -2.1366 34 1 4.1417 -2.1419 -0.0007 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244484264.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:02 Heat of formation + Delta-G solvation = 0.795213 kcal Electronic energy + Delta-G solvation = -20349.212746 eV Core-core repulsion = 17125.021450 eV Total energy + Delta-G solvation = -3224.191296 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.29875 -40.71357 -39.10577 -37.38576 -35.51978 -34.30239 -32.27774 -31.24320 -31.17458 -27.88155 -26.61480 -24.66422 -23.38545 -22.71647 -21.87823 -19.44736 -19.13771 -17.51405 -17.22338 -16.69998 -16.42185 -16.18222 -16.01850 -15.82166 -15.26849 -15.15346 -14.49171 -14.13071 -14.09863 -13.98002 -13.88285 -13.83256 -13.70242 -13.24691 -12.98738 -12.81586 -12.73731 -12.39462 -12.27553 -12.18624 -11.98931 -11.70607 -11.29301 -11.01101 -9.90562 -9.79446 -9.27072 -9.00284 -8.64621 -6.30096 -0.09414 0.29153 0.82384 1.04987 1.46444 1.51695 1.59308 1.61442 2.03204 2.22512 2.65466 2.90771 2.99174 3.61611 3.83105 3.96279 4.01629 4.22341 4.29980 4.38561 4.52872 4.61887 4.79703 4.82571 4.86952 5.03406 5.11316 5.13204 5.26180 5.29778 5.34767 5.55631 5.59098 5.72906 5.78817 5.92662 6.05857 6.09382 6.25928 6.45053 6.59522 6.86915 6.92616 8.28198 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.011820 B = 0.007043 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.245850 B = 3974.660577 C = 5904.691450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.043 4.043 3 C -0.117 4.117 4 C -0.064 4.064 5 C -0.014 4.014 6 C -0.168 4.168 7 C -0.098 4.098 8 C -0.063 4.063 9 F -0.172 7.172 10 C -0.128 4.128 11 C -0.155 4.155 12 C 0.100 3.900 13 C -0.456 4.456 14 H 0.090 0.910 15 C 0.044 3.956 16 N -0.811 5.811 17 Si 0.970 3.030 18 H -0.256 1.256 19 H -0.273 1.273 20 H -0.260 1.260 21 C -0.075 4.075 22 C -0.050 4.050 23 C 0.286 3.714 24 N -0.465 5.465 25 H 0.087 0.913 26 H 0.097 0.903 27 H 0.055 0.945 28 H 0.161 0.839 29 H 0.125 0.875 30 H 0.121 0.879 31 H 0.114 0.886 32 H 0.117 0.883 33 H 0.292 0.708 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.534 2.199 -0.005 8.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.046 4.046 3 C -0.134 4.134 4 C -0.083 4.083 5 C -0.015 4.015 6 C -0.170 4.170 7 C -0.117 4.117 8 C -0.083 4.083 9 F -0.152 7.152 10 C -0.147 4.147 11 C -0.175 4.175 12 C 0.097 3.903 13 C -0.484 4.484 14 H 0.108 0.892 15 C -0.174 4.174 16 N -0.435 5.435 17 Si 0.791 3.209 18 H -0.180 1.180 19 H -0.197 1.197 20 H -0.184 1.184 21 C -0.095 4.095 22 C -0.053 4.053 23 C -0.027 4.027 24 N -0.141 5.141 25 H 0.106 0.894 26 H 0.115 0.885 27 H 0.074 0.926 28 H 0.178 0.822 29 H 0.143 0.857 30 H 0.139 0.861 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.103 0.897 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.228 0.849 0.025 9.267 hybrid contribution 0.984 0.465 -0.346 1.142 sum -8.244 1.314 -0.321 8.354 Atomic orbital electron populations 1.20919 0.88859 1.03765 1.03708 1.20125 0.97115 0.90760 0.96600 1.21127 0.93023 0.98235 1.01053 1.21672 0.94388 0.97979 0.94240 1.18496 0.91578 0.92783 0.98602 1.18545 0.91446 1.06956 1.00029 1.20767 0.91651 0.99817 0.99483 1.17358 0.90233 1.03632 0.97054 1.91287 1.80675 1.75903 1.67314 1.20658 0.99335 0.98070 0.96649 1.20913 0.94881 1.01100 1.00561 1.17891 0.91766 0.90087 0.90545 1.19737 1.03356 1.05620 1.19689 0.89177 1.26684 0.94130 0.97095 0.99485 1.69815 1.18863 1.18062 1.36803 0.85345 0.79039 0.78780 0.77690 1.18039 1.19743 1.18407 1.21263 0.91842 0.98086 0.98350 1.15777 0.91506 0.86664 1.11379 1.25766 0.92246 0.92504 0.92223 1.81203 1.10251 1.11594 1.11077 0.89413 0.88456 0.92601 0.82177 0.85688 0.86064 0.86773 0.86553 0.89673 0.85674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.03 9.60 71.24 0.68 -1.34 16 2 C -0.04 -1.04 5.92 -19.53 -0.12 -1.15 16 3 C -0.12 -2.86 9.66 22.19 0.21 -2.64 16 4 C -0.06 -2.06 7.99 22.58 0.18 -1.88 16 5 C -0.01 -0.52 4.93 -20.08 -0.10 -0.62 16 6 C -0.17 -7.18 5.52 -19.62 -0.11 -7.29 16 7 C -0.10 -4.16 9.48 22.50 0.21 -3.95 16 8 C -0.06 -2.82 7.31 22.54 0.16 -2.65 16 9 F -0.17 -7.47 17.26 44.97 0.78 -6.69 16 10 C -0.13 -5.77 9.94 22.06 0.22 -5.55 16 11 C -0.16 -7.38 8.61 22.45 0.19 -7.19 16 12 C 0.10 4.68 5.55 -21.12 -0.12 4.57 16 13 C -0.46 -20.46 7.08 23.34 0.17 -20.30 16 14 H 0.09 3.89 6.64 -2.91 -0.02 3.87 16 15 C 0.04 1.87 5.17 85.28 0.44 2.31 16 16 N -0.81 -36.76 10.99 21.85 0.24 -36.52 16 17 Si 0.97 32.87 29.59 68.60 2.03 34.90 16 18 H -0.26 -8.22 7.11 99.48 0.71 -7.51 16 19 H -0.27 -9.09 7.11 99.48 0.71 -8.38 16 20 H -0.26 -8.85 7.11 99.48 0.71 -8.14 16 21 C -0.07 -2.40 9.23 22.81 0.21 -2.19 16 22 C -0.05 -1.40 5.73 -21.40 -0.12 -1.52 16 23 C 0.29 8.38 13.77 88.33 1.22 9.60 16 24 N -0.46 -14.92 18.54 19.00 0.35 -14.57 16 25 H 0.09 1.32 8.14 -2.39 -0.02 1.31 16 26 H 0.10 1.27 8.08 -2.38 -0.02 1.25 16 27 H 0.05 1.07 7.07 -2.39 -0.02 1.05 16 28 H 0.16 2.84 8.06 -2.91 -0.02 2.81 16 29 H 0.13 4.38 7.28 -2.91 -0.02 4.36 16 30 H 0.12 4.58 8.04 -2.91 -0.02 4.56 16 31 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 32 H 0.12 5.69 6.26 -2.91 -0.02 5.67 16 33 H 0.29 12.03 8.30 -92.71 -0.77 11.26 16 34 H 0.13 3.95 8.05 -2.91 -0.02 3.92 16 Total: -1.00 -51.89 307.14 7.88 -44.01 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 1.14 Total: 20.67 kcal Atomic # 6 Polarization: -45.14 SS G_CDS: 3.34 Total: -41.80 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: 0.59 Total: -51.08 kcal Atomic # 9 Polarization: -7.47 SS G_CDS: 0.78 Total: -6.69 kcal Atomic # 14 Polarization: 32.87 SS G_CDS: 2.03 Total: 34.90 kcal Total: -51.89 7.88 -44.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244484264.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.803 kcal (2) G-P(sol) polarization free energy of solvation -51.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds