Wall clock time and date at job start Tue Mar 31 2020 05:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39383 * 120.15076 * 2 1 4 4 C 1.43192 * 120.08455 * 0.25235 * 3 2 1 5 5 N 3.48218 * 80.49897 * 0.16226 * 2 1 3 6 6 C 1.39732 * 119.83405 * 180.27201 * 3 2 1 7 7 C 1.38117 * 120.13828 * 359.97438 * 6 3 2 8 8 C 1.38045 * 120.30457 * 0.04035 * 7 6 3 9 9 C 1.39317 * 120.14356 * 180.27709 * 2 1 3 10 10 C 1.48020 * 120.07033 * 359.70116 * 9 2 1 11 11 C 1.40011 * 119.86139 * 309.72118 * 10 9 2 12 12 C 1.36200 * 120.18575 * 179.75770 * 11 10 9 13 13 C 1.40946 * 119.89519 * 0.52426 * 12 11 10 14 14 C 1.40951 * 120.13308 * 179.75662 * 13 12 11 15 15 H 1.08001 * 119.99992 * 154.28594 * 14 13 12 16 16 C 1.40005 * 120.00199 * 334.28922 * 14 13 12 17 17 N 1.30815 * 119.99927 * 343.29191 * 16 14 13 18 18 Si 1.86802 * 120.00018 * 163.29520 * 16 14 13 19 19 H 1.48502 * 109.46919 * 59.99807 * 18 16 14 20 20 H 1.48500 * 109.47035 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47173 * 299.99927 * 18 16 14 22 22 C 1.41164 * 119.72660 * 359.73392 * 13 12 11 23 23 F 1.35103 * 120.08999 * 179.97438 * 22 13 12 24 24 C 1.36575 * 119.81350 * 0.02562 * 22 13 12 25 25 H 1.09000 * 109.47080 * 269.73094 * 1 2 3 26 26 H 1.09007 * 109.46343 * 29.72318 * 1 2 3 27 27 H 1.08994 * 109.47182 * 149.72206 * 1 2 3 28 28 H 1.08005 * 119.93226 * 179.97438 * 6 3 2 29 29 H 1.07995 * 119.84536 * 180.02562 * 7 6 3 30 30 H 1.07997 * 119.91728 * 179.97438 * 8 7 6 31 31 H 1.08002 * 119.90822 * 0.02998 * 11 10 9 32 32 H 1.08001 * 120.05156 * 180.23659 * 12 11 10 33 33 H 0.97002 * 119.99714 * 180.02562 * 17 16 14 34 34 H 1.08000 * 119.95019 * 179.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2072 1.2053 0.0000 4 6 1.4963 2.4483 0.0055 5 7 0.9323 3.4344 0.0097 6 6 3.6044 1.1975 -0.0058 7 6 4.2913 -0.0007 -0.0109 8 6 3.6037 -1.1977 -0.0112 9 6 2.2067 -1.2048 -0.0058 10 6 1.4714 -2.4894 -0.0054 11 6 0.4559 -2.7111 0.9327 12 6 -0.2283 -3.8888 0.9359 13 6 0.0946 -4.8913 -0.0007 14 6 -0.6068 -6.1140 0.0015 15 1 -0.6799 -6.6962 -0.9052 16 6 -1.2087 -6.5737 1.1790 17 7 -0.8617 -6.0644 2.3329 18 14 -2.5073 -7.9143 1.1023 19 1 -1.9209 -9.1374 0.4979 20 1 -2.9841 -8.2206 2.4749 21 1 -3.6488 -7.4508 0.2732 22 6 1.1228 -4.6657 -0.9412 23 9 1.4387 -5.6218 -1.8419 24 6 1.7981 -3.4785 -0.9372 25 1 -0.3633 -0.0048 1.0277 26 1 -0.3632 0.8926 -0.5096 27 1 -0.3633 -0.8874 -0.5181 28 1 4.1485 2.1305 -0.0062 29 1 5.3712 -0.0012 -0.0149 30 1 4.1471 -2.1310 -0.0157 31 1 0.2113 -1.9443 1.6529 32 1 -1.0138 -4.0559 1.6580 33 1 -1.2785 -6.3832 3.1487 34 1 2.5855 -3.3037 -1.6555 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244814569.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:37 Heat of formation + Delta-G solvation = 10.639202 kcal Electronic energy + Delta-G solvation = -20207.192507 eV Core-core repulsion = 16983.428079 eV Total energy + Delta-G solvation = -3223.764428 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -47.34964 -39.62590 -37.45160 -36.24014 -34.21185 -32.70926 -31.66566 -29.38868 -29.15255 -27.04531 -25.37499 -23.45734 -21.83854 -21.13746 -20.24575 -18.18799 -17.60951 -15.93219 -15.75554 -15.59692 -15.21311 -14.65024 -14.45564 -14.11580 -14.04916 -13.80914 -13.02567 -12.90706 -12.88277 -12.76396 -12.67087 -12.12352 -12.07339 -12.00725 -11.76849 -11.40710 -11.28527 -11.08717 -11.01381 -10.70212 -10.62805 -9.98464 -9.75369 -9.42902 -8.71128 -8.54234 -7.67496 -7.42559 -7.04817 -4.60644 0.95179 1.41598 2.45844 2.72405 2.75315 2.93336 2.94898 2.98756 3.17735 3.73076 4.00818 4.02789 4.35088 4.94247 5.01775 5.21652 5.31077 5.37868 5.55747 5.78634 5.83691 5.89161 5.92759 5.97872 6.15847 6.29647 6.41100 6.43950 6.56477 6.70298 6.80408 6.86739 6.98629 7.04920 7.33286 7.43981 7.56650 7.75313 7.81485 7.88870 8.31238 8.48114 8.62636 9.85542 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.025715 B = 0.004275 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.601251 B = 6548.665404 C = 7152.920185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.038 4.038 3 C -0.039 4.039 4 C 0.268 3.732 5 N -0.437 5.437 6 C -0.092 4.092 7 C -0.125 4.125 8 C -0.091 4.091 9 C 0.010 3.990 10 C -0.187 4.187 11 C -0.077 4.077 12 C -0.155 4.155 13 C 0.095 3.905 14 C -0.439 4.439 15 H 0.086 0.914 16 C 0.075 3.925 17 N -0.776 5.776 18 Si 0.916 3.084 19 H -0.262 1.262 20 H -0.275 1.275 21 H -0.260 1.260 22 C -0.032 4.032 23 F -0.163 7.163 24 C -0.091 4.091 25 H 0.074 0.926 26 H 0.055 0.945 27 H 0.089 0.911 28 H 0.124 0.876 29 H 0.127 0.873 30 H 0.128 0.872 31 H 0.097 0.903 32 H 0.126 0.874 33 H 0.288 0.712 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.656 5.716 -0.916 7.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.041 4.041 3 C -0.042 4.042 4 C -0.047 4.047 5 N -0.113 5.113 6 C -0.113 4.113 7 C -0.143 4.143 8 C -0.110 4.110 9 C 0.010 3.990 10 C -0.188 4.188 11 C -0.096 4.096 12 C -0.174 4.174 13 C 0.092 3.908 14 C -0.467 4.467 15 H 0.104 0.896 16 C -0.146 4.146 17 N -0.399 5.399 18 Si 0.739 3.261 19 H -0.186 1.186 20 H -0.200 1.200 21 H -0.184 1.184 22 C -0.052 4.052 23 F -0.143 7.143 24 C -0.111 4.111 25 H 0.093 0.907 26 H 0.074 0.926 27 H 0.107 0.893 28 H 0.142 0.858 29 H 0.144 0.856 30 H 0.146 0.854 31 H 0.116 0.884 32 H 0.144 0.856 33 H 0.099 0.901 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.739 7.175 -0.671 8.119 hybrid contribution -0.124 -1.161 -0.027 1.168 sum 3.615 6.015 -0.698 7.052 Atomic orbital electron populations 1.20972 0.90676 1.03241 1.02807 1.20058 0.96174 0.90642 0.97234 1.15822 0.92300 0.86154 1.09969 1.25776 0.92977 0.92743 0.93156 1.81201 1.08831 1.11477 1.09781 1.20982 0.91613 0.98630 1.00047 1.20920 0.99832 0.91812 1.01703 1.21600 0.93706 0.98192 0.97522 1.18707 0.92274 0.92063 0.95936 1.17614 1.04497 0.93320 1.03379 1.20519 0.95201 0.97013 0.96835 1.20841 1.02324 0.91939 1.02306 1.17718 0.89155 0.93721 0.90249 1.19622 1.26558 1.03822 0.96689 0.89587 1.26014 0.96188 0.97815 0.94558 1.69782 1.34116 1.36951 0.99026 0.86216 0.80696 0.80605 0.78554 1.18623 1.19988 1.18436 1.17416 1.02405 0.88122 0.97306 1.91288 1.92618 1.63880 1.66474 1.20227 0.99443 0.92377 0.99016 0.90701 0.92609 0.89270 0.85822 0.85553 0.85393 0.88444 0.85612 0.90114 0.87905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.76 8.05 36.01 0.29 -1.47 16 2 C -0.04 -0.58 5.91 -103.79 -0.61 -1.19 16 3 C -0.04 -0.53 5.73 -106.99 -0.61 -1.14 16 4 C 0.27 3.85 13.79 -22.47 -0.31 3.54 16 5 N -0.44 -6.93 18.54 41.84 0.78 -6.15 16 6 C -0.09 -1.07 9.75 -39.07 -0.38 -1.45 16 7 C -0.12 -1.42 10.02 -39.70 -0.40 -1.82 16 8 C -0.09 -1.27 9.49 -39.10 -0.37 -1.64 16 9 C 0.01 0.17 5.46 -104.94 -0.57 -0.41 16 10 C -0.19 -3.58 4.73 -104.65 -0.49 -4.08 16 11 C -0.08 -1.56 7.84 -39.65 -0.31 -1.87 16 12 C -0.15 -3.56 8.62 -39.29 -0.34 -3.90 16 13 C 0.10 2.35 5.57 -106.73 -0.59 1.75 16 14 C -0.44 -10.91 8.75 -37.89 -0.33 -11.24 16 15 H 0.09 2.11 7.74 -52.49 -0.41 1.71 16 16 C 0.08 1.73 5.15 -17.32 -0.09 1.64 16 17 N -0.78 -18.18 10.95 55.55 0.61 -17.58 16 18 Si 0.92 17.24 29.59 -169.99 -5.03 12.21 16 19 H -0.26 -4.94 7.11 56.52 0.40 -4.53 16 20 H -0.28 -5.00 7.11 56.52 0.40 -4.60 16 21 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 22 C -0.03 -0.76 7.26 -39.07 -0.28 -1.05 16 23 F -0.16 -3.88 16.71 2.25 0.04 -3.84 16 24 C -0.09 -1.88 9.40 -39.61 -0.37 -2.25 16 25 H 0.07 1.04 7.49 -51.93 -0.39 0.65 16 26 H 0.05 0.77 7.08 -51.93 -0.37 0.40 16 27 H 0.09 1.41 6.49 -51.93 -0.34 1.07 16 28 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 29 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 30 H 0.13 1.69 8.03 -52.49 -0.42 1.27 16 31 H 0.10 1.77 6.86 -52.49 -0.36 1.41 16 32 H 0.13 2.97 6.19 -52.49 -0.32 2.65 16 33 H 0.29 6.10 8.30 -40.82 -0.34 5.76 16 34 H 0.10 1.89 8.03 -52.49 -0.42 1.47 16 LS Contribution 304.93 15.07 4.60 4.60 Total: -1.00 -25.37 304.93 -7.80 -33.18 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -3.01 Total: 4.17 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: -5.78 Total: -26.57 kcal Atomic # 7 Polarization: -25.11 SS G_CDS: 1.38 Total: -23.73 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.04 Total: -3.84 kcal Atomic # 14 Polarization: 17.24 SS G_CDS: -5.03 Total: 12.21 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -25.37 -7.80 -33.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244814569.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.817 kcal (2) G-P(sol) polarization free energy of solvation -25.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds