Wall clock time and date at job start Tue Mar 31 2020 05:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39383 * 120.15076 * 2 1 4 4 C 1.43192 * 120.08455 * 0.25235 * 3 2 1 5 5 N 3.48218 * 80.49897 * 0.16226 * 2 1 3 6 6 C 1.39732 * 119.83405 * 180.27201 * 3 2 1 7 7 C 1.38117 * 120.13828 * 359.97438 * 6 3 2 8 8 C 1.38045 * 120.30457 * 0.04035 * 7 6 3 9 9 C 1.39317 * 120.14356 * 180.27709 * 2 1 3 10 10 C 1.48020 * 120.07033 * 359.70116 * 9 2 1 11 11 C 1.40011 * 119.86139 * 309.72118 * 10 9 2 12 12 C 1.36200 * 120.18575 * 179.75770 * 11 10 9 13 13 C 1.40946 * 119.89519 * 0.52426 * 12 11 10 14 14 C 1.40951 * 120.13308 * 179.75662 * 13 12 11 15 15 H 1.08001 * 119.99992 * 154.28594 * 14 13 12 16 16 C 1.40005 * 120.00199 * 334.28922 * 14 13 12 17 17 N 1.30815 * 119.99927 * 343.29191 * 16 14 13 18 18 Si 1.86802 * 120.00018 * 163.29520 * 16 14 13 19 19 H 1.48502 * 109.46919 * 59.99807 * 18 16 14 20 20 H 1.48500 * 109.47035 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47173 * 299.99927 * 18 16 14 22 22 C 1.41164 * 119.72660 * 359.73392 * 13 12 11 23 23 F 1.35103 * 120.08999 * 179.97438 * 22 13 12 24 24 C 1.36575 * 119.81350 * 0.02562 * 22 13 12 25 25 H 1.09000 * 109.47080 * 269.73094 * 1 2 3 26 26 H 1.09007 * 109.46343 * 29.72318 * 1 2 3 27 27 H 1.08994 * 109.47182 * 149.72206 * 1 2 3 28 28 H 1.08005 * 119.93226 * 179.97438 * 6 3 2 29 29 H 1.07995 * 119.84536 * 180.02562 * 7 6 3 30 30 H 1.07997 * 119.91728 * 179.97438 * 8 7 6 31 31 H 1.08002 * 119.90822 * 0.02998 * 11 10 9 32 32 H 1.08001 * 120.05156 * 180.23659 * 12 11 10 33 33 H 0.97002 * 119.99714 * 180.02562 * 17 16 14 34 34 H 1.08000 * 119.95019 * 179.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2072 1.2053 0.0000 4 6 1.4963 2.4483 0.0055 5 7 0.9323 3.4344 0.0097 6 6 3.6044 1.1975 -0.0058 7 6 4.2913 -0.0007 -0.0109 8 6 3.6037 -1.1977 -0.0112 9 6 2.2067 -1.2048 -0.0058 10 6 1.4714 -2.4894 -0.0054 11 6 0.4559 -2.7111 0.9327 12 6 -0.2283 -3.8888 0.9359 13 6 0.0946 -4.8913 -0.0007 14 6 -0.6068 -6.1140 0.0015 15 1 -0.6799 -6.6962 -0.9052 16 6 -1.2087 -6.5737 1.1790 17 7 -0.8617 -6.0644 2.3329 18 14 -2.5073 -7.9143 1.1023 19 1 -1.9209 -9.1374 0.4979 20 1 -2.9841 -8.2206 2.4749 21 1 -3.6488 -7.4508 0.2732 22 6 1.1228 -4.6657 -0.9412 23 9 1.4387 -5.6218 -1.8419 24 6 1.7981 -3.4785 -0.9372 25 1 -0.3633 -0.0048 1.0277 26 1 -0.3632 0.8926 -0.5096 27 1 -0.3633 -0.8874 -0.5181 28 1 4.1485 2.1305 -0.0062 29 1 5.3712 -0.0012 -0.0149 30 1 4.1471 -2.1310 -0.0157 31 1 0.2113 -1.9443 1.6529 32 1 -1.0138 -4.0559 1.6580 33 1 -1.2785 -6.3832 3.1487 34 1 2.5855 -3.3037 -1.6555 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244814569.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:36 Heat of formation + Delta-G solvation = 1.042896 kcal Electronic energy + Delta-G solvation = -20207.608634 eV Core-core repulsion = 16983.428079 eV Total energy + Delta-G solvation = -3224.180555 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.18704 -40.82741 -39.02185 -37.44556 -35.83056 -33.89205 -33.01370 -31.03720 -30.70612 -28.26179 -26.91704 -24.68077 -23.29218 -22.77544 -21.57930 -19.45105 -19.32712 -17.52246 -17.28093 -16.65586 -16.56028 -16.32540 -15.95165 -15.92802 -15.28826 -15.06541 -14.46161 -14.33744 -14.11298 -13.97165 -13.89594 -13.68040 -13.56735 -13.32396 -13.21758 -12.84699 -12.77245 -12.49872 -12.27967 -12.12184 -12.01213 -11.67718 -11.39030 -11.09743 -9.97299 -9.66048 -9.36421 -9.04151 -8.72933 -6.41277 -0.13477 0.24844 0.88880 1.00666 1.37846 1.47907 1.51097 1.62342 2.00494 2.17171 2.60297 2.89971 2.97962 3.52967 3.83958 3.89756 4.08132 4.22560 4.26541 4.36741 4.52760 4.59397 4.71405 4.78425 4.83829 4.96498 5.02654 5.15005 5.21618 5.28101 5.39998 5.48939 5.58547 5.61863 5.77470 5.97190 6.04628 6.10215 6.15805 6.45486 6.54060 6.72410 6.86683 8.19618 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.025715 B = 0.004275 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.601251 B = 6548.665404 C = 7152.920185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.040 4.040 3 C -0.046 4.046 4 C 0.284 3.716 5 N -0.466 5.466 6 C -0.069 4.069 7 C -0.112 4.112 8 C -0.087 4.087 9 C -0.022 4.022 10 C -0.158 4.158 11 C -0.076 4.076 12 C -0.168 4.168 13 C 0.065 3.935 14 C -0.486 4.486 15 H 0.072 0.928 16 C 0.042 3.958 17 N -0.806 5.806 18 Si 0.982 3.018 19 H -0.263 1.263 20 H -0.261 1.261 21 H -0.259 1.259 22 C -0.062 4.062 23 F -0.172 7.172 24 C -0.094 4.094 25 H 0.080 0.920 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.157 0.843 29 H 0.166 0.834 30 H 0.134 0.866 31 H 0.118 0.882 32 H 0.113 0.887 33 H 0.295 0.705 34 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.562 7.761 -0.671 10.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.043 4.043 3 C -0.050 4.050 4 C -0.029 4.029 5 N -0.142 5.142 6 C -0.089 4.089 7 C -0.130 4.130 8 C -0.106 4.106 9 C -0.023 4.023 10 C -0.159 4.159 11 C -0.095 4.095 12 C -0.187 4.187 13 C 0.062 3.938 14 C -0.514 4.514 15 H 0.090 0.910 16 C -0.176 4.176 17 N -0.431 5.431 18 Si 0.802 3.198 19 H -0.187 1.187 20 H -0.185 1.185 21 H -0.183 1.183 22 C -0.082 4.082 23 F -0.151 7.151 24 C -0.112 4.112 25 H 0.098 0.902 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.175 0.825 29 H 0.184 0.816 30 H 0.152 0.848 31 H 0.136 0.864 32 H 0.131 0.869 33 H 0.106 0.894 34 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.658 9.239 -0.428 10.842 hybrid contribution -0.497 -1.498 -0.139 1.585 sum 5.161 7.741 -0.567 9.321 Atomic orbital electron populations 1.20934 0.91075 1.02640 1.02983 1.19999 0.96051 0.90925 0.97326 1.15856 0.93247 0.85031 1.10821 1.25812 0.92358 0.92498 0.92282 1.81232 1.09525 1.12502 1.10909 1.21435 0.90637 1.00283 0.96560 1.21294 1.01695 0.90354 0.99628 1.21769 0.92609 0.99834 0.96384 1.18540 0.93363 0.90619 0.99730 1.17934 1.02820 0.94168 1.01014 1.20750 0.95031 0.96380 0.97315 1.20817 1.02872 0.92835 1.02217 1.18022 0.90043 0.94373 0.91405 1.19721 1.29665 1.04839 0.97217 0.90986 1.26714 0.97456 0.99721 0.93686 1.69801 1.35226 1.38483 0.99561 0.85239 0.77903 0.77593 0.79028 1.18712 1.18454 1.18335 1.17757 1.03307 0.89272 0.97831 1.91247 1.92701 1.64463 1.66707 1.20490 0.99552 0.91587 0.99609 0.90190 0.92006 0.91070 0.82492 0.81612 0.84800 0.86395 0.86889 0.89376 0.85570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.36 8.05 71.24 0.57 -2.79 16 2 C -0.04 -1.11 5.91 -19.33 -0.11 -1.23 16 3 C -0.05 -1.08 5.73 -21.40 -0.12 -1.21 16 4 C 0.28 7.36 13.79 88.33 1.22 8.58 16 5 N -0.47 -13.75 18.54 19.00 0.35 -13.40 16 6 C -0.07 -1.22 9.75 22.60 0.22 -1.00 16 7 C -0.11 -1.92 10.02 22.19 0.22 -1.70 16 8 C -0.09 -2.08 9.49 22.58 0.21 -1.86 16 9 C -0.02 -0.67 5.46 -20.07 -0.11 -0.78 16 10 C -0.16 -5.95 4.73 -19.88 -0.09 -6.04 16 11 C -0.08 -3.11 7.84 22.22 0.17 -2.93 16 12 C -0.17 -8.06 8.62 22.46 0.19 -7.86 16 13 C 0.06 3.36 5.57 -21.23 -0.12 3.24 16 14 C -0.49 -25.67 8.75 23.36 0.20 -25.47 16 15 H 0.07 3.82 7.74 -2.91 -0.02 3.79 16 16 C 0.04 2.01 5.15 85.27 0.44 2.45 16 17 N -0.81 -39.29 10.95 21.84 0.24 -39.05 16 18 Si 0.98 36.45 29.59 68.60 2.03 38.48 16 19 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 20 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 21 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 22 C -0.06 -3.01 7.26 22.60 0.16 -2.85 16 23 F -0.17 -8.52 16.71 44.97 0.75 -7.77 16 24 C -0.09 -3.84 9.40 22.25 0.21 -3.63 16 25 H 0.08 2.13 7.49 -2.39 -0.02 2.11 16 26 H 0.06 1.63 7.08 -2.38 -0.02 1.61 16 27 H 0.07 2.24 6.49 -2.39 -0.02 2.23 16 28 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 29 H 0.17 1.66 8.06 -2.91 -0.02 1.64 16 30 H 0.13 3.05 8.03 -2.91 -0.02 3.02 16 31 H 0.12 4.23 6.86 -2.91 -0.02 4.21 16 32 H 0.11 5.63 6.19 -2.91 -0.02 5.61 16 33 H 0.30 12.87 8.30 -92.71 -0.77 12.10 16 34 H 0.13 4.49 8.03 -2.91 -0.02 4.46 16 Total: -1.00 -57.94 304.93 7.79 -50.15 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 1.15 Total: 16.67 kcal Atomic # 6 Polarization: -48.35 SS G_CDS: 3.27 Total: -45.08 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: 0.59 Total: -52.45 kcal Atomic # 9 Polarization: -8.52 SS G_CDS: 0.75 Total: -7.77 kcal Atomic # 14 Polarization: 36.45 SS G_CDS: 2.03 Total: 38.48 kcal Total: -57.94 7.79 -50.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244814569.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.192 kcal (2) G-P(sol) polarization free energy of solvation -57.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds