Wall clock time and date at job start Tue Mar 31 2020 05:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39469 * 120.13622 * 2 1 4 4 C 1.43202 * 120.08989 * 0.05052 * 3 2 1 5 5 N 3.48300 * 80.49883 * 0.03066 * 2 1 3 6 6 C 1.39669 * 119.81829 * 180.25043 * 3 2 1 7 7 C 1.38060 * 120.08891 * 359.79652 * 6 3 2 8 8 C 1.38124 * 120.27848 * 359.97387 * 7 6 3 9 9 C 1.39052 * 120.14432 * 179.77474 * 2 1 3 10 10 C 1.48405 * 120.04265 * 359.97023 * 9 2 1 11 11 C 1.39578 * 120.01646 * 244.72613 * 10 9 2 12 12 C 1.38466 * 120.42537 * 180.02562 * 11 10 9 13 13 C 1.37667 * 120.44673 * 359.97438 * 12 11 10 14 14 C 1.40741 * 120.01933 * 359.97438 * 13 12 11 15 15 C 1.41319 * 120.20628 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99761 * 154.60114 * 15 14 13 17 17 C 1.39930 * 120.00063 * 334.60146 * 15 14 13 18 18 N 1.30845 * 119.99897 * 343.00063 * 17 15 14 19 19 Si 1.86799 * 119.99766 * 162.99899 * 17 15 14 20 20 H 1.48499 * 109.47016 * 60.00233 * 19 17 15 21 21 H 1.48501 * 109.46844 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47416 * 300.00196 * 19 17 15 23 23 C 1.39057 * 120.01122 * 64.96922 * 10 9 2 24 24 F 1.35098 * 120.22411 * 0.02562 * 23 10 9 25 25 H 1.08994 * 109.46812 * 270.22552 * 1 2 3 26 26 H 1.08997 * 109.47311 * 30.22745 * 1 2 3 27 27 H 1.09001 * 109.46533 * 150.22623 * 1 2 3 28 28 H 1.07993 * 119.95904 * 179.77324 * 6 3 2 29 29 H 1.07992 * 119.86076 * 179.97438 * 7 6 3 30 30 H 1.07995 * 119.90105 * 180.02562 * 8 7 6 31 31 H 1.08008 * 119.79121 * 0.02562 * 11 10 9 32 32 H 1.08001 * 119.77699 * 179.97438 * 12 11 10 33 33 H 1.08002 * 119.98526 * 179.97438 * 13 12 11 34 34 H 0.97001 * 119.99723 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2072 1.2062 0.0000 4 6 1.4961 2.4492 0.0011 5 7 0.9321 3.4352 0.0018 6 6 3.6039 1.1984 -0.0053 7 6 4.2894 0.0001 -0.0063 8 6 3.5999 -1.1967 -0.0015 9 6 2.2053 -1.2025 0.0047 10 6 1.4675 -2.4901 0.0105 11 6 1.5685 -3.3479 1.1069 12 6 0.8842 -4.5515 1.1210 13 6 0.0949 -4.9178 0.0542 14 6 -0.0213 -4.0666 -1.0607 15 6 -0.8300 -4.4389 -2.1582 16 1 -1.2532 -3.6796 -2.7992 17 6 -1.0825 -5.7912 -2.4143 18 7 -0.3288 -6.7119 -1.8702 19 14 -2.4958 -6.2818 -3.5330 20 1 -2.2871 -5.6942 -4.8808 21 1 -2.5501 -7.7618 -3.6418 22 1 -3.7731 -5.7793 -2.9664 23 6 0.6792 -2.8448 -1.0788 24 9 0.5820 -2.0209 -2.1450 25 1 -0.3633 0.0040 1.0276 26 1 -0.3634 0.8879 -0.5173 27 1 -0.3632 -0.8920 -0.5103 28 1 4.1484 2.1311 -0.0090 29 1 5.3693 -0.0016 -0.0108 30 1 4.1423 -2.1306 -0.0019 31 1 2.1845 -3.0710 1.9499 32 1 0.9703 -5.2075 1.9746 33 1 -0.4352 -5.8585 0.0728 34 1 -0.5036 -7.6493 -2.0481 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244814738.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:38 Heat of formation + Delta-G solvation = 14.523467 kcal Electronic energy + Delta-G solvation = -20605.511830 eV Core-core repulsion = 17381.915836 eV Total energy + Delta-G solvation = -3223.595994 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -47.39845 -39.58690 -37.35403 -36.25651 -34.06285 -32.74330 -31.78413 -29.77371 -28.45088 -26.81084 -25.41831 -23.64763 -22.06449 -20.93776 -20.30214 -18.43014 -16.96701 -16.13037 -15.81256 -15.65834 -15.36315 -14.74567 -14.43728 -14.20236 -13.99245 -13.62563 -12.96981 -12.91633 -12.86204 -12.78191 -12.69923 -12.07037 -12.00279 -11.76390 -11.66952 -11.39990 -11.20989 -11.12544 -10.98685 -10.82099 -10.54115 -9.97008 -9.72267 -9.33739 -8.71847 -8.54698 -7.62486 -7.39707 -6.92987 -4.54109 0.92323 1.40996 2.52190 2.56785 2.75767 2.99393 3.02180 3.06578 3.12037 3.82220 3.98528 4.00624 4.40674 4.89070 4.96314 5.15933 5.26090 5.35817 5.52498 5.74044 5.81680 5.86995 5.92572 6.02456 6.14944 6.37147 6.41438 6.45006 6.53770 6.71520 6.73597 6.93390 6.99276 7.04883 7.34474 7.44887 7.56792 7.77132 7.83614 7.94044 8.38835 8.60926 8.68451 10.00323 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.024085 B = 0.004882 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.278933 B = 5733.617215 C = 6321.925896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.016 4.016 3 C -0.044 4.044 4 C 0.268 3.732 5 N -0.434 5.434 6 C -0.078 4.078 7 C -0.130 4.130 8 C -0.073 4.073 9 C -0.019 4.019 10 C -0.068 4.068 11 C -0.199 4.199 12 C -0.111 4.111 13 C -0.139 4.139 14 C 0.086 3.914 15 C -0.454 4.454 16 H 0.083 0.917 17 C 0.077 3.923 18 N -0.789 5.789 19 Si 0.912 3.088 20 H -0.264 1.264 21 H -0.277 1.277 22 H -0.262 1.262 23 C -0.009 4.009 24 F -0.156 7.156 25 H 0.075 0.925 26 H 0.060 0.940 27 H 0.093 0.907 28 H 0.127 0.873 29 H 0.130 0.870 30 H 0.131 0.869 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.126 0.874 34 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.475 4.810 3.696 8.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.019 4.019 3 C -0.047 4.047 4 C -0.047 4.047 5 N -0.110 5.110 6 C -0.098 4.098 7 C -0.148 4.148 8 C -0.092 4.092 9 C -0.019 4.019 10 C -0.069 4.069 11 C -0.218 4.218 12 C -0.130 4.130 13 C -0.159 4.159 14 C 0.082 3.918 15 C -0.482 4.482 16 H 0.101 0.899 17 C -0.141 4.141 18 N -0.413 5.413 19 Si 0.736 3.264 20 H -0.188 1.188 21 H -0.202 1.202 22 H -0.186 1.186 23 C -0.030 4.030 24 F -0.135 7.135 25 H 0.094 0.906 26 H 0.079 0.921 27 H 0.111 0.889 28 H 0.145 0.855 29 H 0.148 0.852 30 H 0.149 0.851 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.144 0.856 34 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.626 6.110 3.646 8.487 hybrid contribution -0.265 -0.634 -0.707 0.986 sum 4.361 5.477 2.939 7.593 Atomic orbital electron populations 1.21026 0.90481 1.04163 1.02849 1.20030 0.96372 0.90569 0.94890 1.15814 0.92325 0.86201 1.10376 1.25694 0.93053 0.92698 0.93218 1.81196 1.08620 1.11457 1.09687 1.21038 0.91613 0.98782 0.98416 1.20940 0.99994 0.91677 1.02221 1.21521 0.93304 0.98489 0.95885 1.18725 0.92797 0.92175 0.98212 1.18141 0.99986 0.93289 0.95447 1.20203 1.07514 0.96112 0.98000 1.20662 0.98486 0.95744 0.98074 1.21265 1.01547 1.01182 0.91874 1.17549 0.91041 0.89457 0.93713 1.19486 1.26055 0.92481 1.10208 0.89893 1.25895 0.96090 0.96241 0.95920 1.69788 1.32633 1.02369 1.36554 0.86280 0.81525 0.77838 0.80719 1.18803 1.20157 1.18620 1.17743 1.05804 0.93820 0.85604 1.91288 1.95474 1.71469 1.55281 0.90626 0.92126 0.88868 0.85498 0.85197 0.85064 0.88261 0.88451 0.85624 0.90452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 9.07 36.01 0.33 -1.81 16 2 C -0.02 -0.26 5.77 -103.86 -0.60 -0.86 16 3 C -0.04 -0.63 5.73 -106.98 -0.61 -1.24 16 4 C 0.27 4.03 13.80 -22.47 -0.31 3.72 16 5 N -0.43 -7.12 18.54 41.84 0.78 -6.34 16 6 C -0.08 -0.93 9.75 -39.11 -0.38 -1.31 16 7 C -0.13 -1.51 10.02 -39.69 -0.40 -1.91 16 8 C -0.07 -1.05 9.72 -39.17 -0.38 -1.43 16 9 C -0.02 -0.33 5.00 -104.95 -0.52 -0.85 16 10 C -0.07 -1.37 4.62 -104.91 -0.48 -1.86 16 11 C -0.20 -3.89 9.73 -39.00 -0.38 -4.27 16 12 C -0.11 -2.30 10.01 -39.71 -0.40 -2.69 16 13 C -0.14 -3.27 8.68 -38.85 -0.34 -3.61 16 14 C 0.09 2.13 5.57 -106.79 -0.59 1.54 16 15 C -0.45 -11.49 8.77 -37.78 -0.33 -11.82 16 16 H 0.08 2.09 7.75 -52.48 -0.41 1.68 16 17 C 0.08 1.83 5.15 -17.34 -0.09 1.75 16 18 N -0.79 -19.02 10.96 55.55 0.61 -18.41 16 19 Si 0.91 17.84 29.59 -169.99 -5.03 12.81 16 20 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 21 H -0.28 -5.23 7.11 56.52 0.40 -4.83 16 22 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 23 C -0.01 -0.22 5.76 -38.29 -0.22 -0.44 16 24 F -0.16 -3.67 15.00 2.25 0.03 -3.63 16 25 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 26 H 0.06 0.95 7.10 -51.93 -0.37 0.58 16 27 H 0.09 1.76 4.75 -51.93 -0.25 1.52 16 28 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 29 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 30 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 31 H 0.10 1.70 8.06 -52.48 -0.42 1.28 16 32 H 0.10 1.76 8.06 -52.49 -0.42 1.33 16 33 H 0.13 3.04 6.18 -52.49 -0.32 2.72 16 34 H 0.28 6.23 8.30 -40.82 -0.34 5.89 16 LS Contribution 305.05 15.07 4.60 4.60 Total: -1.00 -26.14 305.05 -7.75 -33.88 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -3.02 Total: 4.20 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: -5.71 Total: -27.10 kcal Atomic # 7 Polarization: -26.14 SS G_CDS: 1.38 Total: -24.75 kcal Atomic # 9 Polarization: -3.67 SS G_CDS: 0.03 Total: -3.63 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.81 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -26.14 -7.75 -33.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244814738.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.406 kcal (2) G-P(sol) polarization free energy of solvation -26.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds