Wall clock time and date at job start Tue Mar 31 2020 05:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39461 * 120.13860 * 2 1 4 4 C 1.43197 * 120.09159 * 359.70162 * 3 2 1 5 5 N 3.48297 * 80.50222 * 359.80498 * 2 1 3 6 6 C 1.39676 * 119.81303 * 179.97438 * 3 2 1 7 7 C 1.38055 * 120.08865 * 0.02562 * 6 3 2 8 8 C 1.38120 * 120.27702 * 359.97438 * 7 6 3 9 9 C 1.39050 * 120.13474 * 179.97438 * 2 1 3 10 10 C 1.48425 * 120.04689 * 0.04493 * 9 2 1 11 11 C 1.39688 * 119.98422 * 55.97491 * 10 9 2 12 12 C 1.38626 * 120.34793 * 179.97438 * 11 10 9 13 13 F 1.35097 * 119.83356 * 180.02562 * 12 11 10 14 14 C 1.37936 * 120.33101 * 0.02855 * 12 11 10 15 15 C 1.40717 * 119.96337 * 359.97276 * 14 12 11 16 16 C 1.41426 * 120.17188 * 180.02562 * 15 14 12 17 17 H 1.07994 * 119.99978 * 24.93525 * 16 15 14 18 18 C 1.39931 * 119.99506 * 204.93519 * 16 15 14 19 19 N 1.30827 * 120.00077 * 17.78613 * 18 16 15 20 20 Si 1.86803 * 119.99435 * 197.79305 * 18 16 15 21 21 H 1.48492 * 109.47473 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47045 * 120.00167 * 20 18 16 23 23 H 1.48507 * 109.46809 * 239.99842 * 20 18 16 24 24 C 1.38727 * 119.98857 * 235.70111 * 10 9 2 25 25 H 1.09002 * 109.46535 * 90.57748 * 1 2 3 26 26 H 1.08995 * 109.47194 * 210.58096 * 1 2 3 27 27 H 1.09000 * 109.47016 * 330.57873 * 1 2 3 28 28 H 1.08000 * 119.95207 * 179.97438 * 6 3 2 29 29 H 1.07995 * 119.85466 * 180.02562 * 7 6 3 30 30 H 1.08004 * 119.90021 * 179.97438 * 8 7 6 31 31 H 1.07993 * 119.82568 * 0.02562 * 11 10 9 32 32 H 1.07997 * 120.02000 * 179.97438 * 14 12 11 33 33 H 0.96998 * 119.99562 * 179.97438 * 19 18 16 34 34 H 1.08009 * 120.15819 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2073 1.2061 0.0000 4 6 1.4963 2.4491 -0.0065 5 7 0.9323 3.4352 -0.0117 6 6 3.6040 1.1981 0.0005 7 6 4.2894 -0.0003 0.0005 8 6 3.5996 -1.1969 0.0005 9 6 2.2052 -1.2026 0.0005 10 6 1.4671 -2.4903 0.0001 11 6 0.5333 -2.7594 -1.0033 12 6 -0.1599 -3.9599 -1.0113 13 9 -1.0604 -4.2095 -1.9870 14 6 0.0651 -4.9007 -0.0280 15 6 1.0027 -4.6437 0.9893 16 6 1.2373 -5.6055 1.9993 17 1 1.0387 -6.6495 1.8073 18 6 1.7268 -5.2042 3.2473 19 7 1.6426 -3.9502 3.6105 20 14 2.5005 -6.4591 4.3944 21 1 2.4743 -7.7983 3.7533 22 1 3.9062 -6.0719 4.6759 23 1 1.7355 -6.5048 5.6665 24 6 1.7091 -3.4285 0.9929 25 1 -0.3632 -0.0104 -1.0277 26 1 -0.3633 -0.8847 0.5228 27 1 -0.3633 0.8951 0.5048 28 1 4.1486 2.1308 0.0001 29 1 5.3693 -0.0020 0.0014 30 1 4.1419 -2.1310 0.0001 31 1 0.3510 -2.0287 -1.7773 32 1 -0.4781 -5.8341 -0.0389 33 1 1.9816 -3.6721 4.4758 34 1 2.4342 -3.2247 1.7671 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244820335.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:42 Heat of formation + Delta-G solvation = 9.320624 kcal Electronic energy + Delta-G solvation = -20378.664773 eV Core-core repulsion = 17154.843167 eV Total energy + Delta-G solvation = -3223.821606 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -47.83938 -39.66141 -37.42318 -36.22305 -34.00320 -32.72466 -31.86531 -29.58083 -28.52364 -26.79152 -25.56536 -23.65664 -22.01819 -21.13815 -20.25259 -18.36753 -17.24942 -15.80100 -15.68519 -15.47148 -15.19162 -14.84749 -14.74536 -14.47067 -14.09251 -13.89681 -13.19089 -12.91964 -12.87712 -12.77310 -12.65868 -12.31068 -12.09114 -11.79850 -11.65901 -11.28842 -11.17892 -11.12754 -11.06085 -10.63619 -10.46279 -10.27430 -9.72489 -9.38083 -8.71593 -8.53814 -7.64372 -7.38227 -6.99161 -4.62126 0.94919 1.41429 2.48529 2.60600 2.76409 2.97366 2.98632 3.03059 3.15481 3.77802 3.99963 4.03201 4.34920 4.90870 4.98772 5.17324 5.28955 5.34292 5.55946 5.65522 5.83355 5.87755 5.92524 6.05926 6.18692 6.37962 6.43380 6.50457 6.55916 6.68970 6.75359 6.88831 6.96243 7.02354 7.31952 7.45247 7.57672 7.66925 7.78397 7.98451 8.34176 8.62202 8.64201 9.95036 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.014978 B = 0.005667 C = 0.004614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.927276 B = 4939.535354 C = 6067.625985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.023 4.023 3 C -0.043 4.043 4 C 0.268 3.732 5 N -0.436 5.436 6 C -0.080 4.080 7 C -0.128 4.128 8 C -0.074 4.074 9 C -0.014 4.014 10 C -0.027 4.027 11 C -0.258 4.258 12 C 0.116 3.884 13 F -0.167 7.167 14 C -0.257 4.257 15 C 0.128 3.872 16 C -0.454 4.454 17 H 0.083 0.917 18 C 0.077 3.923 19 N -0.783 5.783 20 Si 0.910 3.090 21 H -0.259 1.259 22 H -0.270 1.270 23 H -0.273 1.273 24 C -0.144 4.144 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.057 0.943 28 H 0.126 0.874 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.284 0.716 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.419 3.896 -2.696 7.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.026 4.026 3 C -0.047 4.047 4 C -0.046 4.046 5 N -0.111 5.111 6 C -0.101 4.101 7 C -0.146 4.146 8 C -0.093 4.093 9 C -0.014 4.014 10 C -0.027 4.027 11 C -0.278 4.278 12 C 0.097 3.903 13 F -0.146 7.146 14 C -0.278 4.278 15 C 0.125 3.875 16 C -0.482 4.482 17 H 0.102 0.898 18 C -0.143 4.143 19 N -0.407 5.407 20 Si 0.734 3.266 21 H -0.182 1.182 22 H -0.195 1.195 23 H -0.198 1.198 24 C -0.163 4.163 25 H 0.094 0.906 26 H 0.108 0.892 27 H 0.076 0.924 28 H 0.144 0.856 29 H 0.148 0.852 30 H 0.150 0.850 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.096 0.904 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.544 5.583 -2.527 7.629 hybrid contribution 0.369 -0.898 0.480 1.082 sum 4.913 4.685 -2.047 7.091 Atomic orbital electron populations 1.20957 0.90479 1.03487 1.02843 1.20001 0.96308 0.90563 0.95711 1.15811 0.92323 0.86179 1.10369 1.25717 0.93020 0.92712 0.93175 1.81199 1.08711 1.11449 1.09761 1.21025 0.91621 0.98752 0.98679 1.20941 1.00006 0.91688 1.01997 1.21540 0.93391 0.98530 0.95836 1.18799 0.92736 0.92250 0.97619 1.18056 0.96659 0.91954 0.96078 1.20200 1.05945 0.97978 1.03711 1.17388 0.90162 0.95613 0.87090 1.91347 1.66457 1.94829 1.61935 1.21007 1.05856 1.00532 1.00376 1.17306 0.87768 0.92017 0.90426 1.19644 1.37411 0.95384 0.95800 0.89846 1.25946 0.93375 0.96035 0.98906 1.69804 1.32927 1.17264 1.20725 0.86222 0.79409 0.81469 0.79534 1.18207 1.19461 1.19814 1.21460 1.02174 0.94283 0.98412 0.90640 0.89208 0.92388 0.85582 0.85244 0.85002 0.87917 0.87683 0.90446 0.85506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.91 8.21 36.01 0.30 -1.61 16 2 C -0.02 -0.37 5.91 -103.86 -0.61 -0.98 16 3 C -0.04 -0.62 5.73 -106.98 -0.61 -1.23 16 4 C 0.27 3.99 13.79 -22.47 -0.31 3.68 16 5 N -0.44 -7.09 18.54 41.84 0.78 -6.32 16 6 C -0.08 -0.96 9.75 -39.11 -0.38 -1.34 16 7 C -0.13 -1.52 10.02 -39.69 -0.40 -1.92 16 8 C -0.07 -1.09 9.59 -39.18 -0.38 -1.46 16 9 C -0.01 -0.24 5.39 -104.95 -0.57 -0.80 16 10 C -0.03 -0.55 4.47 -104.98 -0.47 -1.02 16 11 C -0.26 -5.29 8.14 -38.90 -0.32 -5.61 16 12 C 0.12 2.56 7.28 -39.55 -0.29 2.27 16 13 F -0.17 -3.54 17.26 2.25 0.04 -3.50 16 14 C -0.26 -5.96 9.76 -38.76 -0.38 -6.33 16 15 C 0.13 3.08 5.56 -106.87 -0.59 2.48 16 16 C -0.45 -10.90 9.05 -37.74 -0.34 -11.25 16 17 H 0.08 1.94 7.91 -52.49 -0.41 1.53 16 18 C 0.08 1.74 5.13 -17.35 -0.09 1.65 16 19 N -0.78 -18.27 11.00 55.55 0.61 -17.66 16 20 Si 0.91 16.98 29.59 -169.99 -5.03 11.95 16 21 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 22 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 23 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 24 C -0.14 -3.27 8.23 -38.53 -0.32 -3.58 16 25 H 0.08 1.11 7.79 -51.93 -0.40 0.70 16 26 H 0.09 1.58 6.69 -51.93 -0.35 1.23 16 27 H 0.06 0.86 7.07 -51.93 -0.37 0.49 16 28 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 29 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 30 H 0.13 1.84 8.06 -52.48 -0.42 1.41 16 31 H 0.10 1.94 7.45 -52.49 -0.39 1.55 16 32 H 0.11 2.34 8.06 -52.49 -0.42 1.91 16 33 H 0.28 6.03 8.30 -40.82 -0.34 5.70 16 34 H 0.13 2.95 6.21 -52.48 -0.33 2.63 16 LS Contribution 307.38 15.07 4.63 4.63 Total: -1.00 -25.13 307.38 -7.81 -32.93 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -3.08 Total: 5.01 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: -5.76 Total: -27.05 kcal Atomic # 7 Polarization: -25.37 SS G_CDS: 1.39 Total: -23.98 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.04 Total: -3.50 kcal Atomic # 14 Polarization: 16.98 SS G_CDS: -5.03 Total: 11.95 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -25.13 -7.81 -32.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244820335.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.254 kcal (2) G-P(sol) polarization free energy of solvation -25.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds