Wall clock time and date at job start Tue Mar 31 2020 05:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39461 * 120.13860 * 2 1 4 4 C 1.43197 * 120.09159 * 359.70162 * 3 2 1 5 5 N 3.48297 * 80.50222 * 359.80498 * 2 1 3 6 6 C 1.39676 * 119.81303 * 179.97438 * 3 2 1 7 7 C 1.38055 * 120.08865 * 0.02562 * 6 3 2 8 8 C 1.38120 * 120.27702 * 359.97438 * 7 6 3 9 9 C 1.39050 * 120.13474 * 179.97438 * 2 1 3 10 10 C 1.48425 * 120.04689 * 0.04493 * 9 2 1 11 11 C 1.39688 * 119.98422 * 55.97491 * 10 9 2 12 12 C 1.38626 * 120.34793 * 179.97438 * 11 10 9 13 13 F 1.35097 * 119.83356 * 180.02562 * 12 11 10 14 14 C 1.37936 * 120.33101 * 0.02855 * 12 11 10 15 15 C 1.40717 * 119.96337 * 359.97276 * 14 12 11 16 16 C 1.41426 * 120.17188 * 180.02562 * 15 14 12 17 17 H 1.07994 * 119.99978 * 24.93525 * 16 15 14 18 18 C 1.39931 * 119.99506 * 204.93519 * 16 15 14 19 19 N 1.30827 * 120.00077 * 17.78613 * 18 16 15 20 20 Si 1.86803 * 119.99435 * 197.79305 * 18 16 15 21 21 H 1.48492 * 109.47473 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47045 * 120.00167 * 20 18 16 23 23 H 1.48507 * 109.46809 * 239.99842 * 20 18 16 24 24 C 1.38727 * 119.98857 * 235.70111 * 10 9 2 25 25 H 1.09002 * 109.46535 * 90.57748 * 1 2 3 26 26 H 1.08995 * 109.47194 * 210.58096 * 1 2 3 27 27 H 1.09000 * 109.47016 * 330.57873 * 1 2 3 28 28 H 1.08000 * 119.95207 * 179.97438 * 6 3 2 29 29 H 1.07995 * 119.85466 * 180.02562 * 7 6 3 30 30 H 1.08004 * 119.90021 * 179.97438 * 8 7 6 31 31 H 1.07993 * 119.82568 * 0.02562 * 11 10 9 32 32 H 1.07997 * 120.02000 * 179.97438 * 14 12 11 33 33 H 0.96998 * 119.99562 * 179.97438 * 19 18 16 34 34 H 1.08009 * 120.15819 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2073 1.2061 0.0000 4 6 1.4963 2.4491 -0.0065 5 7 0.9323 3.4352 -0.0117 6 6 3.6040 1.1981 0.0005 7 6 4.2894 -0.0003 0.0005 8 6 3.5996 -1.1969 0.0005 9 6 2.2052 -1.2026 0.0005 10 6 1.4671 -2.4903 0.0001 11 6 0.5333 -2.7594 -1.0033 12 6 -0.1599 -3.9599 -1.0113 13 9 -1.0604 -4.2095 -1.9870 14 6 0.0651 -4.9007 -0.0280 15 6 1.0027 -4.6437 0.9893 16 6 1.2373 -5.6055 1.9993 17 1 1.0387 -6.6495 1.8073 18 6 1.7268 -5.2042 3.2473 19 7 1.6426 -3.9502 3.6105 20 14 2.5005 -6.4591 4.3944 21 1 2.4743 -7.7983 3.7533 22 1 3.9062 -6.0719 4.6759 23 1 1.7355 -6.5048 5.6665 24 6 1.7091 -3.4285 0.9929 25 1 -0.3632 -0.0104 -1.0277 26 1 -0.3633 -0.8847 0.5228 27 1 -0.3633 0.8951 0.5048 28 1 4.1486 2.1308 0.0001 29 1 5.3693 -0.0020 0.0014 30 1 4.1419 -2.1310 0.0001 31 1 0.3510 -2.0287 -1.7773 32 1 -0.4781 -5.8341 -0.0389 33 1 1.9816 -3.6721 4.4758 34 1 2.4342 -3.2247 1.7671 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244820335.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:41 Heat of formation + Delta-G solvation = 0.334037 kcal Electronic energy + Delta-G solvation = -20379.054461 eV Core-core repulsion = 17154.843167 eV Total energy + Delta-G solvation = -3224.211294 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.58589 -40.88718 -39.01435 -37.46215 -35.64782 -34.00182 -33.18983 -31.26345 -30.01250 -28.04448 -27.30367 -24.86914 -23.41785 -22.86195 -21.59770 -19.78702 -18.78969 -17.40113 -16.97500 -16.74852 -16.68399 -16.57469 -16.36143 -16.15270 -15.32775 -15.16416 -14.67440 -14.18863 -14.12061 -14.05438 -13.99577 -13.81392 -13.52370 -13.27012 -12.97976 -12.83894 -12.70130 -12.47971 -12.35754 -12.17396 -12.00978 -11.90692 -11.34868 -11.05810 -10.00373 -9.69645 -9.33888 -9.02531 -8.69250 -6.43366 -0.18008 0.21625 0.85504 0.92669 1.43578 1.49726 1.57777 1.59135 1.96322 2.22025 2.60469 2.85150 2.92940 3.56325 3.61481 3.83083 3.93081 4.12694 4.21680 4.44719 4.52664 4.64037 4.66081 4.72340 4.77961 4.92969 4.97701 5.10232 5.19073 5.23419 5.35966 5.39796 5.59135 5.63228 5.69475 5.92480 5.97191 6.01300 6.24439 6.42043 6.57364 6.85308 6.87202 8.27290 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.014978 B = 0.005667 C = 0.004614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.927276 B = 4939.535354 C = 6067.625985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.032 4.032 3 C -0.048 4.048 4 C 0.285 3.715 5 N -0.462 5.462 6 C -0.060 4.060 7 C -0.113 4.113 8 C -0.077 4.077 9 C -0.047 4.047 10 C -0.011 4.011 11 C -0.253 4.253 12 C 0.108 3.892 13 F -0.163 7.163 14 C -0.280 4.280 15 C 0.105 3.895 16 C -0.488 4.488 17 H 0.079 0.921 18 C 0.044 3.956 19 N -0.811 5.811 20 Si 0.980 3.020 21 H -0.260 1.260 22 H -0.259 1.259 23 H -0.269 1.269 24 C -0.161 4.161 25 H 0.083 0.917 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.163 0.837 29 H 0.171 0.829 30 H 0.134 0.866 31 H 0.121 0.879 32 H 0.102 0.898 33 H 0.293 0.707 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.638 5.350 -2.609 9.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.035 4.035 3 C -0.052 4.052 4 C -0.029 4.029 5 N -0.138 5.138 6 C -0.080 4.080 7 C -0.131 4.131 8 C -0.095 4.095 9 C -0.047 4.047 10 C -0.012 4.012 11 C -0.273 4.273 12 C 0.089 3.911 13 F -0.142 7.142 14 C -0.300 4.300 15 C 0.102 3.898 16 C -0.517 4.517 17 H 0.097 0.903 18 C -0.173 4.173 19 N -0.435 5.435 20 Si 0.800 3.200 21 H -0.183 1.183 22 H -0.183 1.183 23 H -0.194 1.194 24 C -0.181 4.181 25 H 0.102 0.898 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.180 0.820 29 H 0.188 0.812 30 H 0.152 0.848 31 H 0.139 0.861 32 H 0.120 0.880 33 H 0.104 0.896 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.753 7.045 -2.457 10.063 hybrid contribution -0.308 -1.238 0.376 1.330 sum 6.445 5.806 -2.081 8.921 Atomic orbital electron populations 1.20884 0.91042 1.02442 1.03056 1.19937 0.96099 0.90955 0.96462 1.15843 0.93336 0.84980 1.10996 1.25730 0.92417 0.92447 0.92339 1.81226 1.09344 1.12413 1.10822 1.21480 0.90568 1.00413 0.95510 1.21330 1.01878 0.90170 0.99696 1.21699 0.92359 1.00131 0.95348 1.18681 0.93876 0.90950 1.01166 1.18287 0.95677 0.92795 0.94417 1.20454 1.05274 0.97529 1.04013 1.17536 0.90498 0.96014 0.87034 1.91345 1.66343 1.94876 1.61660 1.21085 1.06627 1.01085 1.01242 1.17618 0.88302 0.92973 0.90882 1.19858 1.39512 0.95286 0.97022 0.90327 1.26679 0.93070 0.97846 0.99741 1.69840 1.33317 1.18792 1.21567 0.85182 0.78764 0.78766 0.77242 1.18325 1.18344 1.19365 1.21413 1.02657 0.94801 0.99196 0.89829 0.91775 0.91856 0.81958 0.81179 0.84826 0.86083 0.87953 0.89642 0.86399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.67 8.21 71.24 0.59 -3.09 16 2 C -0.03 -0.98 5.91 -19.37 -0.11 -1.09 16 3 C -0.05 -1.23 5.73 -21.39 -0.12 -1.35 16 4 C 0.28 7.81 13.79 88.33 1.22 9.03 16 5 N -0.46 -14.22 18.54 19.00 0.35 -13.86 16 6 C -0.06 -1.15 9.75 22.57 0.22 -0.93 16 7 C -0.11 -2.17 10.02 22.20 0.22 -1.95 16 8 C -0.08 -2.07 9.59 22.53 0.22 -1.85 16 9 C -0.05 -1.55 5.39 -20.08 -0.11 -1.66 16 10 C -0.01 -0.46 4.47 -20.10 -0.09 -0.55 16 11 C -0.25 -10.44 8.14 22.71 0.18 -10.26 16 12 C 0.11 4.87 7.28 22.29 0.16 5.03 16 13 F -0.16 -7.00 17.26 44.97 0.78 -6.23 16 14 C -0.28 -13.56 9.76 22.80 0.22 -13.34 16 15 C 0.10 5.28 5.56 -21.32 -0.12 5.16 16 16 C -0.49 -24.40 9.05 23.47 0.21 -24.19 16 17 H 0.08 3.84 7.91 -2.91 -0.02 3.81 16 18 C 0.04 2.02 5.13 85.25 0.44 2.45 16 19 N -0.81 -38.48 11.00 21.82 0.24 -38.24 16 20 Si 0.98 34.87 29.59 68.60 2.03 36.90 16 21 H -0.26 -9.18 7.11 99.48 0.71 -8.48 16 22 H -0.26 -8.72 7.11 99.48 0.71 -8.01 16 23 H -0.27 -9.32 7.11 99.48 0.71 -8.61 16 24 C -0.16 -7.55 8.23 22.95 0.19 -7.36 16 25 H 0.08 2.40 7.79 -2.39 -0.02 2.38 16 26 H 0.06 2.31 6.69 -2.39 -0.02 2.30 16 27 H 0.06 1.86 7.07 -2.39 -0.02 1.84 16 28 H 0.16 2.06 8.06 -2.91 -0.02 2.03 16 29 H 0.17 1.97 8.06 -2.91 -0.02 1.94 16 30 H 0.13 3.51 8.06 -2.91 -0.02 3.49 16 31 H 0.12 4.49 7.45 -2.91 -0.02 4.47 16 32 H 0.10 4.83 8.06 -2.91 -0.02 4.80 16 33 H 0.29 12.47 8.30 -92.71 -0.77 11.70 16 34 H 0.12 5.66 6.21 -2.91 -0.02 5.64 16 Total: -1.00 -55.93 307.38 7.86 -48.07 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 1.14 Total: 19.31 kcal Atomic # 6 Polarization: -49.26 SS G_CDS: 3.32 Total: -45.95 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: 0.59 Total: -52.10 kcal Atomic # 9 Polarization: -7.00 SS G_CDS: 0.78 Total: -6.23 kcal Atomic # 14 Polarization: 34.87 SS G_CDS: 2.03 Total: 36.90 kcal Total: -55.93 7.86 -48.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244820335.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.401 kcal (2) G-P(sol) polarization free energy of solvation -55.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds