Wall clock time and date at job start Tue Mar 31 2020 05:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36257 * 120.06114 * 2 1 4 4 C 1.39938 * 120.12161 * 180.02562 * 3 2 1 5 5 C 1.47947 * 119.88403 * 180.02562 * 4 3 2 6 6 C 1.39649 * 120.08239 * 309.99326 * 5 4 3 7 7 C 1.38071 * 120.19691 * 179.97438 * 6 5 4 8 8 C 1.38093 * 120.37905 * 359.97438 * 7 6 5 9 9 C 1.39742 * 120.17266 * 0.05035 * 8 7 6 10 10 C 1.43196 * 120.10083 * 179.97438 * 9 8 7 11 11 N 8.16244 * 141.74297 * 31.14824 * 2 1 3 12 12 C 1.39650 * 120.09031 * 129.72273 * 5 4 3 13 13 F 1.35102 * 120.18464 * 359.97438 * 12 5 4 14 14 C 1.39986 * 120.23310 * 0.02562 * 4 3 2 15 15 C 1.36218 * 120.11874 * 359.73917 * 14 4 3 16 16 C 1.40921 * 120.06062 * 180.02562 * 2 1 3 17 17 C 1.41009 * 120.11569 * 359.95855 * 16 2 1 18 18 H 1.07995 * 120.00264 * 26.81454 * 17 16 2 19 19 C 1.40002 * 120.00048 * 206.81279 * 17 16 2 20 20 N 1.30812 * 120.00007 * 16.42166 * 19 17 16 21 21 Si 1.86805 * 120.00326 * 196.41883 * 19 17 16 22 22 H 1.48500 * 109.46980 * 265.18870 * 21 19 17 23 23 H 1.48493 * 109.46790 * 25.18820 * 21 19 17 24 24 H 1.48500 * 109.47166 * 145.19119 * 21 19 17 25 25 H 1.09006 * 109.46673 * 269.97967 * 1 2 3 26 26 H 1.08992 * 109.47156 * 29.97808 * 1 2 3 27 27 H 1.08996 * 109.47212 * 149.98212 * 1 2 3 28 28 H 1.07997 * 119.94048 * 0.02562 * 3 2 1 29 29 H 1.07992 * 119.90565 * 359.96033 * 6 5 4 30 30 H 1.07997 * 119.80878 * 180.02562 * 7 6 5 31 31 H 1.08001 * 119.91160 * 180.02562 * 8 7 6 32 32 H 1.08002 * 119.93788 * 180.02562 * 14 4 3 33 33 H 1.08002 * 120.06414 * 180.25641 * 15 14 4 34 34 H 0.96993 * 119.99872 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1896 1.1793 0.0000 4 6 3.5889 1.1808 -0.0005 5 6 4.3247 2.4643 0.0000 6 6 3.9987 3.4584 -0.9249 7 6 4.6835 4.6574 -0.9262 8 6 5.6951 4.8848 -0.0141 9 6 6.0346 3.9006 0.9181 10 6 7.0842 4.1378 1.8628 11 7 7.9165 4.3255 2.6143 12 6 5.3432 2.6871 0.9291 13 9 5.6605 1.7326 1.8311 14 6 4.2951 -0.0279 -0.0016 15 6 3.6225 -1.2125 0.0032 16 6 2.2129 -1.2197 -0.0005 17 6 1.5116 -2.4430 -0.0002 18 1 0.5187 -2.4964 -0.4215 19 6 2.1026 -3.5885 0.5462 20 7 3.1424 -3.4766 1.3320 21 14 1.4063 -5.2768 0.1533 22 1 0.4588 -5.6825 1.2224 23 1 0.6927 -5.2273 -1.1479 24 1 2.5139 -6.2628 0.0734 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8901 -0.5135 27 1 -0.3633 -0.8898 -0.5141 28 1 1.6496 2.1146 0.0004 29 1 3.2088 3.2890 -1.6416 30 1 4.4259 5.4220 -1.6440 31 1 6.2255 5.8255 -0.0215 32 1 5.3751 -0.0212 -0.0016 33 1 4.1682 -2.1445 0.0065 34 1 3.5516 -4.2702 1.7109 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245069589.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:02 Heat of formation + Delta-G solvation = 14.991329 kcal Electronic energy + Delta-G solvation = -20206.216308 eV Core-core repulsion = 16982.640602 eV Total energy + Delta-G solvation = -3223.575706 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.57535 -39.12192 -37.78934 -36.32285 -34.04697 -32.37000 -31.15702 -30.51199 -28.92066 -26.31276 -25.10679 -23.74670 -22.45723 -20.93528 -19.71466 -18.40185 -17.35586 -17.07334 -16.17540 -15.62000 -15.31107 -14.95959 -14.38744 -13.95135 -13.88102 -13.58675 -13.24159 -13.18092 -12.87795 -12.67996 -12.61183 -12.02523 -11.96820 -11.90762 -11.63366 -11.40377 -11.25905 -11.20500 -10.83198 -10.70184 -10.47149 -9.71815 -9.52374 -9.40922 -8.82417 -8.54249 -7.52661 -7.30744 -6.93482 -4.49353 0.76886 1.24197 2.55430 2.66778 2.93783 2.96896 2.98709 3.02581 3.15121 3.79023 3.84650 3.88368 4.32346 4.47613 4.94475 5.06836 5.29575 5.34212 5.48365 5.82412 6.04345 6.08533 6.16991 6.20636 6.28325 6.33603 6.49804 6.60284 6.63524 6.80202 6.90158 6.99587 7.10790 7.23112 7.48772 7.51841 7.73022 7.87680 7.93102 8.12857 8.45556 8.69441 8.79843 9.98499 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.025771 B = 0.004371 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.243711 B = 6403.653543 C = 7192.622695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.202 4.202 3 C -0.055 4.055 4 C -0.215 4.215 5 C -0.013 4.013 6 C -0.074 4.074 7 C -0.128 4.128 8 C -0.074 4.074 9 C -0.067 4.067 10 C 0.262 3.738 11 N -0.422 5.422 12 C 0.134 3.866 13 F -0.122 7.122 14 C -0.069 4.069 15 C -0.167 4.167 16 C 0.126 3.874 17 C -0.446 4.446 18 H 0.086 0.914 19 C 0.074 3.926 20 N -0.779 5.779 21 Si 0.909 3.091 22 H -0.269 1.269 23 H -0.258 1.258 24 H -0.274 1.274 25 H 0.045 0.955 26 H 0.037 0.963 27 H 0.058 0.942 28 H 0.092 0.908 29 H 0.137 0.863 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.088 0.912 33 H 0.118 0.882 34 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.385 8.955 -5.112 10.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.203 4.203 3 C -0.073 4.073 4 C -0.216 4.216 5 C -0.014 4.014 6 C -0.093 4.093 7 C -0.146 4.146 8 C -0.095 4.095 9 C -0.071 4.071 10 C -0.053 4.053 11 N -0.098 5.098 12 C 0.111 3.889 13 F -0.100 7.100 14 C -0.088 4.088 15 C -0.187 4.187 16 C 0.123 3.877 17 C -0.474 4.474 18 H 0.104 0.896 19 C -0.146 4.146 20 N -0.402 5.402 21 Si 0.733 3.267 22 H -0.194 1.194 23 H -0.182 1.182 24 H -0.199 1.199 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.077 0.923 28 H 0.110 0.890 29 H 0.155 0.845 30 H 0.151 0.849 31 H 0.151 0.849 32 H 0.106 0.894 33 H 0.136 0.864 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.082 9.044 -3.742 9.847 hybrid contribution -0.368 -1.085 -0.054 1.147 sum 0.714 7.958 -3.796 8.846 Atomic orbital electron populations 1.20396 0.93312 1.00180 1.00127 1.19412 0.94510 0.92967 1.13412 1.20109 0.92085 0.96174 0.98959 1.17760 0.92539 0.89445 1.21901 1.19024 0.93605 0.95810 0.92911 1.21486 0.98929 0.92038 0.96808 1.20993 0.96450 0.97772 0.99368 1.20880 0.97497 0.97443 0.93661 1.15933 0.96726 0.95973 0.98460 1.25531 0.92996 0.93703 0.93053 1.81226 1.10887 1.07893 1.09753 1.17915 0.96507 0.84977 0.89459 1.91547 1.91471 1.62296 1.64683 1.20410 0.97183 0.92274 0.98890 1.20936 0.94476 0.96516 1.06739 1.17575 0.91841 0.91753 0.86501 1.19715 1.02441 0.92645 1.32639 0.89648 1.26020 0.94126 1.01722 0.92759 1.69816 1.17827 1.32352 1.20250 0.86274 0.79571 0.80632 0.80237 1.19379 1.18207 1.19868 0.93584 0.94362 0.92339 0.89008 0.84531 0.84876 0.84885 0.89385 0.86407 0.90446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.58 9.61 36.01 0.35 -1.24 16 2 C -0.20 -4.49 5.90 -104.32 -0.62 -5.10 16 3 C -0.05 -1.12 9.06 -39.66 -0.36 -1.48 16 4 C -0.22 -4.41 5.34 -104.63 -0.56 -4.97 16 5 C -0.01 -0.21 5.47 -104.87 -0.57 -0.78 16 6 C -0.07 -0.96 9.49 -39.12 -0.37 -1.33 16 7 C -0.13 -1.31 10.01 -39.70 -0.40 -1.71 16 8 C -0.07 -0.81 9.75 -39.07 -0.38 -1.19 16 9 C -0.07 -0.94 5.73 -106.87 -0.61 -1.56 16 10 C 0.26 4.04 14.97 -22.45 -0.34 3.71 16 11 N -0.42 -7.15 18.54 41.87 0.78 -6.37 16 12 C 0.13 2.26 7.14 -38.52 -0.27 1.98 16 13 F -0.12 -2.39 15.45 2.25 0.03 -2.35 16 14 C -0.07 -1.55 8.79 -39.65 -0.35 -1.90 16 15 C -0.17 -4.12 8.61 -39.28 -0.34 -4.46 16 16 C 0.13 3.11 5.56 -106.80 -0.59 2.52 16 17 C -0.45 -10.88 8.43 -37.87 -0.32 -11.20 16 18 H 0.09 1.97 6.26 -52.49 -0.33 1.64 16 19 C 0.07 1.73 5.15 -17.32 -0.09 1.64 16 20 N -0.78 -19.14 11.00 55.55 0.61 -18.53 16 21 Si 0.91 17.45 29.59 -169.99 -5.03 12.42 16 22 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 23 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 24 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.04 0.62 8.08 -51.93 -0.42 0.20 16 27 H 0.06 1.10 6.25 -51.93 -0.32 0.78 16 28 H 0.09 1.63 8.03 -52.49 -0.42 1.21 16 29 H 0.14 1.61 8.03 -52.49 -0.42 1.19 16 30 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 31 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 32 H 0.09 1.88 7.79 -52.49 -0.41 1.47 16 33 H 0.12 3.01 6.25 -52.49 -0.33 2.68 16 34 H 0.28 6.36 8.29 -40.82 -0.34 6.02 16 LS Contribution 308.16 15.07 4.64 4.64 Total: -1.00 -26.63 308.16 -7.84 -34.47 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -3.06 Total: 2.79 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: -5.82 Total: -27.07 kcal Atomic # 7 Polarization: -26.29 SS G_CDS: 1.39 Total: -24.90 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.03 Total: -2.35 kcal Atomic # 14 Polarization: 17.45 SS G_CDS: -5.03 Total: 12.42 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -26.63 -7.84 -34.47 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245069589.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.461 kcal (2) G-P(sol) polarization free energy of solvation -26.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds