Wall clock time and date at job start Tue Mar 31 2020 05:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29724 * 126.30829 * 2 1 4 4 O 1.41331 * 109.77354 * 180.02562 * 3 2 1 5 5 C 1.34840 * 109.37731 * 0.02562 * 4 3 2 6 6 C 1.39105 * 133.24126 * 179.97438 * 5 4 3 7 7 C 1.36497 * 120.23240 * 179.74521 * 6 5 4 8 8 C 1.39915 * 120.62036 * 0.56141 * 7 6 5 9 9 C 1.48273 * 119.95629 * 179.71169 * 8 7 6 10 10 C 1.40063 * 119.98974 * 184.74291 * 9 8 7 11 11 N 1.32160 * 120.29502 * 180.02562 * 10 9 8 12 12 C 1.31890 * 120.28773 * 359.72905 * 11 10 9 13 13 C 1.40817 * 119.96798 * 0.50665 * 12 11 10 14 14 C 1.41320 * 120.14512 * 179.77119 * 13 12 11 15 15 H 1.08003 * 119.99985 * 204.95793 * 14 13 12 16 16 C 1.40047 * 119.99820 * 24.95704 * 14 13 12 17 17 N 1.30737 * 120.00126 * 17.51277 * 16 14 13 18 18 Si 1.86807 * 119.99873 * 197.50616 * 16 14 13 19 19 H 1.48503 * 109.47118 * 265.18495 * 18 16 14 20 20 H 1.48496 * 109.47104 * 25.18418 * 18 16 14 21 21 H 1.48496 * 109.46976 * 145.18848 * 18 16 14 22 22 N 1.32528 * 119.98682 * 4.72616 * 9 8 7 23 23 C 1.38861 * 120.08698 * 359.43317 * 8 7 6 24 24 C 1.39493 * 119.43335 * 0.28356 * 23 8 7 25 25 H 1.09001 * 109.46914 * 269.97605 * 1 2 3 26 26 H 1.09008 * 109.46660 * 29.97138 * 1 2 3 27 27 H 1.08992 * 109.47622 * 149.96747 * 1 2 3 28 28 H 1.08003 * 119.88520 * 0.04732 * 6 5 4 29 29 H 1.08003 * 119.69185 * 180.28939 * 7 6 5 30 30 H 1.07999 * 119.84868 * 0.02626 * 10 9 8 31 31 H 1.07995 * 120.01993 * 180.25086 * 12 11 10 32 32 H 0.96992 * 119.99764 * 180.02562 * 17 16 14 33 33 H 1.07999 * 120.28534 * 180.25510 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2751 1.0454 0.0000 4 8 3.6300 0.6431 -0.0006 5 6 3.6968 -0.7036 -0.0015 6 6 4.7562 -1.6051 -0.0029 7 6 4.5153 -2.9487 0.0016 8 6 3.2044 -3.4377 -0.0042 9 6 2.9596 -4.9000 -0.0056 10 6 1.6522 -5.3910 -0.1117 11 7 1.4271 -6.6933 -0.1131 12 6 2.4322 -7.5421 -0.0200 13 6 3.7509 -7.0612 0.0923 14 6 4.8303 -7.9674 0.1971 15 1 5.7500 -7.6591 0.6719 16 6 4.7072 -9.2652 -0.3146 17 7 3.7619 -9.5420 -1.1743 18 14 5.8937 -10.6008 0.2312 19 1 7.0101 -10.6995 -0.7431 20 1 6.4353 -10.2640 1.5722 21 1 5.1789 -11.9007 0.2982 22 7 3.9782 -5.7422 0.0931 23 6 2.1322 -2.5552 -0.0027 24 6 2.3750 -1.1816 -0.0015 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8903 -0.5134 27 1 -0.3634 -0.8896 -0.5143 28 1 5.7729 -1.2408 -0.0025 29 1 5.3443 -3.6408 0.0053 30 1 0.8243 -4.7022 -0.1927 31 1 2.2436 -8.6055 -0.0256 32 1 3.6765 -10.4409 -1.5284 33 1 1.1190 -2.9291 -0.0030 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245279312.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:01 Heat of formation + Delta-G solvation = 91.319264 kcal Electronic energy + Delta-G solvation = -20114.842498 eV Core-core repulsion = 16914.496581 eV Total energy + Delta-G solvation = -3200.345916 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.65782 -39.34657 -37.46072 -34.66297 -34.28722 -32.78560 -31.44699 -30.34282 -29.01367 -28.41541 -26.24433 -23.76587 -23.32730 -21.78587 -21.24912 -20.36901 -18.01824 -17.11094 -16.87100 -16.14318 -15.98135 -15.38343 -15.10876 -14.86978 -14.20959 -13.75579 -13.61018 -13.39463 -13.35418 -13.25551 -12.78731 -12.32625 -12.07446 -11.77513 -11.53984 -11.36756 -11.30909 -11.06790 -10.88704 -10.80445 -10.52855 -10.00143 -9.93475 -9.53340 -8.86067 -8.64946 -7.60415 -7.43942 -7.16329 -4.83700 0.73647 1.07347 2.08681 2.40214 2.55410 2.72407 2.93038 2.96753 3.02698 3.69880 3.84529 4.00639 4.23039 4.37759 4.59679 4.90996 5.18721 5.20864 5.24241 5.35209 5.41561 5.50475 5.54729 5.78263 5.81705 5.93336 6.13948 6.16540 6.20914 6.42370 6.65266 6.73723 6.81967 6.93380 7.11402 7.28231 7.46925 8.01674 8.29626 8.36204 8.99859 9.47149 9.82466 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.034361 B = 0.003777 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.673347 B = 7410.668435 C = 8134.591544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.136 3.864 3 N -0.302 5.302 4 O -0.098 6.098 5 C 0.080 3.920 6 C -0.133 4.133 7 C -0.025 4.025 8 C -0.041 4.041 9 C 0.131 3.869 10 C -0.088 4.088 11 N -0.442 5.442 12 C 0.016 3.984 13 C 0.229 3.771 14 C -0.421 4.421 15 H 0.093 0.907 16 C 0.075 3.925 17 N -0.781 5.781 18 Si 0.925 3.075 19 H -0.267 1.267 20 H -0.256 1.256 21 H -0.271 1.271 22 N -0.521 5.521 23 C -0.030 4.030 24 C -0.201 4.201 25 H 0.094 0.906 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.137 0.863 29 H 0.153 0.847 30 H 0.131 0.869 31 H 0.161 0.839 32 H 0.290 0.710 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.650 8.890 1.545 9.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.045 4.045 3 N -0.047 5.047 4 O -0.108 6.108 5 C 0.026 3.974 6 C -0.152 4.152 7 C -0.044 4.044 8 C -0.043 4.043 9 C -0.012 4.012 10 C -0.245 4.245 11 N -0.154 5.154 12 C -0.155 4.155 13 C 0.100 3.900 14 C -0.455 4.455 15 H 0.111 0.889 16 C -0.146 4.146 17 N -0.406 5.406 18 Si 0.748 3.252 19 H -0.192 1.192 20 H -0.180 1.180 21 H -0.196 1.196 22 N -0.240 5.240 23 C -0.051 4.051 24 C -0.205 4.205 25 H 0.112 0.888 26 H 0.104 0.896 27 H 0.111 0.889 28 H 0.155 0.845 29 H 0.171 0.829 30 H 0.148 0.852 31 H 0.178 0.822 32 H 0.102 0.898 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.606 10.095 1.395 10.519 hybrid contribution 0.443 -1.397 0.009 1.466 sum -2.163 8.698 1.404 9.072 Atomic orbital electron populations 1.20458 0.84677 1.04818 1.04476 1.24557 0.97942 0.89775 0.92195 1.79756 0.85451 1.18522 1.21013 1.89089 1.22191 1.17738 1.81796 1.20363 0.95364 0.84452 0.97256 1.19735 0.97037 0.90935 1.07535 1.21164 0.97837 0.93722 0.91715 1.18560 0.92524 0.91666 1.01540 1.20178 0.91645 0.91511 0.97835 1.22604 0.94905 0.92807 1.14141 1.67904 1.36152 1.02851 1.08454 1.23877 0.89035 0.99781 1.02821 1.19302 0.93772 0.88293 0.88611 1.19377 1.00221 0.93972 1.31919 0.88942 1.26055 0.96329 0.99882 0.92383 1.69717 1.28891 1.22898 1.19116 0.86011 0.79935 0.78711 0.80551 1.19152 1.17977 1.19618 1.68858 1.31839 1.03459 1.19857 1.20748 0.99776 0.89358 0.95261 1.20525 0.91024 0.94734 1.14179 0.88802 0.89626 0.88942 0.84488 0.82896 0.85190 0.82236 0.89844 0.84360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.72 10.48 36.00 0.38 -0.34 16 2 C 0.14 1.78 7.46 -80.11 -0.60 1.18 16 3 N -0.30 -4.59 12.81 34.91 0.45 -4.14 16 4 O -0.10 -1.61 12.06 7.64 0.09 -1.51 16 5 C 0.08 1.25 7.48 -38.39 -0.29 0.97 16 6 C -0.13 -1.95 10.00 -39.89 -0.40 -2.35 16 7 C -0.02 -0.41 9.50 -39.58 -0.38 -0.78 16 8 C -0.04 -0.74 5.87 -104.91 -0.62 -1.36 16 9 C 0.13 2.88 6.73 -82.76 -0.56 2.33 16 10 C -0.09 -1.94 10.61 -16.73 -0.18 -2.11 16 11 N -0.44 -10.79 10.47 -12.05 -0.13 -10.92 16 12 C 0.02 0.41 9.88 -16.55 -0.16 0.24 16 13 C 0.23 5.91 6.41 -84.84 -0.54 5.37 16 14 C -0.42 -10.44 9.29 -37.73 -0.35 -10.80 16 15 H 0.09 2.22 7.91 -52.48 -0.41 1.81 16 16 C 0.08 1.71 5.14 -17.34 -0.09 1.62 16 17 N -0.78 -18.41 10.96 55.55 0.61 -17.80 16 18 Si 0.92 16.88 29.59 -169.99 -5.03 11.85 16 19 H -0.27 -4.83 7.11 56.52 0.40 -4.43 16 20 H -0.26 -4.66 7.11 56.52 0.40 -4.26 16 21 H -0.27 -4.81 7.11 56.52 0.40 -4.41 16 22 N -0.52 -12.79 9.54 -7.50 -0.07 -12.86 16 23 C -0.03 -0.47 9.47 -38.88 -0.37 -0.84 16 24 C -0.20 -3.01 6.32 -105.18 -0.66 -3.67 16 25 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 27 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.14 1.64 8.06 -52.48 -0.42 1.22 16 29 H 0.15 2.58 7.53 -52.48 -0.40 2.18 16 30 H 0.13 2.37 6.21 -52.49 -0.33 2.04 16 31 H 0.16 4.06 6.17 -52.49 -0.32 3.74 16 32 H 0.29 6.11 8.29 -40.82 -0.34 5.77 16 33 H 0.14 1.82 6.21 -52.49 -0.33 1.49 16 LS Contribution 296.19 15.07 4.46 4.46 Total: -1.00 -28.66 296.19 -7.04 -35.70 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -2.61 Total: 5.77 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -4.81 Total: -10.54 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: 0.86 Total: -45.72 kcal Atomic # 8 Polarization: -1.61 SS G_CDS: 0.09 Total: -1.51 kcal Atomic # 14 Polarization: 16.88 SS G_CDS: -5.03 Total: 11.85 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.66 -7.04 -35.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245279312.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.017 kcal (2) G-P(sol) polarization free energy of solvation -28.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds