Wall clock time and date at job start Tue Mar 31 2020 05:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29718 * 126.30925 * 2 1 4 4 O 1.41331 * 109.79129 * 180.02562 * 3 2 1 5 5 C 1.34824 * 109.38458 * 359.75602 * 4 3 2 6 6 C 1.39218 * 133.20319 * 179.59263 * 5 4 3 7 7 C 1.36409 * 120.25781 * 180.38382 * 6 5 4 8 8 C 1.40152 * 120.60672 * 0.25950 * 7 6 5 9 9 C 1.47888 * 119.98182 * 180.02562 * 8 7 6 10 10 C 1.40463 * 120.78752 * 179.71845 * 9 8 7 11 11 N 1.31574 * 119.08846 * 179.75861 * 10 9 8 12 12 C 1.33658 * 120.83120 * 0.52165 * 11 10 9 13 13 C 1.41052 * 119.13344 * 179.70380 * 12 11 10 14 14 H 1.08003 * 119.99935 * 180.02562 * 13 12 11 15 15 C 1.40122 * 119.99858 * 0.02562 * 13 12 11 16 16 N 1.30673 * 119.99887 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00203 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46798 * 60.00524 * 17 15 13 19 19 H 1.48496 * 109.47153 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47266 * 300.00818 * 17 15 13 21 21 N 1.33658 * 121.73949 * 359.72991 * 12 11 10 22 22 C 1.31579 * 120.83199 * 359.97438 * 21 12 11 23 23 C 1.39183 * 120.03367 * 359.97438 * 8 7 6 24 24 C 1.39418 * 119.40921 * 0.02562 * 23 8 7 25 25 H 1.09004 * 109.46753 * 269.97371 * 1 2 3 26 26 H 1.08998 * 109.47239 * 29.97335 * 1 2 3 27 27 H 1.09000 * 109.46636 * 149.97624 * 1 2 3 28 28 H 1.08002 * 119.87408 * 0.66771 * 6 5 4 29 29 H 1.08005 * 119.69310 * 180.27687 * 7 6 5 30 30 H 1.07994 * 120.45987 * 0.02562 * 10 9 8 31 31 H 0.97001 * 119.99802 * 179.97438 * 16 15 13 32 32 H 1.07998 * 120.45443 * 179.97438 * 22 21 12 33 33 H 1.07993 * 120.29482 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2751 1.0453 0.0000 4 8 3.6301 0.6435 -0.0006 5 6 3.6975 -0.7031 0.0044 6 6 4.7587 -1.6042 -0.0010 7 6 4.5199 -2.9472 -0.0012 8 6 3.2074 -3.4387 -0.0015 9 6 2.9645 -4.8975 -0.0011 10 6 1.6561 -5.4084 0.0046 11 7 1.4785 -6.7121 -0.0001 12 6 2.5232 -7.5458 0.0002 13 6 2.2915 -8.9371 0.0014 14 1 3.1254 -9.6235 0.0022 15 6 0.9794 -9.4288 0.0017 16 7 -0.0295 -8.5984 0.0003 17 14 0.6724 -11.2714 0.0026 18 1 1.2815 -11.8741 1.2155 19 1 -0.7900 -11.5296 0.0021 20 1 1.2817 -11.8754 -1.2096 21 7 3.7818 -7.0959 0.0000 22 6 4.0365 -5.8050 -0.0011 23 6 2.1325 -2.5545 -0.0009 24 6 2.3753 -1.1816 -0.0007 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3632 -0.8898 -0.5142 28 1 5.7749 -1.2386 -0.0004 29 1 5.3500 -3.6382 -0.0009 30 1 0.8075 -4.7405 0.0084 31 1 -0.9379 -8.9388 0.0001 32 1 5.0558 -5.4481 -0.0009 33 1 1.1194 -2.9285 -0.0007 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245280082.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:02 Heat of formation + Delta-G solvation = 84.491393 kcal Electronic energy + Delta-G solvation = -20074.880651 eV Core-core repulsion = 16874.238656 eV Total energy + Delta-G solvation = -3200.641995 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.090 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.69516 -40.90303 -38.68300 -35.78360 -35.64420 -33.90318 -33.23722 -31.54864 -30.41105 -29.61148 -27.69990 -25.33718 -24.50133 -23.37096 -22.48959 -21.38152 -19.89881 -18.36715 -18.32145 -17.59550 -17.22807 -17.04351 -16.26166 -15.90043 -15.30001 -15.02547 -14.86232 -14.45156 -14.34773 -14.31007 -13.97500 -13.62547 -13.44629 -13.37922 -13.09181 -12.87788 -12.71485 -12.40818 -11.99649 -11.98016 -11.76735 -11.38992 -11.19096 -11.07330 -10.49286 -9.93791 -9.30274 -8.92976 -8.50145 -6.72633 -0.34311 -0.12343 0.94281 1.05987 1.11544 1.41257 1.51366 1.54905 1.54980 2.18154 2.56711 2.88504 3.09891 3.24567 3.60788 3.85950 3.91394 3.94561 4.00385 4.25146 4.26612 4.36917 4.43902 4.55063 4.63475 4.64282 4.87517 5.00103 5.02465 5.09906 5.18850 5.24595 5.26147 5.61095 5.72038 5.79460 6.08668 6.23511 6.45470 6.54044 7.13834 8.15580 8.28747 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.033265 B = 0.003700 C = 0.003335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.511043 B = 7566.621651 C = 8392.986102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.141 3.859 3 N -0.326 5.326 4 O -0.121 6.121 5 C 0.037 3.963 6 C -0.110 4.110 7 C -0.071 4.071 8 C -0.012 4.012 9 C -0.312 4.312 10 C 0.163 3.837 11 N -0.539 5.539 12 C 0.352 3.648 13 C -0.416 4.416 14 H 0.094 0.906 15 C 0.022 3.978 16 N -0.732 5.732 17 Si 1.000 3.000 18 H -0.258 1.258 19 H -0.261 1.261 20 H -0.258 1.258 21 N -0.619 5.619 22 C 0.175 3.825 23 C -0.065 4.065 24 C -0.195 4.195 25 H 0.112 0.888 26 H 0.099 0.901 27 H 0.106 0.894 28 H 0.162 0.838 29 H 0.159 0.841 30 H 0.157 0.843 31 H 0.289 0.711 32 H 0.171 0.829 33 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.362 9.249 0.060 9.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.039 4.039 3 N -0.074 5.074 4 O -0.130 6.130 5 C -0.016 4.016 6 C -0.129 4.129 7 C -0.090 4.090 8 C -0.014 4.014 9 C -0.321 4.321 10 C -0.012 4.012 11 N -0.256 5.256 12 C 0.118 3.882 13 C -0.450 4.450 14 H 0.112 0.888 15 C -0.203 4.203 16 N -0.353 5.353 17 Si 0.818 3.182 18 H -0.182 1.182 19 H -0.185 1.185 20 H -0.182 1.182 21 N -0.338 5.338 22 C 0.002 3.998 23 C -0.085 4.085 24 C -0.199 4.199 25 H 0.130 0.870 26 H 0.118 0.882 27 H 0.124 0.876 28 H 0.179 0.821 29 H 0.176 0.824 30 H 0.174 0.826 31 H 0.100 0.900 32 H 0.188 0.812 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.635 9.466 0.054 9.487 hybrid contribution 0.094 -0.317 0.003 0.331 sum -0.541 9.149 0.057 9.165 Atomic orbital electron populations 1.20709 0.81570 1.06198 1.05994 1.25249 0.99677 0.88725 0.90295 1.79709 0.85333 1.19555 1.22763 1.89019 1.22950 1.18304 1.82729 1.20663 0.96269 0.84422 1.00214 1.19899 0.97772 0.90380 1.04870 1.21149 0.96854 0.94483 0.96542 1.18495 0.93266 0.90917 0.98742 1.19823 0.95811 0.92875 1.23606 1.23555 0.95536 0.92753 0.89373 1.69319 1.33825 1.02746 1.19687 1.20325 0.83141 0.95355 0.89369 1.19801 0.94481 0.89949 1.40749 0.88816 1.27108 0.94643 1.06007 0.92531 1.70157 1.00498 1.38757 1.25838 0.84992 0.78619 0.74256 0.80299 1.18163 1.18469 1.18177 1.68678 1.23851 1.16734 1.24517 1.23332 0.99196 0.88376 0.88946 1.20785 1.00084 0.89252 0.98351 1.20778 0.91349 0.95123 1.12636 0.87013 0.88206 0.87565 0.82063 0.82361 0.82642 0.90014 0.81221 0.83802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.34 10.48 71.24 0.75 -0.60 16 2 C 0.14 3.60 7.47 45.06 0.34 3.94 16 3 N -0.33 -9.86 12.81 -43.44 -0.56 -10.41 16 4 O -0.12 -3.94 12.06 29.89 0.36 -3.57 16 5 C 0.04 1.12 7.49 23.09 0.17 1.30 16 6 C -0.11 -2.80 10.00 22.08 0.22 -2.58 16 7 C -0.07 -1.90 9.38 22.31 0.21 -1.69 16 8 C -0.01 -0.39 5.88 -20.03 -0.12 -0.51 16 9 C -0.31 -12.32 5.94 -19.64 -0.12 -12.44 16 10 C 0.16 7.17 10.69 85.27 0.91 8.08 16 11 N -0.54 -28.42 7.83 -193.17 -1.51 -29.93 16 12 C 0.35 19.21 7.35 134.89 0.99 20.21 16 13 C -0.42 -22.07 9.35 23.42 0.22 -21.85 16 14 H 0.09 4.77 7.85 -2.91 -0.02 4.75 16 15 C 0.02 1.07 5.50 85.32 0.47 1.54 16 16 N -0.73 -36.43 11.40 21.85 0.25 -36.18 16 17 Si 1.00 35.28 29.56 68.60 2.03 37.31 16 18 H -0.26 -8.86 7.11 99.48 0.71 -8.15 16 19 H -0.26 -8.53 7.11 99.48 0.71 -7.82 16 20 H -0.26 -8.86 7.11 99.48 0.71 -8.16 16 21 N -0.62 -31.21 10.34 -193.17 -2.00 -33.20 16 22 C 0.17 7.26 10.70 85.27 0.91 8.17 16 23 C -0.06 -1.89 9.51 22.78 0.22 -1.68 16 24 C -0.20 -5.67 6.32 -20.22 -0.13 -5.80 16 25 H 0.11 1.36 8.14 -2.38 -0.02 1.34 16 26 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 29 H 0.16 3.48 6.25 -2.91 -0.02 3.46 16 30 H 0.16 5.75 6.32 -2.91 -0.02 5.73 16 31 H 0.29 12.73 8.29 -92.71 -0.77 11.96 16 32 H 0.17 5.48 6.31 -2.91 -0.02 5.46 16 33 H 0.14 3.75 6.28 -2.91 -0.02 3.73 16 Total: -1.00 -66.73 295.13 4.79 -61.94 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 1.17 Total: 17.96 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: 5.04 Total: -3.91 kcal Atomic # 7 Polarization: -105.91 SS G_CDS: -3.82 Total: -109.73 kcal Atomic # 8 Polarization: -3.94 SS G_CDS: 0.36 Total: -3.57 kcal Atomic # 14 Polarization: 35.28 SS G_CDS: 2.03 Total: 37.31 kcal Total: -66.73 4.79 -61.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245280082.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.431 kcal (2) G-P(sol) polarization free energy of solvation -66.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds