Wall clock time and date at job start Tue Mar 31 2020 05:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38530 * 119.77751 * 2 1 4 4 C 1.37909 * 120.41959 * 179.97438 * 3 2 1 5 5 C 1.39587 * 119.95965 * 359.72471 * 4 3 2 6 6 C 1.43202 * 120.21828 * 180.27177 * 5 4 3 7 7 N 4.80198 * 137.19797 * 359.70522 * 3 1 2 8 8 C 1.40676 * 119.55948 * 0.56992 * 5 4 3 9 9 C 1.48163 * 120.20561 * 179.70520 * 8 5 4 10 10 C 1.39700 * 120.02815 * 244.99905 * 9 8 5 11 11 C 1.38420 * 120.41056 * 180.25226 * 10 9 8 12 12 C 1.37685 * 120.46847 * 359.44485 * 11 10 9 13 13 C 1.40741 * 120.04572 * 0.30172 * 12 11 10 14 14 C 1.41318 * 120.20712 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99969 * 204.64674 * 14 13 12 16 16 C 1.39930 * 120.00034 * 24.64278 * 14 13 12 17 17 N 1.30850 * 119.99890 * 17.80591 * 16 14 13 18 18 Si 1.86803 * 119.99956 * 197.80892 * 16 14 13 19 19 H 1.48503 * 109.46860 * 90.00006 * 18 16 14 20 20 H 1.48500 * 109.46896 * 209.99941 * 18 16 14 21 21 H 1.48499 * 109.46886 * 329.99991 * 18 16 14 22 22 C 1.39178 * 120.02648 * 64.72187 * 9 8 5 23 23 F 1.35102 * 120.23450 * 0.02562 * 22 9 8 24 24 C 1.38020 * 119.78255 * 180.02562 * 2 1 3 25 25 H 1.09004 * 109.47212 * 269.97770 * 1 2 3 26 26 H 1.08994 * 109.47389 * 29.98116 * 1 2 3 27 27 H 1.09001 * 109.46951 * 149.98166 * 1 2 3 28 28 H 1.08001 * 119.79640 * 0.02562 * 3 2 1 29 29 H 1.08004 * 120.02232 * 180.02562 * 4 3 2 30 30 H 1.07994 * 119.79434 * 359.97438 * 10 9 8 31 31 H 1.08004 * 119.76778 * 179.72269 * 11 10 9 32 32 H 1.08001 * 119.97823 * 180.27772 * 12 11 10 33 33 H 0.97005 * 119.99749 * 179.97438 * 17 16 14 34 34 H 1.08010 * 119.98505 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1949 1.2024 0.0000 4 6 3.5739 1.2178 0.0005 5 6 4.2845 0.0164 0.0069 6 6 5.7165 0.0260 0.0133 7 7 6.8524 0.0336 0.0168 8 6 3.5846 -1.2039 0.0005 9 6 4.3245 -2.4876 0.0006 10 6 4.2357 -3.3457 -1.0982 11 6 4.9194 -4.5492 -1.1044 12 6 5.7048 -4.9115 -0.0332 13 6 5.8124 -4.0594 1.0818 14 6 6.6180 -4.4276 2.1829 15 1 6.4129 -4.0207 3.1621 16 6 7.6815 -5.3194 2.0046 17 7 8.1539 -5.5427 0.8050 18 14 8.4266 -6.1911 3.4792 19 1 7.7146 -7.4741 3.7076 20 1 9.8636 -6.4617 3.2201 21 1 8.2940 -5.3304 4.6821 22 6 5.1131 -2.8369 1.0929 23 9 5.2072 -2.0091 2.1564 24 6 2.1925 -1.1979 -0.0005 25 1 -0.3634 -0.0004 1.0277 26 1 -0.3634 0.8901 -0.5135 27 1 -0.3633 -0.8898 -0.5141 28 1 1.6480 2.1337 0.0004 29 1 4.1038 2.1590 0.0009 30 1 3.6263 -3.0703 -1.9462 31 1 4.8398 -5.2068 -1.9575 32 1 6.2384 -5.8504 -0.0483 33 1 8.8913 -6.1607 0.6815 34 1 1.6486 -2.1311 -0.0014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245604839.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:47 Heat of formation + Delta-G solvation = 12.981795 kcal Electronic energy + Delta-G solvation = -20617.645436 eV Core-core repulsion = 17393.982590 eV Total energy + Delta-G solvation = -3223.662846 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -47.32438 -39.46770 -37.23843 -35.95441 -34.08021 -32.77006 -31.64576 -29.72236 -28.20663 -27.42052 -25.41206 -23.01017 -22.29415 -20.84834 -20.34572 -18.49880 -17.23788 -16.10178 -15.65685 -15.26158 -15.17882 -14.59787 -14.33022 -14.02189 -13.87587 -13.80662 -13.14322 -12.99608 -12.91433 -12.61196 -12.54318 -11.97916 -11.95767 -11.76053 -11.61382 -11.46246 -11.25014 -11.15969 -10.96331 -10.72180 -10.50131 -9.93883 -9.68714 -9.33693 -8.74404 -8.47299 -7.60386 -7.38837 -6.90022 -4.49561 1.00545 1.44973 2.55864 2.60069 3.02196 3.07136 3.09068 3.25714 3.32091 3.85582 4.18938 4.36046 4.42484 4.86305 4.91649 4.99587 5.33154 5.37764 5.47279 5.55825 5.67910 5.75182 5.78300 6.02902 6.10411 6.17730 6.34447 6.46224 6.57482 6.64218 6.75879 6.97009 6.99783 7.07840 7.35526 7.46698 7.79123 7.86693 7.97047 8.06230 8.42390 8.64217 8.71878 10.03907 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.024009 B = 0.005069 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.954278 B = 5522.875298 C = 5805.063379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.064 4.064 3 C -0.134 4.134 4 C -0.071 4.071 5 C -0.024 4.024 6 C 0.255 3.745 7 N -0.410 5.410 8 C 0.039 3.961 9 C -0.084 4.084 10 C -0.197 4.197 11 C -0.111 4.111 12 C -0.140 4.140 13 C 0.085 3.915 14 C -0.451 4.451 15 H 0.083 0.917 16 C 0.076 3.924 17 N -0.786 5.786 18 Si 0.914 3.086 19 H -0.265 1.265 20 H -0.276 1.276 21 H -0.260 1.260 22 C -0.002 4.002 23 F -0.156 7.156 24 C -0.111 4.111 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.127 0.873 33 H 0.284 0.716 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.970 6.683 -2.225 13.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.064 4.064 3 C -0.152 4.152 4 C -0.091 4.091 5 C -0.027 4.027 6 C -0.060 4.060 7 N -0.085 5.085 8 C 0.036 3.964 9 C -0.085 4.085 10 C -0.217 4.217 11 C -0.130 4.130 12 C -0.159 4.159 13 C 0.082 3.918 14 C -0.480 4.480 15 H 0.101 0.899 16 C -0.143 4.143 17 N -0.411 5.411 18 Si 0.738 3.262 19 H -0.190 1.190 20 H -0.201 1.201 21 H -0.184 1.184 22 C -0.023 4.023 23 F -0.135 7.135 24 C -0.129 4.129 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.145 0.855 29 H 0.147 0.853 30 H 0.119 0.881 31 H 0.117 0.883 32 H 0.145 0.855 33 H 0.095 0.905 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.990 6.603 -2.300 12.193 hybrid contribution 0.134 -0.337 0.748 0.831 sum -9.856 6.266 -1.552 11.782 Atomic orbital electron populations 1.20830 0.90972 1.02869 1.02525 1.20012 0.96179 0.92943 0.97316 1.20840 0.93380 0.97637 1.03383 1.21020 0.94150 0.96261 0.97676 1.16149 0.84741 0.94028 1.07774 1.25468 0.92617 0.93863 0.94076 1.81159 1.12006 1.07152 1.08191 1.18943 0.92825 0.91510 0.93127 1.18244 1.00609 0.93812 0.95885 1.20185 1.07362 0.96518 0.97618 1.20649 0.98167 0.96100 0.98059 1.21275 1.00349 1.00312 0.93980 1.17554 0.91227 0.88738 0.94278 1.19527 1.10257 1.22207 0.96001 0.89852 1.25924 0.95911 0.95140 0.97298 1.69815 1.20333 1.27595 1.23317 0.86206 0.78221 0.80139 0.81670 1.18993 1.20090 1.18396 1.17812 1.07496 0.91161 0.85803 1.91293 1.95606 1.71304 1.55345 1.21081 0.92442 0.98006 1.01362 0.90909 0.91465 0.91263 0.85479 0.85292 0.88124 0.88346 0.85532 0.90487 0.84957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 10.00 36.00 0.36 -0.61 16 2 C -0.06 -0.76 5.88 -104.60 -0.62 -1.37 16 3 C -0.13 -1.52 9.67 -39.59 -0.38 -1.90 16 4 C -0.07 -0.94 9.75 -39.20 -0.38 -1.33 16 5 C -0.02 -0.42 5.62 -106.55 -0.60 -1.02 16 6 C 0.26 5.30 13.29 -22.47 -0.30 5.00 16 7 N -0.41 -9.43 18.54 41.84 0.78 -8.65 16 8 C 0.04 0.71 5.03 -104.54 -0.53 0.19 16 9 C -0.08 -1.87 4.69 -104.93 -0.49 -2.36 16 10 C -0.20 -4.17 9.74 -38.97 -0.38 -4.55 16 11 C -0.11 -2.47 10.00 -39.72 -0.40 -2.86 16 12 C -0.14 -3.52 8.69 -38.84 -0.34 -3.85 16 13 C 0.09 2.29 5.57 -106.80 -0.60 1.70 16 14 C -0.45 -12.24 8.78 -37.78 -0.33 -12.57 16 15 H 0.08 2.25 7.74 -52.48 -0.41 1.84 16 16 C 0.08 1.92 5.14 -17.34 -0.09 1.83 16 17 N -0.79 -20.22 10.96 55.55 0.61 -19.61 16 18 Si 0.91 18.83 29.60 -169.99 -5.03 13.80 16 19 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 20 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 21 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 22 C 0.00 -0.06 6.62 -38.25 -0.25 -0.31 16 23 F -0.16 -4.03 15.52 2.25 0.03 -4.00 16 24 C -0.11 -1.64 9.36 -39.30 -0.37 -2.01 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 27 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 28 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 29 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 30 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 31 H 0.10 1.89 8.06 -52.48 -0.42 1.47 16 32 H 0.13 3.24 6.16 -52.49 -0.32 2.92 16 33 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 34 H 0.13 1.81 8.06 -52.48 -0.42 1.39 16 LS Contribution 310.54 15.07 4.68 4.68 Total: -1.00 -29.78 310.54 -7.86 -37.64 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -3.24 Total: 2.17 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: -5.69 Total: -26.03 kcal Atomic # 7 Polarization: -29.65 SS G_CDS: 1.38 Total: -28.27 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.03 Total: -4.00 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.78 -7.86 -37.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245604839.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.621 kcal (2) G-P(sol) polarization free energy of solvation -29.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds