Wall clock time and date at job start Tue Mar 31 2020 05:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38598 * 119.76362 * 2 1 4 4 C 1.37962 * 120.46220 * 180.02562 * 3 2 1 5 5 C 1.39528 * 119.98140 * 359.96991 * 4 3 2 6 6 C 1.43193 * 120.22784 * 179.97438 * 5 4 3 7 7 N 4.80236 * 137.25793 * 0.03590 * 3 1 2 8 8 C 1.40922 * 119.53873 * 0.02562 * 5 4 3 9 9 C 1.47750 * 120.22846 * 179.97438 * 8 5 4 10 10 C 1.40128 * 119.87158 * 309.99469 * 9 8 5 11 11 C 1.36146 * 120.17817 * 179.97438 * 10 9 8 12 12 C 1.40976 * 119.90954 * 0.02872 * 11 10 9 13 13 C 1.40885 * 120.12708 * 179.97438 * 12 11 10 14 14 H 1.07997 * 119.99886 * 208.82952 * 13 12 11 15 15 C 1.40064 * 119.99733 * 28.82887 * 13 12 11 16 16 N 1.30776 * 119.99999 * 197.81675 * 15 13 12 17 17 Si 1.86802 * 120.00131 * 17.82196 * 15 13 12 18 18 H 1.48499 * 109.46949 * 269.99700 * 17 15 13 19 19 H 1.48502 * 109.47094 * 29.99535 * 17 15 13 20 20 H 1.48500 * 109.47063 * 149.99677 * 17 15 13 21 21 C 1.41202 * 119.74858 * 0.27397 * 12 11 10 22 22 F 1.35099 * 120.09469 * 179.70771 * 21 12 11 23 23 C 1.36528 * 119.81853 * 359.39142 * 21 12 11 24 24 C 1.37935 * 119.76120 * 180.23108 * 2 1 3 25 25 H 1.09002 * 109.46915 * 90.00284 * 1 2 3 26 26 H 1.08996 * 109.47279 * 210.00220 * 1 2 3 27 27 H 1.08996 * 109.46899 * 330.00252 * 1 2 3 28 28 H 1.07992 * 119.77142 * 359.97438 * 3 2 1 29 29 H 1.07996 * 120.00742 * 179.97438 * 4 3 2 30 30 H 1.08000 * 119.91445 * 0.02562 * 10 9 8 31 31 H 1.08003 * 120.04386 * 180.02562 * 11 10 9 32 32 H 0.97000 * 119.99822 * 355.44493 * 16 15 13 33 33 H 1.08001 * 119.95957 * 180.29815 * 23 21 12 34 34 H 1.08003 * 120.00229 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1951 1.2031 0.0000 4 6 3.5746 1.2200 -0.0005 5 6 4.2866 0.0200 -0.0004 6 6 5.7184 0.0313 -0.0015 7 7 6.8545 0.0401 -0.0020 8 6 3.5866 -1.2031 -0.0004 9 6 4.3251 -2.4828 -0.0008 10 6 5.3501 -2.6968 -0.9322 11 6 6.0350 -3.8734 -0.9378 12 6 5.7118 -4.8794 -0.0046 13 6 6.4172 -6.0989 -0.0067 14 1 5.9330 -7.0034 0.3305 15 6 7.7465 -6.1382 -0.4462 16 7 8.2911 -7.2790 -0.7811 17 14 8.7417 -4.5610 -0.5539 18 1 8.5745 -3.9613 -1.9022 19 1 8.2649 -3.6035 0.4762 20 1 10.1767 -4.8642 -0.3215 21 6 4.6741 -4.6626 0.9281 22 9 4.3546 -5.6242 1.8217 23 6 3.9988 -3.4760 0.9288 24 6 2.1918 -1.1974 -0.0048 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6476 2.1340 -0.0004 29 1 4.1033 2.1617 -0.0009 30 1 5.5979 -1.9259 -1.6469 31 1 6.8248 -4.0358 -1.6563 32 1 7.7972 -8.1054 -0.6628 33 1 3.2079 -3.3060 1.6444 34 1 1.6479 -2.1305 -0.0090 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245604933.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:48 Heat of formation + Delta-G solvation = 7.527605 kcal Electronic energy + Delta-G solvation = -20383.759299 eV Core-core repulsion = 17159.859942 eV Total energy + Delta-G solvation = -3223.899357 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -47.53607 -39.62514 -37.61490 -36.13484 -34.28280 -32.85332 -31.85099 -29.73712 -29.34834 -27.46445 -25.25949 -22.73830 -22.17793 -21.47925 -20.32191 -18.55504 -18.44600 -16.44864 -15.72058 -15.14760 -14.91937 -14.75387 -14.40186 -14.27599 -14.13145 -13.92260 -13.34575 -13.21616 -13.16386 -12.80793 -12.69806 -12.58597 -12.17639 -12.02614 -11.70148 -11.46744 -11.31587 -11.12080 -10.93307 -10.74883 -10.37877 -10.01113 -9.70048 -9.27667 -8.84564 -8.59132 -7.93388 -7.80908 -7.45357 -4.79430 0.90843 1.35127 2.32273 2.39587 3.08411 3.09104 3.20153 3.25346 3.45829 3.83151 4.03844 4.24362 4.28172 4.81669 4.89585 4.92378 5.07406 5.32310 5.38569 5.50739 5.59730 5.66755 5.70614 5.75771 5.90315 6.03230 6.15630 6.29391 6.36647 6.51371 6.60520 6.67534 6.89044 7.04950 7.17652 7.24477 7.40527 7.43920 7.62378 7.88541 8.07143 8.20481 8.40325 9.69550 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.021700 B = 0.005523 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.014021 B = 5068.456010 C = 6038.054913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.056 4.056 3 C -0.147 4.147 4 C -0.063 4.063 5 C -0.050 4.050 6 C 0.263 3.737 7 N -0.425 5.425 8 C 0.066 3.934 9 C -0.208 4.208 10 C -0.044 4.044 11 C -0.233 4.233 12 C 0.079 3.921 13 C -0.481 4.481 14 H 0.086 0.914 15 C 0.043 3.957 16 N -0.790 5.790 17 Si 1.069 2.931 18 H -0.272 1.272 19 H -0.258 1.258 20 H -0.284 1.284 21 C -0.021 4.021 22 F -0.158 7.158 23 C -0.076 4.076 24 C -0.127 4.127 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.125 0.875 29 H 0.127 0.873 30 H 0.099 0.901 31 H 0.115 0.885 32 H 0.292 0.708 33 H 0.110 0.890 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.661 12.652 0.134 17.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.057 4.057 3 C -0.165 4.165 4 C -0.084 4.084 5 C -0.054 4.054 6 C -0.052 4.052 7 N -0.101 5.101 8 C 0.064 3.936 9 C -0.209 4.209 10 C -0.063 4.063 11 C -0.252 4.252 12 C 0.075 3.925 13 C -0.508 4.508 14 H 0.104 0.896 15 C -0.179 4.179 16 N -0.410 5.410 17 Si 0.894 3.106 18 H -0.198 1.198 19 H -0.182 1.182 20 H -0.211 1.211 21 C -0.040 4.040 22 F -0.137 7.137 23 C -0.095 4.095 24 C -0.145 4.145 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.143 0.857 29 H 0.145 0.855 30 H 0.117 0.883 31 H 0.133 0.867 32 H 0.103 0.897 33 H 0.128 0.872 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.410 13.069 -0.291 15.544 hybrid contribution -2.002 -1.090 0.550 2.345 sum -10.412 11.979 0.259 15.873 Atomic orbital electron populations 1.20848 0.91159 1.02880 1.02481 1.20016 0.96073 0.93022 0.96579 1.20808 0.93398 0.97545 1.04747 1.20986 0.94099 0.96208 0.97081 1.16188 0.84492 0.94162 1.10517 1.25542 0.92651 0.93271 0.93750 1.81196 1.12061 1.07799 1.09036 1.18828 0.92344 0.91103 0.91348 1.17655 1.04502 0.94131 1.04618 1.20390 0.93548 0.96057 0.96306 1.20618 1.05702 0.96060 1.02778 1.17822 0.91461 0.93585 0.89662 1.20774 0.98332 0.95436 1.36259 0.89604 1.27480 0.96380 1.04449 0.89610 1.70512 1.42528 1.00387 1.27578 0.83626 0.74992 0.72787 0.79202 1.19825 1.18240 1.21071 1.17296 1.04790 0.87593 0.94368 1.91314 1.92502 1.63256 1.66647 1.20284 0.98688 0.92085 0.98460 1.21160 0.92730 0.97823 1.02817 0.90933 0.91295 0.91487 0.85702 0.85538 0.88328 0.86707 0.89652 0.87169 0.85191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 10.00 36.01 0.36 -0.55 16 2 C -0.06 -0.61 5.88 -104.60 -0.61 -1.22 16 3 C -0.15 -1.49 9.67 -39.55 -0.38 -1.87 16 4 C -0.06 -0.73 9.75 -39.20 -0.38 -1.12 16 5 C -0.05 -0.76 5.74 -106.48 -0.61 -1.37 16 6 C 0.26 4.62 12.64 -22.47 -0.28 4.33 16 7 N -0.43 -8.36 18.54 41.84 0.78 -7.59 16 8 C 0.07 1.07 5.49 -104.53 -0.57 0.50 16 9 C -0.21 -4.10 5.12 -104.68 -0.54 -4.64 16 10 C -0.04 -0.95 8.36 -39.62 -0.33 -1.28 16 11 C -0.23 -5.50 7.20 -39.30 -0.28 -5.78 16 12 C 0.08 1.99 5.14 -106.73 -0.55 1.44 16 13 C -0.48 -12.75 9.12 -37.90 -0.35 -13.10 16 14 H 0.09 2.36 7.94 -52.49 -0.42 1.94 16 15 C 0.04 1.12 5.41 -17.32 -0.09 1.02 16 16 N -0.79 -20.50 13.65 55.55 0.76 -19.74 16 17 Si 1.07 24.51 24.90 -169.99 -4.23 20.28 16 18 H -0.27 -5.90 6.43 56.52 0.36 -5.54 16 19 H -0.26 -6.10 7.04 56.52 0.40 -5.70 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 21 C -0.02 -0.49 7.26 -39.07 -0.28 -0.77 16 22 F -0.16 -3.81 16.74 2.25 0.04 -3.77 16 23 C -0.08 -1.57 9.41 -39.58 -0.37 -1.94 16 24 C -0.13 -1.70 9.14 -39.23 -0.36 -2.06 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 27 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 28 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 29 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 30 H 0.10 1.95 7.26 -52.49 -0.38 1.57 16 31 H 0.12 2.69 4.39 -52.48 -0.23 2.46 16 32 H 0.29 7.30 8.73 -40.82 -0.36 6.94 16 33 H 0.11 1.98 8.04 -52.49 -0.42 1.56 16 34 H 0.13 1.64 8.04 -52.48 -0.42 1.22 16 LS Contribution 304.55 15.07 4.59 4.59 Total: -1.00 -27.73 304.55 -6.89 -34.62 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -3.17 Total: 0.02 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: -5.64 Total: -28.40 kcal Atomic # 7 Polarization: -28.86 SS G_CDS: 1.53 Total: -27.33 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.04 Total: -3.77 kcal Atomic # 14 Polarization: 24.51 SS G_CDS: -4.23 Total: 20.28 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.73 -6.89 -34.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245604933.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.143 kcal (2) G-P(sol) polarization free energy of solvation -27.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds