Wall clock time and date at job start Tue Mar 31 2020 05:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38598 * 119.76362 * 2 1 4 4 C 1.37962 * 120.46220 * 180.02562 * 3 2 1 5 5 C 1.39528 * 119.98140 * 359.96991 * 4 3 2 6 6 C 1.43193 * 120.22784 * 179.97438 * 5 4 3 7 7 N 4.80236 * 137.25793 * 0.03590 * 3 1 2 8 8 C 1.40922 * 119.53873 * 0.02562 * 5 4 3 9 9 C 1.47750 * 120.22846 * 179.97438 * 8 5 4 10 10 C 1.40128 * 119.87158 * 309.99469 * 9 8 5 11 11 C 1.36146 * 120.17817 * 179.97438 * 10 9 8 12 12 C 1.40976 * 119.90954 * 0.02872 * 11 10 9 13 13 C 1.40885 * 120.12708 * 179.97438 * 12 11 10 14 14 H 1.07997 * 119.99886 * 208.82952 * 13 12 11 15 15 C 1.40064 * 119.99733 * 28.82887 * 13 12 11 16 16 N 1.30776 * 119.99999 * 197.81675 * 15 13 12 17 17 Si 1.86802 * 120.00131 * 17.82196 * 15 13 12 18 18 H 1.48499 * 109.46949 * 269.99700 * 17 15 13 19 19 H 1.48502 * 109.47094 * 29.99535 * 17 15 13 20 20 H 1.48500 * 109.47063 * 149.99677 * 17 15 13 21 21 C 1.41202 * 119.74858 * 0.27397 * 12 11 10 22 22 F 1.35099 * 120.09469 * 179.70771 * 21 12 11 23 23 C 1.36528 * 119.81853 * 359.39142 * 21 12 11 24 24 C 1.37935 * 119.76120 * 180.23108 * 2 1 3 25 25 H 1.09002 * 109.46915 * 90.00284 * 1 2 3 26 26 H 1.08996 * 109.47279 * 210.00220 * 1 2 3 27 27 H 1.08996 * 109.46899 * 330.00252 * 1 2 3 28 28 H 1.07992 * 119.77142 * 359.97438 * 3 2 1 29 29 H 1.07996 * 120.00742 * 179.97438 * 4 3 2 30 30 H 1.08000 * 119.91445 * 0.02562 * 10 9 8 31 31 H 1.08003 * 120.04386 * 180.02562 * 11 10 9 32 32 H 0.97000 * 119.99822 * 355.44493 * 16 15 13 33 33 H 1.08001 * 119.95957 * 180.29815 * 23 21 12 34 34 H 1.08003 * 120.00229 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1951 1.2031 0.0000 4 6 3.5746 1.2200 -0.0005 5 6 4.2866 0.0200 -0.0004 6 6 5.7184 0.0313 -0.0015 7 7 6.8545 0.0401 -0.0020 8 6 3.5866 -1.2031 -0.0004 9 6 4.3251 -2.4828 -0.0008 10 6 5.3501 -2.6968 -0.9322 11 6 6.0350 -3.8734 -0.9378 12 6 5.7118 -4.8794 -0.0046 13 6 6.4172 -6.0989 -0.0067 14 1 5.9330 -7.0034 0.3305 15 6 7.7465 -6.1382 -0.4462 16 7 8.2911 -7.2790 -0.7811 17 14 8.7417 -4.5610 -0.5539 18 1 8.5745 -3.9613 -1.9022 19 1 8.2649 -3.6035 0.4762 20 1 10.1767 -4.8642 -0.3215 21 6 4.6741 -4.6626 0.9281 22 9 4.3546 -5.6242 1.8217 23 6 3.9988 -3.4760 0.9288 24 6 2.1918 -1.1974 -0.0048 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6476 2.1340 -0.0004 29 1 4.1033 2.1617 -0.0009 30 1 5.5979 -1.9259 -1.6469 31 1 6.8248 -4.0358 -1.6563 32 1 7.7972 -8.1054 -0.6628 33 1 3.2079 -3.3060 1.6444 34 1 1.6479 -2.1305 -0.0090 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245604933.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:48 Heat of formation + Delta-G solvation = -6.138549 kcal Electronic energy + Delta-G solvation = -20384.351908 eV Core-core repulsion = 17159.859942 eV Total energy + Delta-G solvation = -3224.491966 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.43759 -40.83752 -39.23263 -37.49187 -36.06150 -34.03910 -33.14819 -31.46657 -30.86520 -28.33088 -26.90345 -24.21366 -23.39474 -22.97473 -21.92560 -20.35707 -19.72251 -17.99861 -17.26392 -16.81075 -16.40545 -16.23632 -16.01074 -15.82986 -15.41980 -15.08343 -15.08173 -14.71644 -14.23319 -14.23101 -13.91770 -13.90098 -13.83570 -13.22532 -13.04846 -12.85935 -12.66580 -12.56838 -12.35320 -12.14957 -11.96551 -11.74391 -11.58147 -11.07371 -10.17779 -9.69624 -9.67272 -9.55207 -9.18281 -6.74974 -0.23604 0.22612 0.55395 0.74077 1.23856 1.39605 1.61877 1.73540 1.97921 2.02264 2.36694 2.94686 3.02881 3.17084 3.59422 3.87045 3.97944 4.04107 4.12094 4.22220 4.47333 4.50608 4.59926 4.71131 4.80717 4.89321 4.99853 5.10594 5.18593 5.26728 5.32565 5.33862 5.40885 5.44179 5.59526 5.71109 5.73249 5.78381 6.03169 6.11182 6.35501 6.52522 6.55592 7.76669 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.021700 B = 0.005523 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.014021 B = 5068.456010 C = 6038.054913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.045 4.045 3 C -0.125 4.125 4 C -0.054 4.054 5 C -0.063 4.063 6 C 0.275 3.725 7 N -0.472 5.472 8 C 0.032 3.968 9 C -0.169 4.169 10 C -0.056 4.056 11 C -0.237 4.237 12 C 0.058 3.942 13 C -0.528 4.528 14 H 0.055 0.945 15 C 0.021 3.979 16 N -0.820 5.820 17 Si 1.096 2.904 18 H -0.253 1.253 19 H -0.273 1.273 20 H -0.271 1.271 21 C -0.042 4.042 22 F -0.166 7.166 23 C -0.075 4.075 24 C -0.127 4.127 25 H 0.085 0.915 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.167 0.833 29 H 0.154 0.846 30 H 0.116 0.884 31 H 0.113 0.887 32 H 0.285 0.715 33 H 0.143 0.857 34 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.026 17.474 0.027 23.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.046 4.046 3 C -0.142 4.142 4 C -0.074 4.074 5 C -0.067 4.067 6 C -0.039 4.039 7 N -0.149 5.149 8 C 0.029 3.971 9 C -0.170 4.170 10 C -0.074 4.074 11 C -0.256 4.256 12 C 0.055 3.945 13 C -0.556 4.556 14 H 0.073 0.927 15 C -0.196 4.196 16 N -0.441 5.441 17 Si 0.917 3.083 18 H -0.179 1.179 19 H -0.198 1.198 20 H -0.197 1.197 21 C -0.062 4.062 22 F -0.145 7.145 23 C -0.093 4.093 24 C -0.145 4.145 25 H 0.104 0.896 26 H 0.090 0.910 27 H 0.108 0.892 28 H 0.185 0.815 29 H 0.171 0.829 30 H 0.134 0.866 31 H 0.130 0.870 32 H 0.096 0.904 33 H 0.160 0.840 34 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.787 17.892 -0.407 21.429 hybrid contribution -1.408 -2.135 0.642 2.637 sum -13.196 15.756 0.235 20.553 Atomic orbital electron populations 1.20954 0.88539 1.04274 1.03695 1.20412 0.97897 0.92178 0.94130 1.21342 0.92776 0.98983 1.01119 1.21327 0.94891 0.95787 0.95419 1.16320 0.83108 0.95218 1.12021 1.26080 0.93251 0.92065 0.92462 1.81217 1.13541 1.09166 1.10954 1.18658 0.93467 0.89435 0.95506 1.18151 1.02189 0.95163 1.01540 1.20670 0.93919 0.95637 0.97201 1.20738 1.05983 0.96534 1.02359 1.18002 0.92250 0.93723 0.90568 1.20578 0.99444 0.95175 1.40451 0.92713 1.28172 0.96595 1.05795 0.89014 1.70548 1.42706 1.00421 1.30476 0.83281 0.74809 0.70625 0.79549 1.17890 1.19846 1.19705 1.17677 1.05377 0.88696 0.94481 1.91285 1.92543 1.63844 1.66807 1.20634 0.98895 0.90808 0.98999 1.21255 0.91352 0.99483 1.02412 0.89627 0.91002 0.89193 0.81516 0.82862 0.86604 0.86968 0.90376 0.83959 0.84732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 10.00 71.24 0.71 -0.37 16 2 C -0.05 -0.70 5.88 -19.85 -0.12 -0.82 16 3 C -0.12 -1.64 9.67 22.29 0.22 -1.42 16 4 C -0.05 -0.95 9.75 22.52 0.22 -0.73 16 5 C -0.06 -1.68 5.74 -21.07 -0.12 -1.80 16 6 C 0.28 9.10 12.64 88.33 1.12 10.22 16 7 N -0.47 -18.10 18.54 19.00 0.35 -17.75 16 8 C 0.03 0.92 5.49 -19.80 -0.11 0.82 16 9 C -0.17 -6.39 5.12 -19.90 -0.10 -6.49 16 10 C -0.06 -2.34 8.36 22.24 0.19 -2.16 16 11 C -0.24 -11.44 7.20 22.45 0.16 -11.27 16 12 C 0.06 3.07 5.14 -21.23 -0.11 2.96 16 13 C -0.53 -30.14 9.12 23.36 0.21 -29.93 16 14 H 0.05 3.33 7.94 -2.91 -0.02 3.30 16 15 C 0.02 1.17 5.41 85.29 0.46 1.63 16 16 N -0.82 -45.34 13.65 21.85 0.30 -45.04 16 17 Si 1.10 51.39 24.90 68.60 1.71 53.10 16 18 H -0.25 -10.97 6.43 99.48 0.64 -10.33 16 19 H -0.27 -13.31 7.04 99.48 0.70 -12.61 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 21 C -0.04 -2.07 7.26 22.60 0.16 -1.91 16 22 F -0.17 -8.28 16.74 44.97 0.75 -7.53 16 23 C -0.07 -3.00 9.41 22.27 0.21 -2.79 16 24 C -0.13 -2.82 9.14 22.50 0.21 -2.61 16 25 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.07 0.67 8.08 -2.39 -0.02 0.65 16 27 H 0.09 0.48 8.08 -2.39 -0.02 0.47 16 28 H 0.17 0.97 8.06 -2.91 -0.02 0.95 16 29 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 30 H 0.12 4.43 7.26 -2.91 -0.02 4.41 16 31 H 0.11 5.39 4.39 -2.91 -0.01 5.38 16 32 H 0.29 15.51 8.73 -92.71 -0.81 14.70 16 33 H 0.14 4.75 8.04 -2.91 -0.02 4.73 16 34 H 0.13 2.85 8.04 -2.91 -0.02 2.83 16 Total: -1.00 -65.59 304.55 7.45 -58.14 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: 1.03 Total: 5.75 kcal Atomic # 6 Polarization: -49.98 SS G_CDS: 3.31 Total: -46.67 kcal Atomic # 7 Polarization: -63.44 SS G_CDS: 0.65 Total: -62.79 kcal Atomic # 9 Polarization: -8.28 SS G_CDS: 0.75 Total: -7.53 kcal Atomic # 14 Polarization: 51.39 SS G_CDS: 1.71 Total: 53.10 kcal Total: -65.59 7.45 -58.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245604933.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.006 kcal (2) G-P(sol) polarization free energy of solvation -65.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds