Wall clock time and date at job start Tue Mar 31 2020 05:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38517 * 119.78486 * 2 1 4 4 C 1.37921 * 120.41100 * 180.02562 * 3 2 1 5 5 C 1.39567 * 119.96206 * 0.02562 * 4 3 2 6 6 C 1.43200 * 120.21580 * 179.97438 * 5 4 3 7 7 N 4.80191 * 137.19325 * 0.04507 * 3 1 2 8 8 C 1.40657 * 119.56824 * 0.02562 * 5 4 3 9 9 C 1.48207 * 120.20390 * 180.02562 * 8 5 4 10 10 C 1.39777 * 120.00023 * 130.01796 * 9 8 5 11 11 C 1.38597 * 120.34170 * 179.97438 * 10 9 8 12 12 F 1.35105 * 119.83010 * 179.97438 * 11 10 9 13 13 C 1.37958 * 120.34159 * 359.97438 * 11 10 9 14 14 C 1.40723 * 119.98059 * 359.72476 * 13 11 10 15 15 C 1.41433 * 120.16489 * 180.29705 * 14 13 11 16 16 H 1.07999 * 119.99609 * 204.67338 * 15 14 13 17 17 C 1.39922 * 120.00197 * 24.67553 * 15 14 13 18 18 N 1.30835 * 120.00217 * 17.76705 * 17 15 14 19 19 Si 1.86798 * 120.00098 * 197.76543 * 17 15 14 20 20 H 1.48494 * 109.47219 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46961 * 120.00169 * 19 17 15 22 22 H 1.48494 * 109.47663 * 239.99758 * 19 17 15 23 23 C 1.38843 * 119.99432 * 309.99344 * 9 8 5 24 24 C 1.38042 * 119.77749 * 180.30101 * 2 1 3 25 25 H 1.09000 * 109.47265 * 89.99489 * 1 2 3 26 26 H 1.08994 * 109.47610 * 210.00193 * 1 2 3 27 27 H 1.09008 * 109.46645 * 329.99935 * 1 2 3 28 28 H 1.08000 * 119.79167 * 0.02562 * 3 2 1 29 29 H 1.08001 * 120.01823 * 179.97438 * 4 3 2 30 30 H 1.08001 * 119.83184 * 359.97438 * 10 9 8 31 31 H 1.07994 * 120.00821 * 180.02562 * 13 11 10 32 32 H 0.96994 * 120.00561 * 179.97438 * 18 17 15 33 33 H 1.08005 * 120.17058 * 0.02562 * 23 9 8 34 34 H 1.08004 * 119.98939 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1950 1.2022 0.0000 4 6 3.5742 1.2173 -0.0005 5 6 4.2844 0.0158 -0.0016 6 6 5.7163 0.0251 -0.0027 7 7 6.8523 0.0325 -0.0026 8 6 3.5844 -1.2042 -0.0027 9 6 4.3244 -2.4884 -0.0033 10 6 3.9986 -3.4832 0.9230 11 6 4.6856 -4.6869 0.9284 12 9 4.3624 -5.6411 1.8286 13 6 5.6977 -4.9157 0.0193 14 6 6.0331 -3.9263 -0.9235 15 6 7.0658 -4.1592 -1.8613 16 1 7.5940 -3.3261 -2.3009 17 6 7.4032 -5.4690 -2.2197 18 7 6.5703 -6.4486 -1.9777 19 14 9.0426 -5.8191 -3.0437 20 1 9.7970 -4.5502 -3.2041 21 1 9.8281 -6.7587 -2.2038 22 1 8.8064 -6.4271 -4.3778 23 6 5.3409 -2.7033 -0.9243 24 6 2.1925 -1.1981 -0.0063 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3633 0.8901 0.5139 28 1 1.6481 2.1335 0.0004 29 1 4.1042 2.1582 -0.0009 30 1 3.2074 -3.3130 1.6381 31 1 6.2292 -5.8558 0.0281 32 1 6.8039 -7.3566 -2.2264 33 1 5.5949 -1.9364 -1.6412 34 1 1.6487 -2.1313 -0.0108 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245605397.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:50 Heat of formation + Delta-G solvation = 9.129093 kcal Electronic energy + Delta-G solvation = -20238.091301 eV Core-core repulsion = 17014.261390 eV Total energy + Delta-G solvation = -3223.829911 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 281.091 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -47.72548 -39.62629 -37.31531 -36.05298 -34.08724 -32.77117 -31.61134 -29.73471 -28.26761 -27.45945 -25.54602 -23.09838 -22.40626 -20.81023 -20.40440 -18.59622 -17.36975 -15.96679 -15.62871 -15.06212 -14.92520 -14.81774 -14.52730 -14.37672 -14.22405 -13.89128 -13.25073 -13.15778 -12.96683 -12.66031 -12.62085 -12.17643 -12.00455 -11.74765 -11.63475 -11.49018 -11.27206 -11.09386 -10.92017 -10.78671 -10.49675 -10.09529 -9.79449 -9.32749 -8.82797 -8.55431 -7.63020 -7.37294 -6.92925 -4.58064 0.92342 1.36363 2.54824 2.63032 3.00716 3.03987 3.08299 3.16711 3.26396 3.82905 4.11606 4.26740 4.38979 4.82725 4.86259 4.94224 5.30935 5.35573 5.41058 5.53899 5.62761 5.70977 5.77011 5.99513 6.06901 6.21008 6.29307 6.46033 6.50485 6.59370 6.74783 6.86730 6.96039 7.05058 7.32193 7.51758 7.58347 7.77740 7.95735 8.03871 8.39555 8.65150 8.68372 10.00257 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.018496 B = 0.005126 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.488368 B = 5461.402658 C = 6269.054656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.061 4.061 3 C -0.136 4.136 4 C -0.069 4.069 5 C -0.032 4.032 6 C 0.257 3.743 7 N -0.414 5.414 8 C 0.039 3.961 9 C -0.030 4.030 10 C -0.255 4.255 11 C 0.106 3.894 12 F -0.165 7.165 13 C -0.192 4.192 14 C 0.128 3.872 15 C -0.451 4.451 16 H 0.084 0.916 17 C 0.076 3.924 18 N -0.784 5.784 19 Si 0.911 3.089 20 H -0.258 1.258 21 H -0.270 1.270 22 H -0.272 1.272 23 C -0.200 4.200 24 C -0.114 4.114 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.105 0.895 31 H 0.131 0.869 32 H 0.284 0.716 33 H 0.099 0.901 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.516 9.554 1.756 13.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.061 4.061 3 C -0.154 4.154 4 C -0.089 4.089 5 C -0.035 4.035 6 C -0.058 4.058 7 N -0.089 5.089 8 C 0.037 3.963 9 C -0.030 4.030 10 C -0.275 4.275 11 C 0.087 3.913 12 F -0.144 7.144 13 C -0.212 4.212 14 C 0.125 3.875 15 C -0.479 4.479 16 H 0.102 0.898 17 C -0.144 4.144 18 N -0.408 5.408 19 Si 0.734 3.266 20 H -0.181 1.181 21 H -0.194 1.194 22 H -0.197 1.197 23 C -0.220 4.220 24 C -0.132 4.132 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.145 0.855 29 H 0.147 0.853 30 H 0.123 0.877 31 H 0.149 0.851 32 H 0.095 0.905 33 H 0.117 0.883 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.790 9.272 1.744 12.235 hybrid contribution 0.201 -0.562 -0.275 0.657 sum -7.589 8.710 1.469 11.646 Atomic orbital electron populations 1.20845 0.90976 1.02936 1.02572 1.20036 0.96221 0.92944 0.96947 1.20847 0.93419 0.97645 1.03537 1.21014 0.94130 0.96263 0.97509 1.16101 0.84697 0.93961 1.08740 1.25451 0.92583 0.93609 0.94125 1.81184 1.11960 1.07458 1.08311 1.19048 0.92795 0.91603 0.92898 1.18013 0.96664 0.91106 0.97240 1.20172 1.07033 0.94267 1.06051 1.17514 0.97978 0.85948 0.89825 1.91347 1.92442 1.63822 1.66774 1.21395 1.00245 1.03085 0.96488 1.17264 0.90346 0.89693 0.90188 1.19649 1.14892 0.92817 1.20568 0.89808 1.25976 0.98025 0.95813 0.94567 1.69807 1.33769 1.01682 1.35567 0.86208 0.81583 0.79692 0.79084 1.18148 1.19449 1.19719 1.21076 0.99020 0.99887 1.02006 1.21123 0.92593 0.98085 1.01387 0.90846 0.91218 0.91443 0.85485 0.85281 0.87686 0.85141 0.90452 0.88328 0.84863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 10.00 36.00 0.36 -0.59 16 2 C -0.06 -0.68 5.88 -104.59 -0.62 -1.30 16 3 C -0.14 -1.42 9.67 -39.59 -0.38 -1.81 16 4 C -0.07 -0.83 9.75 -39.20 -0.38 -1.21 16 5 C -0.03 -0.51 5.73 -106.56 -0.61 -1.12 16 6 C 0.26 4.77 12.64 -22.47 -0.28 4.49 16 7 N -0.41 -8.52 18.54 41.84 0.78 -7.75 16 8 C 0.04 0.68 5.49 -104.53 -0.57 0.10 16 9 C -0.03 -0.64 5.10 -105.00 -0.54 -1.17 16 10 C -0.26 -5.59 9.49 -38.87 -0.37 -5.96 16 11 C 0.11 2.58 7.28 -39.55 -0.29 2.29 16 12 F -0.16 -3.84 17.26 2.25 0.04 -3.80 16 13 C -0.19 -5.01 8.66 -38.75 -0.34 -5.35 16 14 C 0.13 3.36 5.57 -106.88 -0.60 2.76 16 15 C -0.45 -11.81 9.05 -37.74 -0.34 -12.15 16 16 H 0.08 2.15 7.91 -52.49 -0.41 1.74 16 17 C 0.08 1.86 5.14 -17.35 -0.09 1.77 16 18 N -0.78 -19.86 10.96 55.55 0.61 -19.25 16 19 Si 0.91 18.49 29.59 -169.99 -5.03 13.46 16 20 H -0.26 -5.26 7.11 56.52 0.40 -4.85 16 21 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 22 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 23 C -0.20 -4.78 8.17 -38.49 -0.31 -5.09 16 24 C -0.11 -1.62 9.14 -39.30 -0.36 -1.98 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 27 H 0.07 0.44 8.08 -51.92 -0.42 0.02 16 28 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 29 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 30 H 0.11 2.04 8.04 -52.49 -0.42 1.62 16 31 H 0.13 3.54 6.16 -52.49 -0.32 3.22 16 32 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 33 H 0.10 2.31 7.26 -52.48 -0.38 1.93 16 34 H 0.13 1.81 8.04 -52.48 -0.42 1.39 16 LS Contribution 310.56 15.07 4.68 4.68 Total: -1.00 -28.26 310.56 -7.85 -36.11 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -3.20 Total: 2.85 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: -5.72 Total: -26.30 kcal Atomic # 7 Polarization: -28.38 SS G_CDS: 1.38 Total: -27.00 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.04 Total: -3.80 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.46 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.26 -7.85 -36.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245605397.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.241 kcal (2) G-P(sol) polarization free energy of solvation -28.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds