Wall clock time and date at job start Tue Mar 31 2020 05:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29862 * 125.54018 * 2 1 4 4 N 1.26256 * 117.78341 * 179.70864 * 3 2 1 5 5 C 1.30763 * 116.24945 * 0.46874 * 4 3 2 6 6 C 1.47313 * 126.18581 * 179.83826 * 5 4 3 7 7 O 1.21613 * 119.99717 * 172.75989 * 6 5 4 8 8 N 1.34780 * 120.00248 * 352.75565 * 6 5 4 9 9 C 1.46925 * 120.62865 * 173.99043 * 8 6 5 10 10 C 1.53189 * 108.89121 * 233.67616 * 9 8 6 11 11 C 1.53042 * 109.31372 * 305.29462 * 10 9 8 12 12 C 1.50703 * 109.45656 * 181.37465 * 11 10 9 13 13 H 1.07999 * 120.00262 * 359.97438 * 12 11 10 14 14 C 1.37874 * 119.99453 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99743 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00461 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47209 * 89.99852 * 16 14 12 18 18 H 1.48500 * 109.47063 * 210.00330 * 16 14 12 19 19 H 1.48497 * 109.46950 * 330.00068 * 16 14 12 20 20 C 1.53040 * 109.53386 * 61.36767 * 11 10 9 21 21 C 1.47204 * 120.81178 * 354.13257 * 8 6 5 22 22 S 1.71272 * 125.54860 * 179.97438 * 2 1 3 23 23 H 1.08999 * 109.47430 * 270.03893 * 1 2 3 24 24 H 1.09000 * 109.47446 * 30.04709 * 1 2 3 25 25 H 1.09000 * 109.46704 * 150.04321 * 1 2 3 26 26 H 1.09007 * 109.58597 * 113.81793 * 9 8 6 27 27 H 1.08998 * 109.58982 * 353.54066 * 9 8 6 28 28 H 1.09000 * 109.49598 * 65.25423 * 10 9 8 29 29 H 1.09009 * 109.49165 * 185.31279 * 10 9 8 30 30 H 1.08993 * 109.45661 * 301.34284 * 11 10 9 31 31 H 0.97004 * 120.00085 * 180.02562 * 15 14 12 32 32 H 1.09000 * 109.49668 * 58.58715 * 20 11 10 33 33 H 1.09007 * 109.49049 * 178.68109 * 20 11 10 34 34 H 1.08991 * 109.53555 * 6.53694 * 21 8 6 35 35 H 1.09005 * 109.67678 * 246.22968 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2619 1.0567 0.0000 4 7 3.5128 0.8863 0.0057 5 6 3.9276 -0.3538 0.0015 6 6 5.3311 -0.8015 0.0032 7 8 5.5925 -1.9822 0.1315 8 7 6.3254 0.0975 -0.1377 9 6 7.7300 -0.3134 -0.0070 10 6 8.4134 0.5801 1.0329 11 6 8.2246 2.0476 0.6418 12 6 8.9245 2.9284 1.6445 13 1 9.4508 2.4861 2.4773 14 6 8.8920 4.2991 1.4990 15 7 9.5024 5.0678 2.3743 16 14 7.9811 5.0643 0.0588 17 1 6.5704 5.3208 0.4453 18 1 8.6329 6.3452 -0.3148 19 1 8.0160 4.1350 -1.0989 20 6 6.7317 2.3840 0.6223 21 6 6.0292 1.5110 -0.4223 22 16 2.5028 -1.3935 0.0006 23 1 -0.3634 0.0007 1.0276 24 1 -0.3634 0.8895 -0.5146 25 1 -0.3633 -0.8904 -0.5132 26 1 8.2330 -0.2062 -0.9680 27 1 7.7780 -1.3532 0.3165 28 1 7.9684 0.4043 2.0123 29 1 9.4776 0.3469 1.0697 30 1 8.6480 2.2168 -0.3482 31 1 9.4792 6.0322 2.2722 32 1 6.3026 2.1913 1.6056 33 1 6.5991 3.4353 0.3665 34 1 4.9530 1.6752 -0.3715 35 1 6.3917 1.7688 -1.4174 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331123666.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:57 Heat of formation + Delta-G solvation = 45.336772 kcal Electronic energy + Delta-G solvation = -19947.066027 eV Core-core repulsion = 16880.170111 eV Total energy + Delta-G solvation = -3066.895916 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.51845 -39.76144 -37.18066 -33.92135 -33.29411 -31.58343 -30.73742 -29.39103 -26.79151 -25.72992 -23.42641 -22.67626 -21.72678 -20.10938 -19.38239 -18.64094 -16.94260 -16.67967 -16.25929 -15.96514 -14.96943 -14.83009 -14.50537 -13.97368 -13.77434 -13.51666 -13.32347 -13.10132 -12.87854 -12.66476 -12.54797 -12.12426 -11.88728 -11.04975 -10.94278 -10.74155 -10.55851 -10.21919 -10.13990 -10.03852 -10.00139 -9.81684 -9.63042 -9.26564 -9.00223 -8.52579 -8.31852 -6.07374 -4.06709 -0.23273 0.45378 0.99581 1.94101 2.92696 3.04212 3.28347 3.37414 3.39769 3.69865 4.14057 4.40696 4.50929 4.75497 4.95090 5.09863 5.23960 5.41541 5.49552 5.62300 5.68835 5.80859 5.90261 6.08253 6.29012 6.45045 6.56108 6.67102 6.74323 6.88422 7.18274 7.44531 7.51477 7.75350 7.94425 8.22497 8.51468 8.96391 9.54959 11.05906 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.023427 B = 0.005270 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.894340 B = 5312.253876 C = 6186.416355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.009 4.009 3 N -0.271 5.271 4 N -0.205 5.205 5 C -0.040 4.040 6 C 0.593 3.407 7 O -0.537 6.537 8 N -0.567 5.567 9 C 0.108 3.892 10 C -0.113 4.113 11 C 0.011 3.989 12 C -0.513 4.513 13 H 0.074 0.926 14 C 0.070 3.930 15 N -0.901 5.901 16 Si 0.884 3.116 17 H -0.276 1.276 18 H -0.297 1.297 19 H -0.265 1.265 20 C -0.128 4.128 21 C 0.061 3.939 22 S 0.220 5.780 23 H 0.095 0.905 24 H 0.097 0.903 25 H 0.087 0.913 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.029 0.971 31 H 0.263 0.737 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.131 0.869 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.342 -12.420 -7.175 22.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.285 4.285 3 N -0.111 5.111 4 N -0.047 5.047 5 C -0.319 4.319 6 C 0.375 3.625 7 O -0.414 6.414 8 N -0.298 5.298 9 C -0.014 4.014 10 C -0.151 4.151 11 C -0.007 4.007 12 C -0.551 4.551 13 H 0.092 0.908 14 C -0.132 4.132 15 N -0.539 5.539 16 Si 0.714 3.286 17 H -0.203 1.203 18 H -0.225 1.225 19 H -0.190 1.190 20 C -0.166 4.166 21 C -0.062 4.062 22 S 0.463 5.537 23 H 0.114 0.886 24 H 0.116 0.884 25 H 0.106 0.894 26 H 0.088 0.912 27 H 0.105 0.895 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.047 0.953 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.147 0.853 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.113 -12.567 -7.054 22.373 hybrid contribution -0.386 0.905 -0.630 1.169 sum -17.499 -11.662 -7.684 22.389 Atomic orbital electron populations 1.20460 0.83443 1.04997 1.04723 1.29509 1.04496 0.92426 1.02114 1.71383 0.97313 1.27170 1.15236 1.71862 1.05026 1.16113 1.11695 1.29877 1.01177 0.92570 1.08235 1.16536 0.81678 0.85665 0.78577 1.90829 1.82917 1.15672 1.52009 1.48068 1.06099 1.09633 1.66014 1.21967 0.78740 1.00078 1.00576 1.21848 0.99741 0.96166 0.97346 1.19187 0.91359 0.92395 0.97804 1.21027 1.32848 0.90617 1.10626 0.90835 1.25025 0.95050 0.97286 0.95823 1.69901 1.43645 1.04607 1.35771 0.86898 0.79578 0.78300 0.83822 1.20305 1.22489 1.18975 1.22285 0.98770 0.97661 0.97865 1.23068 1.05273 0.78519 0.99339 1.84767 0.95986 1.09436 1.63501 0.88641 0.88419 0.89434 0.91198 0.89535 0.92172 0.90896 0.95316 0.92667 0.91723 0.92246 0.85262 0.91863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.48 36.01 0.38 -0.04 16 2 C -0.01 -0.09 7.53 -13.11 -0.10 -0.19 16 3 N -0.27 -3.86 11.59 32.65 0.38 -3.48 16 4 N -0.20 -3.29 8.09 32.94 0.27 -3.02 16 5 C -0.04 -0.60 7.34 -14.32 -0.11 -0.71 16 6 C 0.59 10.18 7.68 -12.57 -0.10 10.08 16 7 O -0.54 -9.85 16.42 5.27 0.09 -9.77 16 8 N -0.57 -10.03 2.98 -173.86 -0.52 -10.55 16 9 C 0.11 1.83 6.40 -3.71 -0.02 1.80 16 10 C -0.11 -2.20 5.30 -26.61 -0.14 -2.34 16 11 C 0.01 0.26 1.66 -91.73 -0.15 0.11 16 12 C -0.51 -14.24 9.14 -34.44 -0.31 -14.56 16 13 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 14 C 0.07 2.00 5.45 -17.82 -0.10 1.90 16 15 N -0.90 -27.59 13.96 55.43 0.77 -26.81 16 16 Si 0.88 21.82 24.38 -169.99 -4.14 17.67 16 17 H -0.28 -6.69 6.85 56.52 0.39 -6.30 16 18 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 19 H -0.26 -6.17 6.53 56.52 0.37 -5.80 16 20 C -0.13 -2.76 4.85 -26.61 -0.13 -2.89 16 21 C 0.06 1.11 6.33 -3.56 -0.02 1.09 16 22 S 0.22 2.35 23.14 -107.50 -2.49 -0.14 16 23 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 26 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 27 H 0.09 1.40 7.04 -51.93 -0.37 1.03 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.07 1.36 8.14 -51.92 -0.42 0.93 16 30 H 0.03 0.67 7.20 -51.93 -0.37 0.29 16 31 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 32 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 33 H 0.06 1.36 3.24 -51.92 -0.17 1.19 16 34 H 0.13 2.32 3.79 -108.71 -0.41 1.91 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 295.92 15.07 4.46 4.46 Total: -1.00 -32.69 295.92 -6.29 -38.98 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -4.30 Total: -1.61 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -0.80 Total: -5.74 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 0.90 Total: -43.86 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.14 Total: 17.67 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -2.49 Total: -0.14 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.69 -6.29 -38.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331123666.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.317 kcal (2) G-P(sol) polarization free energy of solvation -32.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds