Wall clock time and date at job start Tue Mar 31 2020 05:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29862 * 125.54018 * 2 1 4 4 N 1.26256 * 117.78341 * 179.70864 * 3 2 1 5 5 C 1.30763 * 116.24945 * 0.46874 * 4 3 2 6 6 C 1.47313 * 126.18581 * 179.83826 * 5 4 3 7 7 O 1.21613 * 119.99717 * 172.75989 * 6 5 4 8 8 N 1.34780 * 120.00248 * 352.75565 * 6 5 4 9 9 C 1.46925 * 120.62865 * 173.99043 * 8 6 5 10 10 C 1.53189 * 108.89121 * 233.67616 * 9 8 6 11 11 C 1.53042 * 109.31372 * 305.29462 * 10 9 8 12 12 C 1.50703 * 109.45656 * 181.37465 * 11 10 9 13 13 H 1.07999 * 120.00262 * 359.97438 * 12 11 10 14 14 C 1.37874 * 119.99453 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99743 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 120.00461 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47209 * 89.99852 * 16 14 12 18 18 H 1.48500 * 109.47063 * 210.00330 * 16 14 12 19 19 H 1.48497 * 109.46950 * 330.00068 * 16 14 12 20 20 C 1.53040 * 109.53386 * 61.36767 * 11 10 9 21 21 C 1.47204 * 120.81178 * 354.13257 * 8 6 5 22 22 S 1.71272 * 125.54860 * 179.97438 * 2 1 3 23 23 H 1.08999 * 109.47430 * 270.03893 * 1 2 3 24 24 H 1.09000 * 109.47446 * 30.04709 * 1 2 3 25 25 H 1.09000 * 109.46704 * 150.04321 * 1 2 3 26 26 H 1.09007 * 109.58597 * 113.81793 * 9 8 6 27 27 H 1.08998 * 109.58982 * 353.54066 * 9 8 6 28 28 H 1.09000 * 109.49598 * 65.25423 * 10 9 8 29 29 H 1.09009 * 109.49165 * 185.31279 * 10 9 8 30 30 H 1.08993 * 109.45661 * 301.34284 * 11 10 9 31 31 H 0.97004 * 120.00085 * 180.02562 * 15 14 12 32 32 H 1.09000 * 109.49668 * 58.58715 * 20 11 10 33 33 H 1.09007 * 109.49049 * 178.68109 * 20 11 10 34 34 H 1.08991 * 109.53555 * 6.53694 * 21 8 6 35 35 H 1.09005 * 109.67678 * 246.22968 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2619 1.0567 0.0000 4 7 3.5128 0.8863 0.0057 5 6 3.9276 -0.3538 0.0015 6 6 5.3311 -0.8015 0.0032 7 8 5.5925 -1.9822 0.1315 8 7 6.3254 0.0975 -0.1377 9 6 7.7300 -0.3134 -0.0070 10 6 8.4134 0.5801 1.0329 11 6 8.2246 2.0476 0.6418 12 6 8.9245 2.9284 1.6445 13 1 9.4508 2.4861 2.4773 14 6 8.8920 4.2991 1.4990 15 7 9.5024 5.0678 2.3743 16 14 7.9811 5.0643 0.0588 17 1 6.5704 5.3208 0.4453 18 1 8.6329 6.3452 -0.3148 19 1 8.0160 4.1350 -1.0989 20 6 6.7317 2.3840 0.6223 21 6 6.0292 1.5110 -0.4223 22 16 2.5028 -1.3935 0.0006 23 1 -0.3634 0.0007 1.0276 24 1 -0.3634 0.8895 -0.5146 25 1 -0.3633 -0.8904 -0.5132 26 1 8.2330 -0.2062 -0.9680 27 1 7.7780 -1.3532 0.3165 28 1 7.9684 0.4043 2.0123 29 1 9.4776 0.3469 1.0697 30 1 8.6480 2.2168 -0.3482 31 1 9.4792 6.0322 2.2722 32 1 6.3026 2.1913 1.6056 33 1 6.5991 3.4353 0.3665 34 1 4.9530 1.6752 -0.3715 35 1 6.3917 1.7688 -1.4174 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331123666.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:57 Heat of formation + Delta-G solvation = 22.025977 kcal Electronic energy + Delta-G solvation = -19948.076859 eV Core-core repulsion = 16880.170111 eV Total energy + Delta-G solvation = -3067.906748 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.54896 -41.08406 -38.71459 -35.48919 -34.44814 -33.38168 -32.18729 -30.42811 -28.38515 -26.82140 -24.89383 -24.26276 -23.07039 -21.49265 -20.41002 -20.03894 -18.85689 -18.08096 -17.44122 -17.19623 -16.59229 -16.21360 -15.68348 -15.36234 -15.08816 -14.83369 -14.59904 -14.32995 -14.19947 -13.92345 -13.72374 -13.48323 -13.38330 -12.86638 -12.36561 -12.14757 -12.06112 -11.98829 -11.59966 -11.40561 -11.26963 -11.05550 -11.00963 -10.88216 -10.78539 -10.53311 -9.77748 -8.29979 -6.33846 -1.19018 -0.45405 0.09537 0.90310 1.32286 1.35557 1.46007 1.71965 1.82254 2.32504 2.66284 3.05883 3.22207 3.57086 3.89797 4.04866 4.12803 4.18216 4.22293 4.40657 4.59930 4.62040 4.66815 4.73313 4.90358 4.99819 5.03655 5.05423 5.10599 5.30885 5.50472 5.65665 5.71830 6.10263 6.30146 6.65500 6.73042 7.23216 7.31670 8.86966 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.023427 B = 0.005270 C = 0.004525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.894340 B = 5312.253876 C = 6186.416355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.008 3.992 3 N -0.307 5.307 4 N -0.225 5.225 5 C -0.085 4.085 6 C 0.597 3.403 7 O -0.554 6.554 8 N -0.576 5.576 9 C 0.115 3.885 10 C -0.107 4.107 11 C 0.011 3.989 12 C -0.519 4.519 13 H 0.032 0.968 14 C 0.012 3.988 15 N -0.951 5.951 16 Si 0.944 3.056 17 H -0.269 1.269 18 H -0.299 1.299 19 H -0.238 1.238 20 C -0.123 4.123 21 C 0.070 3.930 22 S 0.285 5.715 23 H 0.115 0.885 24 H 0.105 0.895 25 H 0.118 0.882 26 H 0.091 0.909 27 H 0.096 0.904 28 H 0.043 0.957 29 H 0.077 0.923 30 H 0.035 0.965 31 H 0.265 0.735 32 H 0.046 0.954 33 H 0.049 0.951 34 H 0.140 0.860 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.302 -13.887 -9.278 26.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.268 4.268 3 N -0.148 5.148 4 N -0.068 5.068 5 C -0.363 4.363 6 C 0.380 3.620 7 O -0.432 6.432 8 N -0.307 5.307 9 C -0.007 4.007 10 C -0.145 4.145 11 C -0.008 4.008 12 C -0.557 4.557 13 H 0.050 0.950 14 C -0.185 4.185 15 N -0.592 5.592 16 Si 0.771 3.229 17 H -0.195 1.195 18 H -0.227 1.227 19 H -0.161 1.161 20 C -0.161 4.161 21 C -0.052 4.052 22 S 0.529 5.471 23 H 0.133 0.867 24 H 0.123 0.877 25 H 0.137 0.863 26 H 0.109 0.891 27 H 0.114 0.886 28 H 0.062 0.938 29 H 0.096 0.904 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.156 0.844 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.087 -14.076 -9.164 26.184 hybrid contribution 0.423 1.251 0.146 1.328 sum -19.664 -12.825 -9.018 25.149 Atomic orbital electron populations 1.20830 0.79867 1.06892 1.06438 1.30343 1.06355 0.91632 0.98421 1.71367 0.96966 1.28723 1.17724 1.71699 1.06328 1.17042 1.11777 1.29579 1.01588 0.93945 1.11188 1.16710 0.82447 0.85274 0.77525 1.90805 1.83522 1.16216 1.52677 1.48085 1.06525 1.09471 1.66615 1.21898 0.78626 0.99621 1.00516 1.21726 1.00449 0.94760 0.97555 1.19157 0.91800 0.93446 0.96377 1.21370 1.32380 0.91507 1.10399 0.94970 1.25894 0.96013 0.97876 0.98743 1.70057 1.45890 1.04982 1.38267 0.85903 0.78289 0.77571 0.81129 1.19507 1.22667 1.16090 1.22121 0.97835 0.97854 0.98331 1.22951 1.05575 0.78229 0.98488 1.84514 0.93047 1.07745 1.61778 0.86683 0.87673 0.86331 0.89105 0.88594 0.93826 0.90432 0.94682 0.92618 0.93486 0.93285 0.84381 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.48 71.24 0.75 0.21 16 2 C 0.01 0.14 7.53 88.40 0.67 0.80 16 3 N -0.31 -8.15 11.59 -50.60 -0.59 -8.74 16 4 N -0.22 -6.92 8.09 -49.70 -0.40 -7.33 16 5 C -0.08 -2.44 7.34 87.24 0.64 -1.80 16 6 C 0.60 19.68 7.68 86.63 0.67 20.34 16 7 O -0.55 -19.51 16.42 -4.07 -0.07 -19.57 16 8 N -0.58 -19.57 2.98 -822.21 -2.45 -22.03 16 9 C 0.11 3.71 6.40 86.36 0.55 4.27 16 10 C -0.11 -4.16 5.30 30.67 0.16 -3.99 16 11 C 0.01 0.51 1.66 -11.51 -0.02 0.49 16 12 C -0.52 -29.73 9.14 25.60 0.23 -29.50 16 13 H 0.03 2.04 7.99 -2.91 -0.02 2.02 16 14 C 0.01 0.68 5.45 84.65 0.46 1.14 16 15 N -0.95 -60.36 13.96 21.45 0.30 -60.06 16 16 Si 0.94 45.06 24.38 68.60 1.67 46.73 16 17 H -0.27 -12.43 6.85 99.48 0.68 -11.75 16 18 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 19 H -0.24 -10.20 6.53 99.48 0.65 -9.55 16 20 C -0.12 -5.27 4.85 30.67 0.15 -5.12 16 21 C 0.07 2.47 6.33 86.31 0.55 3.02 16 22 S 0.29 5.26 23.14 -56.49 -1.31 3.96 16 23 H 0.12 0.45 8.14 -2.39 -0.02 0.43 16 24 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.12 0.12 8.14 -2.39 -0.02 0.10 16 26 H 0.09 2.58 8.14 -2.38 -0.02 2.56 16 27 H 0.10 2.95 7.04 -2.39 -0.02 2.93 16 28 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.08 2.90 8.14 -2.38 -0.02 2.88 16 30 H 0.04 1.57 7.20 -2.39 -0.02 1.56 16 31 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 32 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.05 2.19 3.24 -2.38 -0.01 2.18 16 34 H 0.14 4.78 3.79 -75.71 -0.29 4.50 16 35 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 Total: -1.00 -73.56 295.92 2.72 -70.84 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: 0.76 Total: 6.34 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: 4.81 Total: -10.15 kcal Atomic # 7 Polarization: -95.01 SS G_CDS: -3.14 Total: -98.15 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.07 Total: -19.57 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.67 Total: 46.73 kcal Atomic # 16 Polarization: 5.26 SS G_CDS: -1.31 Total: 3.96 kcal Total: -73.56 2.72 -70.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331123666.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.868 kcal (2) G-P(sol) polarization free energy of solvation -73.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds