Wall clock time and date at job start Tue Mar 31 2020 05:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 119.99785 * 2 1 4 4 H 1.48501 * 109.47138 * 269.99967 * 3 2 1 5 5 H 1.48496 * 109.47336 * 30.00168 * 3 2 1 6 6 H 1.48505 * 109.47171 * 150.00514 * 3 2 1 7 7 C 1.38815 * 120.00207 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00225 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99523 * 359.97438 * 7 2 1 10 10 C 1.46508 * 119.99420 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46638 * 187.81563 * 10 9 7 12 12 H 1.08993 * 110.00398 * 314.65017 * 11 10 9 13 13 C 1.54333 * 109.99021 * 193.61354 * 11 10 9 14 14 C 1.55156 * 103.02334 * 218.66948 * 13 11 10 15 15 C 1.54902 * 101.58067 * 35.30739 * 14 13 11 16 16 N 1.47029 * 109.88281 * 75.75176 * 11 10 9 17 17 C 1.34772 * 125.64503 * 298.39136 * 16 11 10 18 18 O 1.21618 * 120.00044 * 3.36228 * 17 16 11 19 19 C 1.47257 * 119.99883 * 183.08319 * 17 16 11 20 20 N 1.30563 * 125.54322 * 172.62584 * 19 17 16 21 21 C 1.30704 * 115.90563 * 179.97438 * 20 19 17 22 22 C 1.34233 * 115.78511 * 0.02562 * 21 20 19 23 23 S 1.71072 * 109.08867 * 359.72395 * 22 21 20 24 24 H 0.96993 * 120.00228 * 359.97438 * 1 2 3 25 25 H 0.96993 * 120.00622 * 0.02562 * 9 7 2 26 26 H 1.08994 * 109.46638 * 67.81954 * 10 9 7 27 27 H 1.08991 * 109.47157 * 307.81654 * 10 9 7 28 28 H 1.09003 * 110.84852 * 100.20103 * 13 11 10 29 29 H 1.09002 * 110.66863 * 337.05120 * 13 11 10 30 30 H 1.09000 * 111.00465 * 277.23420 * 14 13 11 31 31 H 1.09001 * 111.00685 * 153.38176 * 14 13 11 32 32 H 1.09001 * 110.36775 * 204.14842 * 15 14 13 33 33 H 1.09001 * 110.36880 * 81.83010 * 15 14 13 34 34 H 1.07999 * 122.10415 * 179.97438 * 21 20 19 35 35 H 1.07997 * 125.45011 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4402 0.6999 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0017 11 6 1.0754 -4.8129 -0.1976 12 1 0.2055 -4.6756 0.4446 13 6 1.7642 -6.1532 0.1357 14 6 1.1976 -7.1149 -0.9420 15 6 1.0757 -6.1733 -2.1659 16 7 0.6532 -4.8773 -1.6045 17 6 -0.0057 -3.9095 -2.2719 18 8 -0.2463 -2.8498 -1.7257 19 6 -0.4290 -4.1327 -3.6645 20 7 -1.1859 -3.3323 -4.3654 21 6 -1.4449 -3.7160 -5.5877 22 6 -0.8984 -4.8837 -5.9613 23 16 0.0094 -5.5190 -4.6579 24 1 -0.4850 0.8400 0.0004 25 1 0.3556 -2.3881 -0.0005 26 1 2.5765 -3.7778 0.9495 27 1 2.7848 -3.6560 -0.8140 28 1 1.4920 -6.4911 1.1356 29 1 2.8464 -6.0634 0.0418 30 1 0.2218 -7.5008 -0.6471 31 1 1.8934 -7.9294 -1.1434 32 1 0.3242 -6.5491 -2.8602 33 1 2.0393 -6.0742 -2.6658 34 1 -2.0605 -3.1307 -6.2547 35 1 -1.0104 -5.3459 -6.9309 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499936105.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:07 Heat of formation + Delta-G solvation = 57.719596 kcal Electronic energy + Delta-G solvation = -20236.118758 eV Core-core repulsion = 17169.759801 eV Total energy + Delta-G solvation = -3066.358956 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.10053 -39.27755 -36.88286 -34.25713 -31.83698 -31.21910 -30.20838 -28.75585 -26.30881 -24.93881 -23.20995 -22.25585 -21.42913 -19.96055 -19.06742 -18.12411 -16.95929 -16.45882 -16.28565 -15.35853 -14.90993 -14.65920 -14.29738 -13.67222 -13.59095 -13.44249 -13.26323 -12.91567 -12.77733 -12.41388 -11.97780 -11.76928 -11.53792 -11.14247 -10.82332 -10.68761 -10.61053 -10.46990 -10.05876 -9.81727 -9.61548 -9.48773 -9.03026 -8.85221 -8.63871 -8.25273 -6.55292 -5.42595 -2.70403 0.37569 1.23836 1.67321 2.61250 2.96535 3.59109 3.62989 3.64744 3.65233 4.30112 4.48543 4.73007 4.83813 4.88087 5.05336 5.05526 5.28768 5.34416 5.38383 5.45715 5.69297 5.80017 5.84732 5.94252 6.02854 6.04183 6.19444 6.38444 6.61236 6.81878 6.94705 7.59898 7.84039 7.92623 8.57293 8.79465 9.86817 10.50689 10.88321 11.78219 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.016211 B = 0.006585 C = 0.004969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.812602 B = 4250.896827 C = 5633.320744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.008 4.008 3 Si 0.897 3.103 4 H -0.293 1.293 5 H -0.293 1.293 6 H -0.285 1.285 7 C -0.239 4.239 8 H 0.061 0.939 9 N -0.719 5.719 10 C 0.145 3.855 11 C 0.135 3.865 12 H 0.079 0.921 13 C -0.124 4.124 14 C -0.126 4.126 15 C 0.088 3.912 16 N -0.612 5.612 17 C 0.579 3.421 18 O -0.408 6.408 19 C 0.029 3.971 20 N -0.401 5.401 21 C 0.031 3.969 22 C -0.294 4.294 23 S 0.162 5.838 24 H 0.250 0.750 25 H 0.397 0.603 26 H 0.020 0.980 27 H 0.020 0.980 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.174 0.826 35 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.545 -20.245 -9.032 22.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.205 4.205 3 Si 0.729 3.271 4 H -0.221 1.221 5 H -0.220 1.220 6 H -0.211 1.211 7 C -0.371 4.371 8 H 0.079 0.921 9 N -0.370 5.370 10 C 0.015 3.985 11 C 0.032 3.968 12 H 0.097 0.903 13 C -0.162 4.162 14 C -0.165 4.165 15 C -0.037 4.037 16 N -0.351 5.351 17 C 0.359 3.641 18 O -0.273 6.273 19 C -0.249 4.249 20 N -0.116 5.116 21 C -0.125 4.125 22 C -0.434 4.434 23 S 0.417 5.583 24 H 0.060 0.940 25 H 0.238 0.762 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.191 0.809 35 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 0.826 -19.779 -8.364 21.490 hybrid contribution -0.349 1.458 -1.148 1.888 sum 0.477 -18.321 -9.512 20.649 Atomic orbital electron populations 1.69728 1.04764 1.24696 1.56929 1.24687 0.95344 0.97105 1.03400 0.86352 0.78615 0.84886 0.77285 1.22120 1.21969 1.21061 1.19100 0.90456 0.84609 1.42960 0.92059 1.42763 1.06873 0.98895 1.88449 1.21000 0.93210 0.86565 0.97690 1.21951 0.98280 0.95815 0.80743 0.90316 1.22655 1.00956 0.93302 0.99296 1.22719 1.02156 0.97162 0.94416 1.22494 1.00026 0.84397 0.96760 1.48167 1.58000 1.16219 1.12753 1.16421 0.80666 0.84203 0.82765 1.91127 1.49800 1.21637 1.64748 1.27893 1.02775 0.94302 0.99928 1.66640 1.11405 1.28411 1.05180 1.21849 1.02788 0.95423 0.92441 1.27006 1.07396 1.02360 1.06596 1.84030 1.46157 1.24866 1.03271 0.94030 0.76181 0.96226 0.96201 0.89769 0.90113 0.90424 0.89712 0.90936 0.90772 0.80864 0.80534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -30.31 13.06 55.49 0.72 -29.59 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 3 Si 0.90 24.21 29.55 -169.99 -5.02 19.19 16 4 H -0.29 -7.96 7.11 56.52 0.40 -7.56 16 5 H -0.29 -7.90 7.11 56.52 0.40 -7.50 16 6 H -0.28 -7.39 7.11 56.52 0.40 -6.99 16 7 C -0.24 -7.31 9.99 -15.06 -0.15 -7.46 16 8 H 0.06 1.81 7.83 -52.49 -0.41 1.40 16 9 N -0.72 -19.97 4.10 -59.91 -0.25 -20.22 16 10 C 0.14 3.07 5.62 -4.04 -0.02 3.05 16 11 C 0.13 2.23 3.07 -66.95 -0.21 2.03 16 12 H 0.08 1.41 8.11 -51.93 -0.42 0.99 16 13 C -0.12 -1.34 6.45 -24.89 -0.16 -1.50 16 14 C -0.13 -1.08 7.09 -24.59 -0.17 -1.26 16 15 C 0.09 0.97 5.59 -2.53 -0.01 0.96 16 16 N -0.61 -10.07 3.06 -164.34 -0.50 -10.58 16 17 C 0.58 11.91 7.65 -12.60 -0.10 11.82 16 18 O -0.41 -10.87 13.29 5.26 0.07 -10.80 16 19 C 0.03 0.50 7.36 -14.43 -0.11 0.40 16 20 N -0.40 -7.52 10.60 -11.50 -0.12 -7.64 16 21 C 0.03 0.43 11.24 -19.44 -0.22 0.21 16 22 C -0.29 -3.21 11.09 29.32 0.33 -2.89 16 23 S 0.16 1.86 18.74 -107.50 -2.01 -0.15 16 24 H 0.25 8.03 8.31 -40.82 -0.34 7.69 16 25 H 0.40 11.88 5.15 -40.82 -0.21 11.67 16 26 H 0.02 0.41 8.09 -51.93 -0.42 -0.01 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.08 0.83 7.85 -51.93 -0.41 0.42 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.72 5.00 -29.32 -0.15 0.57 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.17 1.91 8.06 -52.49 -0.42 1.49 16 35 H 0.18 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 301.53 15.07 4.54 4.54 Total: -1.00 -38.60 301.53 -7.60 -46.20 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -4.11 Total: 4.06 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: -0.92 Total: 4.97 kcal Atomic # 7 Polarization: -67.87 SS G_CDS: -0.15 Total: -68.02 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.07 Total: -10.80 kcal Atomic # 14 Polarization: 24.21 SS G_CDS: -5.02 Total: 19.19 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.01 Total: -0.15 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -38.60 -7.60 -46.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499936105.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.921 kcal (2) G-P(sol) polarization free energy of solvation -38.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds