Wall clock time and date at job start Tue Mar 31 2020 05:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 119.99785 * 2 1 4 4 H 1.48501 * 109.47138 * 269.99967 * 3 2 1 5 5 H 1.48496 * 109.47336 * 30.00168 * 3 2 1 6 6 H 1.48505 * 109.47171 * 150.00514 * 3 2 1 7 7 C 1.38815 * 120.00207 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00225 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99523 * 359.97438 * 7 2 1 10 10 C 1.46508 * 119.99420 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46638 * 187.81563 * 10 9 7 12 12 H 1.08993 * 110.00398 * 314.65017 * 11 10 9 13 13 C 1.54333 * 109.99021 * 193.61354 * 11 10 9 14 14 C 1.55156 * 103.02334 * 218.66948 * 13 11 10 15 15 C 1.54902 * 101.58067 * 35.30739 * 14 13 11 16 16 N 1.47029 * 109.88281 * 75.75176 * 11 10 9 17 17 C 1.34772 * 125.64503 * 298.39136 * 16 11 10 18 18 O 1.21618 * 120.00044 * 3.36228 * 17 16 11 19 19 C 1.47257 * 119.99883 * 183.08319 * 17 16 11 20 20 N 1.30563 * 125.54322 * 172.62584 * 19 17 16 21 21 C 1.30704 * 115.90563 * 179.97438 * 20 19 17 22 22 C 1.34233 * 115.78511 * 0.02562 * 21 20 19 23 23 S 1.71072 * 109.08867 * 359.72395 * 22 21 20 24 24 H 0.96993 * 120.00228 * 359.97438 * 1 2 3 25 25 H 0.96993 * 120.00622 * 0.02562 * 9 7 2 26 26 H 1.08994 * 109.46638 * 67.81954 * 10 9 7 27 27 H 1.08991 * 109.47157 * 307.81654 * 10 9 7 28 28 H 1.09003 * 110.84852 * 100.20103 * 13 11 10 29 29 H 1.09002 * 110.66863 * 337.05120 * 13 11 10 30 30 H 1.09000 * 111.00465 * 277.23420 * 14 13 11 31 31 H 1.09001 * 111.00685 * 153.38176 * 14 13 11 32 32 H 1.09001 * 110.36775 * 204.14842 * 15 14 13 33 33 H 1.09001 * 110.36880 * 81.83010 * 15 14 13 34 34 H 1.07999 * 122.10415 * 179.97438 * 21 20 19 35 35 H 1.07997 * 125.45011 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4402 0.6999 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0017 11 6 1.0754 -4.8129 -0.1976 12 1 0.2055 -4.6756 0.4446 13 6 1.7642 -6.1532 0.1357 14 6 1.1976 -7.1149 -0.9420 15 6 1.0757 -6.1733 -2.1659 16 7 0.6532 -4.8773 -1.6045 17 6 -0.0057 -3.9095 -2.2719 18 8 -0.2463 -2.8498 -1.7257 19 6 -0.4290 -4.1327 -3.6645 20 7 -1.1859 -3.3323 -4.3654 21 6 -1.4449 -3.7160 -5.5877 22 6 -0.8984 -4.8837 -5.9613 23 16 0.0094 -5.5190 -4.6579 24 1 -0.4850 0.8400 0.0004 25 1 0.3556 -2.3881 -0.0005 26 1 2.5765 -3.7778 0.9495 27 1 2.7848 -3.6560 -0.8140 28 1 1.4920 -6.4911 1.1356 29 1 2.8464 -6.0634 0.0418 30 1 0.2218 -7.5008 -0.6471 31 1 1.8934 -7.9294 -1.1434 32 1 0.3242 -6.5491 -2.8602 33 1 2.0393 -6.0742 -2.6658 34 1 -2.0605 -3.1307 -6.2547 35 1 -1.0104 -5.3459 -6.9309 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499936105.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:06 Heat of formation + Delta-G solvation = 27.229042 kcal Electronic energy + Delta-G solvation = -20237.440927 eV Core-core repulsion = 17169.759801 eV Total energy + Delta-G solvation = -3067.681126 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.37140 -40.41261 -38.25680 -36.24448 -33.49211 -32.73826 -31.31938 -30.32718 -27.46617 -26.68796 -24.69468 -23.81091 -22.51792 -21.20435 -20.16168 -19.53261 -18.82946 -17.64768 -17.57991 -16.79578 -16.48082 -16.07306 -15.67922 -15.20904 -14.94040 -14.84604 -14.59696 -14.33781 -14.05521 -13.75357 -13.29498 -13.13561 -12.92656 -12.84848 -12.70844 -12.24996 -12.00102 -11.70023 -11.60507 -11.50683 -11.20396 -10.89904 -10.66799 -10.49145 -9.87934 -9.63657 -8.78458 -7.79676 -5.07216 -0.72340 0.16461 0.68165 1.39756 1.44421 1.45050 1.52430 1.74608 2.30277 2.59207 3.27174 3.48399 3.62141 3.73400 3.90420 4.02484 4.20878 4.30025 4.38297 4.40039 4.42051 4.55714 4.79886 4.82576 4.88197 5.03995 5.05222 5.15623 5.19200 5.42210 5.47734 5.53296 6.34757 6.40281 6.72540 7.21071 7.48717 8.34917 8.57588 9.42331 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.016211 B = 0.006585 C = 0.004969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.812602 B = 4250.896827 C = 5633.320744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.080 4.080 3 Si 0.968 3.032 4 H -0.296 1.296 5 H -0.294 1.294 6 H -0.264 1.264 7 C -0.243 4.243 8 H 0.067 0.933 9 N -0.736 5.736 10 C 0.140 3.860 11 C 0.133 3.867 12 H 0.054 0.946 13 C -0.112 4.112 14 C -0.110 4.110 15 C 0.076 3.924 16 N -0.609 5.609 17 C 0.568 3.432 18 O -0.496 6.496 19 C -0.043 4.043 20 N -0.456 5.456 21 C 0.000 4.000 22 C -0.267 4.267 23 S 0.279 5.721 24 H 0.242 0.758 25 H 0.384 0.616 26 H 0.032 0.968 27 H 0.013 0.987 28 H 0.104 0.896 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.127 0.873 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.192 0.808 35 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.399 -24.109 -10.854 26.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.272 4.272 3 Si 0.798 3.202 4 H -0.224 1.224 5 H -0.221 1.221 6 H -0.189 1.189 7 C -0.376 4.376 8 H 0.085 0.915 9 N -0.384 5.384 10 C 0.013 3.987 11 C 0.029 3.971 12 H 0.072 0.928 13 C -0.151 4.151 14 C -0.148 4.148 15 C -0.047 4.047 16 N -0.346 5.346 17 C 0.351 3.649 18 O -0.367 6.367 19 C -0.317 4.317 20 N -0.173 5.173 21 C -0.156 4.156 22 C -0.407 4.407 23 S 0.533 5.467 24 H 0.050 0.950 25 H 0.223 0.777 26 H 0.050 0.950 27 H 0.031 0.969 28 H 0.122 0.878 29 H 0.111 0.889 30 H 0.105 0.895 31 H 0.145 0.855 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.209 0.791 35 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 2.756 -23.754 -10.175 25.988 hybrid contribution -0.883 2.426 -0.739 2.685 sum 1.873 -21.328 -10.914 24.031 Atomic orbital electron populations 1.69966 1.06627 1.24837 1.59147 1.25589 0.96284 1.00958 1.04397 0.85214 0.77945 0.80074 0.76988 1.22380 1.22052 1.18866 1.19568 0.90867 0.86100 1.41036 0.91503 1.43028 1.06673 1.00424 1.88283 1.21235 0.93928 0.85972 0.97590 1.21974 0.96701 0.97328 0.81067 0.92833 1.22669 1.01085 0.90025 1.01281 1.22784 1.03683 0.96827 0.91515 1.22942 1.00977 0.82279 0.98479 1.48294 1.56358 1.17286 1.12670 1.17092 0.79835 0.83823 0.84105 1.91059 1.53549 1.25004 1.67128 1.27316 1.06038 0.98471 0.99883 1.66582 1.12540 1.30864 1.07360 1.22171 1.04537 0.97308 0.91561 1.27688 1.04228 1.00614 1.08171 1.83363 1.43311 1.19652 1.00365 0.94951 0.77717 0.95017 0.96857 0.87804 0.88897 0.89530 0.85457 0.89530 0.89088 0.79128 0.75815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -67.31 13.06 21.65 0.28 -67.02 16 2 C -0.08 -5.22 5.50 84.86 0.47 -4.75 16 3 Si 0.97 51.83 29.55 68.60 2.03 53.86 16 4 H -0.30 -15.80 7.11 99.48 0.71 -15.09 16 5 H -0.29 -15.61 7.11 99.48 0.71 -14.90 16 6 H -0.26 -13.06 7.11 99.48 0.71 -12.35 16 7 C -0.24 -15.47 9.99 84.03 0.84 -14.63 16 8 H 0.07 4.05 7.83 -2.91 -0.02 4.02 16 9 N -0.74 -43.19 4.10 -343.45 -1.41 -44.60 16 10 C 0.14 6.14 5.62 86.38 0.49 6.63 16 11 C 0.13 4.44 3.07 45.34 0.14 4.58 16 12 H 0.05 2.05 8.11 -2.39 -0.02 2.03 16 13 C -0.11 -2.10 6.45 31.79 0.20 -1.90 16 14 C -0.11 -1.38 7.09 31.98 0.23 -1.15 16 15 C 0.08 1.44 5.59 86.85 0.49 1.92 16 16 N -0.61 -20.20 3.06 -792.09 -2.43 -22.63 16 17 C 0.57 24.84 7.65 86.61 0.66 25.50 16 18 O -0.50 -28.91 13.29 -4.09 -0.05 -28.97 16 19 C -0.04 -1.57 7.36 87.25 0.64 -0.93 16 20 N -0.46 -17.87 10.60 -190.31 -2.02 -19.89 16 21 C 0.00 -0.01 11.24 83.95 0.94 0.94 16 22 C -0.27 -4.82 11.09 66.91 0.74 -4.08 16 23 S 0.28 5.46 18.74 -56.49 -1.06 4.40 16 24 H 0.24 16.53 8.31 -92.71 -0.77 15.76 16 25 H 0.38 24.82 5.15 -92.71 -0.48 24.35 16 26 H 0.03 1.32 8.09 -2.39 -0.02 1.30 16 27 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.09 1.56 7.85 -2.39 -0.02 1.54 16 30 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.09 1.37 5.00 -16.76 -0.08 1.28 16 33 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.19 4.09 8.06 -2.91 -0.02 4.06 16 35 H 0.23 1.85 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -95.41 301.53 1.75 -93.66 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 0.56 Total: 19.06 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: 5.84 Total: 12.13 kcal Atomic # 7 Polarization: -148.57 SS G_CDS: -5.57 Total: -154.14 kcal Atomic # 8 Polarization: -28.91 SS G_CDS: -0.05 Total: -28.97 kcal Atomic # 14 Polarization: 51.83 SS G_CDS: 2.03 Total: 53.86 kcal Atomic # 16 Polarization: 5.46 SS G_CDS: -1.06 Total: 4.40 kcal Total: -95.41 1.75 -93.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499936105.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.890 kcal (2) G-P(sol) polarization free energy of solvation -95.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds