Wall clock time and date at job start Tue Mar 31 2020 05:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00140 * 2 1 4 4 H 1.48498 * 109.47336 * 240.00244 * 3 2 1 5 5 H 1.48498 * 109.47085 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46873 * 120.00038 * 3 2 1 7 7 C 1.38808 * 119.99803 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99917 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00064 * 359.97438 * 7 2 1 10 10 C 1.46508 * 119.99805 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46807 * 180.02562 * 10 9 7 12 12 H 1.09001 * 110.91988 * 51.09511 * 11 10 9 13 13 C 1.55157 * 111.00230 * 175.00251 * 11 10 9 14 14 C 1.54321 * 103.10033 * 153.66249 * 13 11 10 15 15 N 1.47019 * 107.27531 * 337.71659 * 14 13 11 16 16 C 1.34777 * 125.65068 * 178.90607 * 15 14 13 17 17 O 1.21573 * 119.99879 * 180.02562 * 16 15 14 18 18 C 1.47693 * 119.99900 * 0.02562 * 16 15 14 19 19 C 1.39481 * 122.10153 * 179.74074 * 18 16 15 20 20 C 1.35007 * 111.68217 * 179.78648 * 19 18 16 21 21 S 1.71754 * 105.44848 * 0.42925 * 20 19 18 22 22 N 1.30606 * 122.10143 * 0.02772 * 18 16 15 23 23 C 1.47431 * 108.70142 * 358.94050 * 15 14 13 24 24 H 0.96998 * 119.99684 * 359.97438 * 1 2 3 25 25 H 0.96996 * 119.99873 * 0.02562 * 9 7 2 26 26 H 1.08995 * 109.46564 * 60.00176 * 10 9 7 27 27 H 1.08993 * 109.47195 * 300.00058 * 10 9 7 28 28 H 1.09002 * 110.72219 * 35.20946 * 13 11 10 29 29 H 1.09003 * 110.71618 * 272.11558 * 13 11 10 30 30 H 1.09001 * 109.88480 * 97.13771 * 14 13 11 31 31 H 1.09004 * 109.87910 * 218.29695 * 14 13 11 32 32 H 1.08001 * 124.15792 * 359.97438 * 19 18 16 33 33 H 1.07998 * 127.27104 * 180.16951 * 20 19 18 34 34 H 1.08999 * 110.36190 * 142.96411 * 23 15 14 35 35 H 1.08998 * 110.36491 * 265.18090 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0638 -4.8197 -0.0012 12 1 0.3252 -4.6998 -0.7938 13 6 1.7992 -6.1801 -0.1274 14 6 0.8261 -7.1679 0.5499 15 7 -0.0332 -6.3858 1.4507 16 6 -1.0301 -6.8803 2.2111 17 8 -1.6787 -6.1369 2.9215 18 6 -1.3345 -8.3252 2.1814 19 6 -2.3523 -8.8844 2.9539 20 6 -2.4503 -10.2170 2.7609 21 16 -1.2231 -10.6060 1.6240 22 7 -0.6639 -9.1605 1.4341 23 6 0.3756 -4.9709 1.3838 24 1 -0.4849 0.8401 0.0004 25 1 0.3556 -2.3880 -0.0005 26 1 2.6846 -3.7145 0.8894 27 1 2.6847 -3.7146 -0.8905 28 1 2.7521 -6.1539 0.4012 29 1 1.9479 -6.4423 -1.1749 30 1 0.2168 -7.6646 -0.2051 31 1 1.3869 -7.9073 1.1218 32 1 -2.9863 -8.3201 3.6219 33 1 -3.1495 -10.8956 3.2267 34 1 -0.4969 -4.3207 1.4464 35 1 1.0778 -4.7407 2.1850 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690716066.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:18 Heat of formation + Delta-G solvation = 28.994246 kcal Electronic energy + Delta-G solvation = -19239.294542 eV Core-core repulsion = 16171.689961 eV Total energy + Delta-G solvation = -3067.604581 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.64347 -38.82304 -37.34212 -34.65421 -32.46546 -31.62129 -30.36483 -28.71532 -27.04287 -25.05158 -23.44696 -21.94257 -21.43388 -20.00752 -19.43128 -18.62907 -17.44913 -16.88598 -16.16412 -15.67769 -15.23980 -14.54788 -14.35055 -13.99053 -13.61899 -13.51999 -13.35325 -13.13217 -12.67866 -12.50592 -12.21469 -11.82615 -11.51458 -11.37510 -11.09872 -10.82153 -10.57030 -10.55546 -10.39076 -10.14779 -10.02827 -9.94478 -9.64758 -9.11707 -8.84711 -8.50623 -6.89967 -5.72751 -3.02185 0.32555 1.16773 1.53594 1.58380 3.00356 3.18881 3.46931 3.50974 3.52399 4.33072 4.55786 4.62242 4.79681 4.91275 5.03692 5.09482 5.26273 5.44081 5.53212 5.59039 5.61987 5.82214 5.93045 5.98751 6.05952 6.11121 6.12941 6.30092 6.40901 6.48738 6.72410 6.85527 7.53618 7.72180 8.10916 8.45541 9.56613 10.13745 10.48245 11.49910 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.041230 B = 0.003265 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.949825 B = 8574.971947 C = 9103.563628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.733 5.733 10 C 0.165 3.835 11 C -0.104 4.104 12 H 0.086 0.914 13 C -0.129 4.129 14 C 0.116 3.884 15 N -0.599 5.599 16 C 0.598 3.402 17 O -0.529 6.529 18 C 0.058 3.942 19 C -0.133 4.133 20 C -0.282 4.282 21 S 0.451 5.549 22 N -0.511 5.511 23 C 0.115 3.885 24 H 0.256 0.744 25 H 0.384 0.616 26 H 0.022 0.978 27 H 0.025 0.975 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.173 0.827 33 H 0.186 0.814 34 H 0.085 0.915 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.187 -25.692 2.772 25.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.739 3.261 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.378 5.378 10 C 0.037 3.963 11 C -0.124 4.124 12 H 0.104 0.896 13 C -0.167 4.167 14 C -0.007 4.007 15 N -0.331 5.331 16 C 0.381 3.619 17 O -0.405 6.405 18 C -0.117 4.117 19 C -0.166 4.166 20 C -0.431 4.431 21 S 0.606 5.394 22 N -0.345 5.345 23 C -0.006 4.006 24 H 0.066 0.934 25 H 0.218 0.782 26 H 0.040 0.960 27 H 0.043 0.957 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.190 0.810 33 H 0.203 0.797 34 H 0.104 0.896 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.175 -26.249 1.874 26.342 hybrid contribution -0.957 2.041 1.163 2.536 sum -2.131 -24.208 3.038 24.491 Atomic orbital electron populations 1.69654 1.05108 1.25798 1.57492 1.24752 0.95518 0.97712 1.02938 0.86259 0.78501 0.83552 0.77807 1.21295 1.21699 1.21267 1.19170 0.90990 0.84152 1.43009 0.91211 1.42371 1.05905 0.99935 1.89552 1.20581 0.92713 0.84748 0.98216 1.22672 0.98484 0.94833 0.96403 0.89608 1.22726 0.98355 0.94397 1.01242 1.22062 0.92212 0.93748 0.92718 1.48361 1.32188 1.10415 1.42165 1.16846 0.79896 0.84871 0.80305 1.90839 1.50237 1.58291 1.41098 1.21203 0.96738 0.95736 0.98039 1.21435 0.99303 0.94130 1.01734 1.27169 1.08203 1.00144 1.07607 1.80551 1.18297 1.09531 1.31069 1.72593 1.29925 1.05635 1.26396 1.22510 1.00296 0.80049 0.97794 0.93428 0.78201 0.95988 0.95735 0.90420 0.90012 0.91014 0.91166 0.81011 0.79677 0.89627 0.90758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.73 13.06 55.49 0.72 -28.00 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.72 29.55 -169.99 -5.02 17.69 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 8 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 9 N -0.73 -18.73 5.56 -59.91 -0.33 -19.06 16 10 C 0.17 3.27 5.73 -4.04 -0.02 3.25 16 11 C -0.10 -1.70 3.07 -88.21 -0.27 -1.97 16 12 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 13 C -0.13 -1.60 6.40 -24.90 -0.16 -1.76 16 14 C 0.12 1.47 5.45 -3.07 -0.02 1.45 16 15 N -0.60 -9.37 3.33 -171.38 -0.57 -9.94 16 16 C 0.60 9.81 7.84 -12.40 -0.10 9.72 16 17 O -0.53 -10.32 16.91 5.30 0.09 -10.23 16 18 C 0.06 0.75 6.61 -84.06 -0.56 0.19 16 19 C -0.13 -1.40 9.98 -40.27 -0.40 -1.81 16 20 C -0.28 -2.04 11.41 29.58 0.34 -1.70 16 21 S 0.45 3.29 23.20 -107.50 -2.49 0.79 16 22 N -0.51 -5.75 8.21 24.84 0.20 -5.55 16 23 C 0.11 1.99 6.35 -2.26 -0.01 1.97 16 24 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 25 H 0.38 10.39 7.67 -40.82 -0.31 10.08 16 26 H 0.02 0.44 7.98 -51.93 -0.41 0.03 16 27 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.91 8.04 -51.93 -0.42 0.49 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.88 7.50 -51.93 -0.39 0.49 16 31 H 0.07 0.84 7.63 -51.93 -0.40 0.44 16 32 H 0.17 1.74 7.99 -52.49 -0.42 1.32 16 33 H 0.19 0.74 8.06 -52.49 -0.42 0.31 16 34 H 0.09 1.69 8.04 -51.93 -0.42 1.27 16 35 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 LS Contribution 310.85 15.07 4.68 4.68 Total: -1.00 -33.65 310.85 -8.58 -42.23 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -4.42 Total: 5.52 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -1.45 Total: 1.87 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: 0.03 Total: -62.55 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.69 kcal Atomic # 16 Polarization: 3.29 SS G_CDS: -2.49 Total: 0.79 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.65 -8.58 -42.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690716066.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.221 kcal (2) G-P(sol) polarization free energy of solvation -33.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds