Wall clock time and date at job start Tue Mar 31 2020 05:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00125 * 2 1 4 4 H 1.48495 * 109.47349 * 239.99453 * 3 2 1 5 5 H 1.48505 * 109.47077 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47093 * 119.99374 * 3 2 1 7 7 C 1.38815 * 120.00325 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00267 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99408 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99589 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46684 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.47756 * 294.99812 * 11 10 9 13 13 N 1.46497 * 109.47333 * 55.00709 * 11 10 9 14 14 C 1.34779 * 120.00134 * 204.99712 * 13 11 10 15 15 O 1.21624 * 119.99890 * 359.97438 * 14 13 11 16 16 C 1.47249 * 120.00129 * 179.97438 * 14 13 11 17 17 N 1.30558 * 125.54516 * 359.69306 * 16 14 13 18 18 C 1.30697 * 115.91129 * 179.77558 * 17 16 14 19 19 C 1.34233 * 115.78133 * 0.52307 * 18 17 16 20 20 S 1.71067 * 109.09074 * 359.72232 * 19 18 17 21 21 C 1.53009 * 109.46984 * 175.00142 * 11 10 9 22 22 C 1.52996 * 117.49844 * 248.75159 * 21 11 10 23 23 C 1.52999 * 117.50079 * 180.08843 * 21 11 10 24 24 H 0.97000 * 119.99693 * 0.02562 * 1 2 3 25 25 H 0.96995 * 120.00302 * 0.27434 * 9 7 2 26 26 H 1.09000 * 109.47212 * 300.00262 * 10 9 7 27 27 H 1.09001 * 109.46577 * 60.00336 * 10 9 7 28 28 H 0.97001 * 120.00330 * 24.98715 * 13 11 10 29 29 H 1.08001 * 122.11222 * 180.22100 * 18 17 16 30 30 H 1.08007 * 125.45516 * 179.72301 * 19 18 17 31 31 H 1.09000 * 115.54486 * 34.41403 * 21 11 10 32 32 H 1.08994 * 117.50040 * 359.97438 * 22 21 11 33 33 H 1.08998 * 117.50004 * 145.02314 * 22 21 11 34 34 H 1.08998 * 117.49656 * 214.97947 * 23 21 11 35 35 H 1.09001 * 117.49398 * 359.97438 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0638 -4.8196 -0.0001 12 1 0.4972 -4.8139 0.9310 13 7 0.1449 -4.6758 -1.1319 14 6 -1.0796 -5.2367 -1.0813 15 8 -1.4215 -5.8626 -0.0961 16 6 -2.0035 -5.0917 -2.2187 17 7 -1.7522 -4.4413 -3.3225 18 6 -2.7087 -4.4368 -4.2131 19 6 -3.8285 -5.0929 -3.8705 20 16 -3.6299 -5.7608 -2.3082 21 6 1.8247 -6.1412 -0.1258 22 6 1.6673 -6.9257 -1.4298 23 6 1.0019 -7.4309 -0.1471 24 1 -0.4850 0.8401 -0.0004 25 1 0.3556 -2.3880 -0.0039 26 1 2.6848 -3.7145 -0.8894 27 1 2.6847 -3.7144 0.8906 28 1 0.4176 -4.1768 -1.9178 29 1 -2.6066 -3.9326 -5.1627 30 1 -4.7133 -5.1844 -4.4831 31 1 2.7969 -6.1724 0.3661 32 1 1.0213 -6.5007 -2.1980 33 1 2.5357 -7.4736 -1.7956 34 1 1.4329 -8.3108 0.3305 35 1 -0.0815 -7.3379 -0.0712 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754455357.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:28 Heat of formation + Delta-G solvation = 35.040161 kcal Electronic energy + Delta-G solvation = -19717.682672 eV Core-core repulsion = 16650.340262 eV Total energy + Delta-G solvation = -3067.342410 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.51832 -40.34506 -38.37361 -36.55671 -34.87196 -33.14932 -31.59520 -29.76567 -27.31193 -25.91512 -23.56778 -23.34885 -22.92997 -21.33591 -20.77710 -19.60985 -19.09600 -18.01725 -17.37706 -17.17174 -16.63840 -16.10746 -15.85952 -15.42127 -15.19589 -14.89685 -14.80954 -14.44928 -14.27922 -13.63714 -13.13662 -12.85986 -12.73092 -12.68336 -12.48974 -12.33612 -12.13566 -11.84300 -11.60903 -11.19299 -10.97639 -10.87318 -10.81734 -10.70168 -10.12585 -9.87932 -9.01444 -7.93465 -5.23513 -0.79426 0.11886 0.71686 1.31612 1.47963 1.51279 1.57122 2.09157 2.19301 2.56231 2.93587 3.10520 3.40833 3.61950 3.92439 4.02594 4.07361 4.17822 4.28705 4.38184 4.40401 4.48662 4.60352 4.82399 4.86527 5.04310 5.07593 5.11366 5.25031 5.37486 5.46605 5.51187 6.26249 6.28919 6.56899 7.01132 7.33548 8.06591 8.30428 9.29488 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.014575 B = 0.005646 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.587455 B = 4957.765527 C = 6358.722047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.075 4.075 3 Si 0.975 3.025 4 H -0.276 1.276 5 H -0.298 1.298 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.081 0.919 9 N -0.744 5.744 10 C 0.150 3.850 11 C 0.176 3.824 12 H 0.071 0.929 13 N -0.680 5.680 14 C 0.595 3.405 15 O -0.555 6.555 16 C -0.061 4.061 17 N -0.441 5.441 18 C 0.007 3.993 19 C -0.253 4.253 20 S 0.269 5.731 21 C -0.165 4.165 22 C -0.167 4.167 23 C -0.185 4.185 24 H 0.249 0.751 25 H 0.373 0.627 26 H 0.038 0.962 27 H 0.046 0.954 28 H 0.412 0.588 29 H 0.201 0.799 30 H 0.226 0.774 31 H 0.132 0.868 32 H 0.079 0.921 33 H 0.112 0.888 34 H 0.108 0.892 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.894 -15.694 -8.504 18.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.267 4.267 3 Si 0.804 3.196 4 H -0.202 1.202 5 H -0.225 1.225 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.098 0.902 9 N -0.387 5.387 10 C 0.023 3.977 11 C 0.071 3.929 12 H 0.089 0.911 13 N -0.330 5.330 14 C 0.379 3.621 15 O -0.435 6.435 16 C -0.333 4.333 17 N -0.159 5.159 18 C -0.150 4.150 19 C -0.394 4.394 20 S 0.523 5.477 21 C -0.185 4.185 22 C -0.204 4.204 23 C -0.222 4.222 24 H 0.058 0.942 25 H 0.205 0.795 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.248 0.752 29 H 0.218 0.782 30 H 0.242 0.758 31 H 0.150 0.850 32 H 0.097 0.903 33 H 0.130 0.870 34 H 0.126 0.874 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.039 -16.372 -7.134 18.556 hybrid contribution 0.139 1.979 -1.141 2.289 sum -4.901 -14.393 -8.275 17.311 Atomic orbital electron populations 1.69842 1.06748 1.25995 1.59404 1.25587 0.96311 1.01194 1.03632 0.85187 0.77110 0.79037 0.78238 1.20239 1.22489 1.20345 1.19610 0.91626 0.85069 1.41320 0.90155 1.42515 1.05583 1.01003 1.89552 1.21056 0.93308 0.83683 0.99635 1.20688 0.89583 0.93949 0.88710 0.91081 1.45735 1.13585 1.52830 1.20872 1.16956 0.81413 0.79062 0.84654 1.90741 1.76565 1.43298 1.32866 1.27504 1.00216 1.07244 0.98385 1.66784 1.33384 1.14902 1.00863 1.22192 0.88623 1.02893 1.01287 1.27415 1.05716 1.04443 1.01808 1.83816 1.08376 1.45288 1.10267 1.22636 1.01379 0.90809 1.03638 1.22948 1.03390 1.03196 0.90883 1.23304 1.00264 0.97150 1.01441 0.94199 0.79546 0.94441 0.93650 0.75155 0.78204 0.75782 0.85049 0.90256 0.86968 0.87353 0.88892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.45 13.06 21.65 0.28 -60.16 16 2 C -0.08 -4.34 5.50 84.86 0.47 -3.88 16 3 Si 0.98 46.45 29.55 68.60 2.03 48.47 16 4 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 5 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 6 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 7 C -0.24 -13.64 9.99 84.03 0.84 -12.80 16 8 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 9 N -0.74 -37.94 5.44 -343.44 -1.87 -39.81 16 10 C 0.15 5.89 5.80 86.38 0.50 6.39 16 11 C 0.18 6.12 2.59 44.99 0.12 6.24 16 12 H 0.07 2.81 7.58 -2.39 -0.02 2.79 16 13 N -0.68 -24.16 3.05 -445.96 -1.36 -25.52 16 14 C 0.60 21.34 6.64 86.61 0.58 21.92 16 15 O -0.56 -21.46 13.97 -4.11 -0.06 -21.52 16 16 C -0.06 -1.92 7.46 87.25 0.65 -1.27 16 17 N -0.44 -13.50 10.24 -190.32 -1.95 -15.45 16 18 C 0.01 0.15 11.24 83.95 0.94 1.09 16 19 C -0.25 -4.35 11.09 66.91 0.74 -3.61 16 20 S 0.27 6.06 23.03 -56.49 -1.30 4.76 16 21 C -0.17 -4.57 5.71 -10.79 -0.06 -4.63 16 22 C -0.17 -4.21 9.74 30.62 0.30 -3.91 16 23 C -0.18 -4.93 9.82 30.62 0.30 -4.63 16 24 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 25 H 0.37 20.82 7.33 -92.71 -0.68 20.14 16 26 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.41 15.14 8.26 -92.71 -0.77 14.37 16 29 H 0.20 3.30 8.06 -2.91 -0.02 3.28 16 30 H 0.23 1.82 8.06 -2.91 -0.02 1.79 16 31 H 0.13 3.12 8.11 -2.39 -0.02 3.11 16 32 H 0.08 2.22 6.67 -2.39 -0.02 2.21 16 33 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.09 2.97 5.01 -2.39 -0.01 2.96 16 Total: -1.00 -69.75 313.02 0.84 -68.90 By element: Atomic # 1 Polarization: 39.72 SS G_CDS: -0.31 Total: 39.41 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: 5.37 Total: 0.92 kcal Atomic # 7 Polarization: -136.05 SS G_CDS: -4.89 Total: -140.95 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.06 Total: -21.52 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.47 kcal Atomic # 16 Polarization: 6.06 SS G_CDS: -1.30 Total: 4.76 kcal Total: -69.75 0.84 -68.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754455357.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.945 kcal (2) G-P(sol) polarization free energy of solvation -69.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds