Wall clock time and date at job start Tue Mar 31 2020 05:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.47305 * 2 1 4 4 C 1.46497 * 120.00322 * 270.00146 * 3 2 1 5 5 C 1.50707 * 109.47162 * 269.99844 * 4 3 2 6 6 H 1.07998 * 119.99576 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99930 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99982 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47241 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47303 * 119.99759 * 9 7 5 12 12 H 1.48495 * 109.47340 * 239.99921 * 9 7 5 13 13 C 1.34780 * 120.00111 * 89.99580 * 3 2 1 14 14 O 1.21280 * 120.00423 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99795 * 0.02562 * 13 3 2 16 16 C 1.50703 * 109.47064 * 179.97438 * 15 13 3 17 17 C 1.38234 * 120.00769 * 99.99994 * 16 15 13 18 18 C 1.38216 * 120.01261 * 179.97438 * 17 16 15 19 19 C 1.38263 * 120.02947 * 0.04121 * 18 17 16 20 20 C 1.38193 * 120.01011 * 359.97438 * 19 18 17 21 21 C 1.38333 * 120.00619 * 279.72404 * 16 15 13 22 22 Cl 1.73602 * 120.01085 * 359.97438 * 21 16 15 23 23 H 1.09005 * 109.47062 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47263 * 299.99631 * 1 2 3 25 25 H 1.08996 * 109.47107 * 60.00334 * 1 2 3 26 26 H 1.09006 * 109.47320 * 239.99881 * 2 1 3 27 27 H 1.09002 * 109.47139 * 120.00107 * 2 1 3 28 28 H 1.09000 * 109.47018 * 29.99405 * 4 3 2 29 29 H 1.09000 * 109.47828 * 149.99700 * 4 3 2 30 30 H 0.97001 * 119.99961 * 180.02562 * 8 7 5 31 31 H 1.09002 * 109.47060 * 299.99722 * 15 13 3 32 32 H 1.09001 * 109.47380 * 59.99809 * 15 13 3 33 33 H 1.08005 * 119.99257 * 359.97438 * 17 16 15 34 34 H 1.08009 * 119.98600 * 180.02562 * 18 17 16 35 35 H 1.07995 * 119.99388 * 179.97438 * 19 18 17 36 36 H 1.08004 * 120.00707 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 3.3489 3.1249 -3.6185 9 14 5.9132 2.0955 -3.4175 10 1 6.6009 1.2405 -2.4169 11 1 5.9202 1.4163 -4.7380 12 1 6.6210 3.3964 -3.5262 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9922 1.3059 2.4723 16 6 2.3191 2.2291 3.6178 17 6 1.3050 2.8966 4.2788 18 6 1.6046 3.7428 5.3297 19 6 2.9187 3.9230 5.7200 20 6 3.9334 3.2565 5.0597 21 6 3.6335 2.4042 4.0117 22 17 4.9069 1.5602 3.1871 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.5818 1.6876 -2.0283 29 1 2.0956 3.1410 -1.1384 30 1 3.6747 3.5148 -4.4447 31 1 0.9443 1.0114 2.5302 32 1 2.6227 0.4186 2.5299 33 1 0.2783 2.7568 3.9739 34 1 0.8118 4.2638 5.8461 35 1 3.1522 4.5847 6.5409 36 1 4.9598 3.3969 5.3649 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042454263.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:01 Heat of formation + Delta-G solvation = -24.327345 kcal Electronic energy + Delta-G solvation = -19780.385301 eV Core-core repulsion = 16676.132065 eV Total energy + Delta-G solvation = -3104.253236 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.74546 -38.45503 -36.19092 -35.22506 -33.04410 -32.43810 -30.64862 -30.05215 -28.21637 -26.34366 -23.04790 -22.83999 -22.62030 -21.30965 -18.33256 -16.93893 -16.53583 -16.23490 -15.75227 -15.57203 -14.98383 -14.29943 -14.08358 -13.76079 -13.46969 -13.34072 -13.00862 -12.77590 -12.49156 -11.99062 -11.80545 -11.58220 -11.49124 -11.31977 -11.19767 -11.10774 -10.86028 -10.68484 -10.58488 -10.44427 -10.08859 -9.56691 -9.06293 -8.71567 -8.47811 -8.39573 -7.60242 -6.00409 -4.04227 1.24775 1.32408 2.37669 3.32052 3.39534 3.43008 3.50898 3.63116 4.08558 4.48738 4.72175 4.81480 4.97124 5.19561 5.25010 5.33572 5.35294 5.41044 5.51425 5.61007 5.68433 5.77185 5.84361 5.95037 6.07370 6.25582 6.26372 6.40332 6.47449 6.50594 6.84217 7.11809 7.49458 7.61035 7.96903 8.28722 8.48063 8.95907 9.16589 9.60787 11.07779 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.017791 B = 0.005675 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.471671 B = 4932.745887 C = 5695.878689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.105 3.895 3 N -0.598 5.598 4 C 0.247 3.753 5 C -0.521 4.521 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.895 3.105 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.512 3.488 14 O -0.531 6.531 15 C -0.111 4.111 16 C -0.047 4.047 17 C -0.100 4.100 18 C -0.118 4.118 19 C -0.115 4.115 20 C -0.112 4.112 21 C -0.017 4.017 22 Cl -0.062 7.062 23 H 0.059 0.941 24 H 0.050 0.950 25 H 0.060 0.940 26 H 0.082 0.918 27 H 0.064 0.936 28 H 0.031 0.969 29 H 0.042 0.958 30 H 0.262 0.738 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.975 -5.097 17.074 18.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.019 4.019 3 N -0.330 5.330 4 C 0.128 3.872 5 C -0.560 4.560 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.723 3.277 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.298 3.702 14 O -0.407 6.407 15 C -0.151 4.151 16 C -0.048 4.048 17 C -0.118 4.118 18 C -0.136 4.136 19 C -0.133 4.133 20 C -0.131 4.131 21 C -0.043 4.043 22 Cl -0.033 7.033 23 H 0.078 0.922 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.100 0.900 27 H 0.082 0.918 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.116 0.884 32 H 0.119 0.881 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.643 -4.459 16.791 17.983 hybrid contribution 1.088 -0.236 -0.571 1.251 sum -3.555 -4.695 16.220 17.256 Atomic orbital electron populations 1.22227 0.96872 1.01373 1.02269 1.21416 0.93433 0.84367 1.02680 1.48215 1.64012 1.13166 1.07624 1.19251 0.96223 0.93598 0.78111 1.21477 0.96922 1.31569 1.06020 0.92444 1.24919 0.97720 0.95006 0.96461 1.69944 1.35525 1.33737 1.14329 0.86482 0.84870 0.78061 0.78269 1.19832 1.20994 1.20902 1.19963 0.78765 0.86953 0.84537 1.90690 1.45102 1.17916 1.87003 1.20862 1.03766 0.98595 0.91883 1.19287 0.91580 0.98066 0.95878 1.20961 0.98711 0.96468 0.95706 1.21139 0.96676 0.98470 0.97343 1.21031 0.92541 0.99644 1.00105 1.20998 1.00230 0.96477 0.95393 1.20802 0.89169 0.98428 0.95939 1.98387 1.50451 1.76238 1.78210 0.92187 0.93132 0.92038 0.89962 0.91788 0.95099 0.93968 0.92861 0.88448 0.88141 0.85386 0.85648 0.85463 0.85196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 10.24 37.16 0.38 -1.85 16 2 C 0.11 1.69 5.93 -4.05 -0.02 1.67 16 3 N -0.60 -12.72 2.46 -175.06 -0.43 -13.15 16 4 C 0.25 6.53 5.16 -5.19 -0.03 6.50 16 5 C -0.52 -15.00 9.39 -34.44 -0.32 -15.32 16 6 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -27.00 13.29 55.43 0.74 -26.27 16 9 Si 0.90 22.34 29.54 -169.99 -5.02 17.32 16 10 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 13 C 0.51 10.74 7.46 -10.98 -0.08 10.66 16 14 O -0.53 -13.55 15.54 5.56 0.09 -13.47 16 15 C -0.11 -1.72 3.85 -29.03 -0.11 -1.83 16 16 C -0.05 -0.72 4.42 -104.59 -0.46 -1.19 16 17 C -0.10 -1.31 9.67 -39.59 -0.38 -1.69 16 18 C -0.12 -1.35 10.05 -39.58 -0.40 -1.74 16 19 C -0.11 -1.31 10.05 -39.59 -0.40 -1.71 16 20 C -0.11 -1.50 9.83 -39.55 -0.39 -1.88 16 21 C -0.02 -0.26 6.21 -39.50 -0.25 -0.51 16 22 Cl -0.06 -1.04 27.34 -51.86 -1.42 -2.45 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.05 0.62 7.22 -51.93 -0.38 0.24 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 27 H 0.06 0.86 6.44 -51.93 -0.33 0.53 16 28 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 29 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 31 H 0.10 1.21 7.05 -51.93 -0.37 0.84 16 32 H 0.10 1.45 6.60 -51.93 -0.34 1.10 16 33 H 0.13 1.40 8.04 -52.48 -0.42 0.98 16 34 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 35 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.13 1.49 8.06 -52.48 -0.42 1.06 16 LS Contribution 322.67 15.07 4.86 4.86 Total: -1.00 -34.09 322.67 -8.47 -42.55 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -4.72 Total: -2.17 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -2.56 Total: -7.22 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.31 Total: -39.41 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.09 Total: -13.47 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.42 Total: -2.45 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.09 -8.47 -42.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454263.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.225 kcal (2) G-P(sol) polarization free energy of solvation -34.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds