Wall clock time and date at job start Tue Mar 31 2020 05:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53006 * 109.47291 * 2 1 4 4 N 1.46504 * 109.47281 * 120.00362 * 2 1 3 5 5 C 1.46493 * 119.99851 * 87.09486 * 4 2 1 6 6 C 1.50703 * 109.47358 * 90.00355 * 5 4 2 7 7 H 1.08001 * 119.99573 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99779 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00113 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99386 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47495 * 90.00131 * 10 8 6 12 12 H 1.48500 * 109.46912 * 209.99913 * 10 8 6 13 13 H 1.48501 * 109.47398 * 329.99666 * 10 8 6 14 14 C 1.34780 * 119.99505 * 267.09321 * 4 2 1 15 15 O 1.21552 * 119.99737 * 221.49930 * 14 4 2 16 16 C 1.47851 * 120.00027 * 41.50718 * 14 4 2 17 17 C 1.39593 * 120.13882 * 337.12545 * 16 14 4 18 18 C 1.37944 * 119.88163 * 179.76913 * 17 16 14 19 19 C 1.38356 * 120.15549 * 0.51422 * 18 17 16 20 20 C 1.38449 * 120.28284 * 359.74051 * 19 18 17 21 21 Cl 1.73599 * 119.94431 * 180.02562 * 20 19 18 22 22 C 1.38099 * 120.11704 * 359.97438 * 20 19 18 23 23 H 1.09001 * 109.47195 * 301.54984 * 1 2 3 24 24 H 1.09000 * 109.47416 * 61.54748 * 1 2 3 25 25 H 1.09002 * 109.47284 * 181.55008 * 1 2 3 26 26 H 1.09003 * 109.47473 * 240.00160 * 2 1 3 27 27 H 1.08994 * 109.46906 * 223.25489 * 3 2 1 28 28 H 1.08996 * 109.46783 * 343.25722 * 3 2 1 29 29 H 1.09003 * 109.46787 * 103.25544 * 3 2 1 30 30 H 1.08999 * 109.47578 * 329.99642 * 5 4 2 31 31 H 1.09002 * 109.46987 * 209.99783 * 5 4 2 32 32 H 0.97008 * 119.99774 * 180.02562 * 9 8 6 33 33 H 1.08002 * 120.05695 * 0.02562 * 17 16 14 34 34 H 1.07994 * 119.92307 * 180.23293 * 18 17 16 35 35 H 1.08001 * 119.85866 * 179.76772 * 19 18 17 36 36 H 1.08002 * 120.08357 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.2018 -2.1440 1.1791 6 6 3.6026 -2.4682 0.7277 7 1 4.2875 -1.6713 0.4780 8 6 4.0098 -3.7821 0.6335 9 7 3.1759 -4.7524 0.9380 10 14 5.7459 -4.1839 0.0732 11 1 6.6443 -4.2499 1.2538 12 1 5.7497 -5.4942 -0.6255 13 1 6.2239 -3.1271 -0.8541 14 6 2.2987 0.0111 2.3121 15 8 3.2907 -0.2532 2.9630 16 6 1.3996 1.1021 2.7448 17 6 0.5642 1.7304 1.8196 18 6 -0.2760 2.7445 2.2299 19 6 -0.2846 3.1471 3.5536 20 6 0.5450 2.5323 4.4758 21 17 0.5266 3.0440 6.1345 22 6 1.3865 1.5118 4.0786 23 1 -0.3633 0.5377 0.8758 24 1 -0.3634 0.4896 -0.9035 25 1 -0.3634 -1.0273 0.0278 26 1 1.8933 -0.5138 -0.8900 27 1 2.8667 1.5355 -0.7042 28 1 1.2333 2.1131 -0.2960 29 1 2.3832 1.7065 1.0003 30 1 1.4853 -2.5927 0.4911 31 1 2.0418 -2.5422 2.1811 32 1 3.4625 -5.6768 0.8720 33 1 0.5727 1.4201 0.7851 34 1 -0.9253 3.2285 1.5155 35 1 -0.9417 3.9442 3.8689 36 1 2.0332 1.0322 4.7986 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042530342.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:53 Heat of formation + Delta-G solvation = 66.373201 kcal Electronic energy + Delta-G solvation = -20165.163839 eV Core-core repulsion = 17064.843674 eV Total energy + Delta-G solvation = -3100.320165 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.98848 -38.11595 -36.81689 -36.24031 -33.40332 -31.70293 -31.15517 -30.08418 -27.52143 -26.83784 -24.00680 -23.03410 -22.29454 -21.59093 -18.57043 -17.52384 -16.50226 -16.17923 -15.86010 -15.41491 -14.89052 -14.68276 -14.08325 -13.93272 -13.76207 -13.23968 -13.11888 -12.84724 -12.31567 -12.16122 -12.03847 -11.66569 -11.38447 -11.21626 -11.14959 -11.08993 -10.97137 -10.80615 -10.61803 -10.10394 -9.80125 -9.62464 -9.20688 -9.00357 -8.56897 -8.41670 -7.56323 -6.02120 -4.05969 0.86480 1.18892 2.06039 2.99820 3.33784 3.39842 3.42897 3.76533 3.86874 4.47318 4.71816 4.75237 4.92301 4.99253 5.11374 5.13424 5.31420 5.33833 5.46693 5.62417 5.68849 5.76218 5.78507 5.84814 6.14539 6.15408 6.23192 6.30575 6.40448 6.46944 6.68523 7.05438 7.30681 7.61517 7.94734 8.23584 8.36392 8.74929 9.00468 9.58992 11.05303 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.023833 B = 0.004809 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.550116 B = 5820.638702 C = 6507.398295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.139 3.861 3 C -0.186 4.186 4 N -0.622 5.622 5 C 0.257 3.743 6 C -0.519 4.519 7 H 0.061 0.939 8 C 0.059 3.941 9 N -0.899 5.899 10 Si 0.898 3.102 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.274 1.274 14 C 0.567 3.433 15 O -0.500 6.500 16 C -0.122 4.122 17 C -0.146 4.146 18 C -0.131 4.131 19 C -0.095 4.095 20 C -0.051 4.051 21 Cl -0.075 7.075 22 C -0.059 4.059 23 H 0.091 0.909 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.096 0.904 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.037 0.963 31 H 0.030 0.970 32 H 0.262 0.738 33 H 0.216 0.784 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.916 15.939 0.610 18.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C 0.034 3.966 3 C -0.242 4.242 4 N -0.357 5.357 5 C 0.138 3.862 6 C -0.558 4.558 7 H 0.079 0.921 8 C -0.143 4.143 9 N -0.539 5.539 10 Si 0.725 3.275 11 H -0.206 1.206 12 H -0.213 1.213 13 H -0.199 1.199 14 C 0.354 3.646 15 O -0.374 6.374 16 C -0.126 4.126 17 C -0.162 4.162 18 C -0.149 4.149 19 C -0.114 4.114 20 C -0.077 4.077 21 Cl -0.046 7.046 22 C -0.079 4.079 23 H 0.109 0.891 24 H 0.084 0.916 25 H 0.088 0.912 26 H 0.114 0.886 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.231 0.769 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -9.366 15.600 1.124 18.230 hybrid contribution 0.842 -0.295 -0.001 0.892 sum -8.525 15.305 1.124 17.555 Atomic orbital electron populations 1.23274 0.96791 1.04209 1.02917 1.21004 0.92807 0.92486 0.90271 1.23014 1.01440 0.95994 1.03780 1.47846 1.68176 1.09821 1.09861 1.19228 0.96960 0.72055 0.97962 1.21513 0.97911 0.92001 1.44413 0.92124 1.24945 0.97611 0.96191 0.95513 1.69926 1.35262 0.99588 1.49135 0.86505 0.84714 0.77453 0.78782 1.20606 1.21283 1.19936 1.17960 0.83921 0.81017 0.81665 1.90750 1.24273 1.65552 1.56856 1.20575 0.99406 0.98883 0.93734 1.24481 0.92126 0.94059 1.05504 1.21096 1.00185 0.98444 0.95197 1.21182 0.97843 0.99454 0.92887 1.20739 1.01461 0.99657 0.85884 1.98359 1.98000 1.90329 1.17949 1.21186 0.96469 0.94206 0.96007 0.89150 0.91590 0.91207 0.88576 0.91884 0.90878 0.90647 0.94550 0.95153 0.92804 0.76864 0.84867 0.85128 0.84096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.66 8.59 37.15 0.32 -2.35 16 2 C 0.14 2.18 3.13 -67.93 -0.21 1.97 16 3 C -0.19 -2.43 7.92 37.16 0.29 -2.14 16 4 N -0.62 -12.90 2.42 -168.57 -0.41 -13.31 16 5 C 0.26 6.52 5.18 -5.20 -0.03 6.50 16 6 C -0.52 -14.67 9.25 -34.44 -0.32 -14.99 16 7 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 9 N -0.90 -26.47 13.29 55.43 0.74 -25.73 16 10 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 11 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 14 C 0.57 11.91 5.64 -12.33 -0.07 11.84 16 15 O -0.50 -12.61 16.91 5.32 0.09 -12.52 16 16 C -0.12 -2.01 5.11 -104.97 -0.54 -2.54 16 17 C -0.15 -1.86 4.51 -39.18 -0.18 -2.04 16 18 C -0.13 -1.36 10.03 -39.65 -0.40 -1.76 16 19 C -0.09 -1.04 9.82 -39.46 -0.39 -1.42 16 20 C -0.05 -0.67 6.31 -39.55 -0.25 -0.92 16 21 Cl -0.08 -0.91 28.95 -51.86 -1.50 -2.41 16 22 C -0.06 -0.92 9.37 -39.15 -0.37 -1.29 16 23 H 0.09 1.08 4.11 -53.95 -0.22 0.86 16 24 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.10 1.58 8.09 -51.93 -0.42 1.16 16 27 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.07 0.69 6.53 -51.93 -0.34 0.36 16 29 H 0.07 1.14 4.08 -51.93 -0.21 0.92 16 30 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 31 H 0.03 0.86 8.03 -51.93 -0.42 0.44 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 33 H 0.22 2.51 0.64 -100.27 -0.06 2.44 16 34 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 35 H 0.13 1.11 8.06 -52.49 -0.42 0.68 16 36 H 0.14 2.31 7.82 -52.49 -0.41 1.90 16 LS Contribution 306.80 15.07 4.62 4.62 Total: -1.00 -32.00 306.80 -7.87 -39.87 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -4.16 Total: 0.00 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -2.23 Total: -7.56 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.33 Total: -39.04 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.09 Total: -12.52 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.50 Total: -2.41 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.00 -7.87 -39.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530342.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.244 kcal (2) G-P(sol) polarization free energy of solvation -32.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds