Wall clock time and date at job start Tue Mar 31 2020 05:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46943 * 2 1 4 4 N 1.46499 * 109.47109 * 119.99687 * 2 1 3 5 5 C 1.46499 * 120.00235 * 294.11238 * 4 2 1 6 6 C 1.50697 * 109.47381 * 270.00146 * 5 4 2 7 7 H 1.08009 * 119.99957 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00622 * 179.97438 * 6 5 4 9 9 N 1.31522 * 119.99734 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00612 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47385 * 89.99916 * 10 8 6 12 12 H 1.48500 * 109.47301 * 210.00431 * 10 8 6 13 13 H 1.48506 * 109.46935 * 330.00238 * 10 8 6 14 14 C 1.34776 * 119.99691 * 114.11412 * 4 2 1 15 15 O 1.21561 * 119.99884 * 184.21177 * 14 4 2 16 16 C 1.47773 * 120.00175 * 4.21278 * 14 4 2 17 17 C 1.39620 * 120.15347 * 304.15403 * 16 14 4 18 18 C 1.37899 * 119.86338 * 179.97438 * 17 16 14 19 19 C 1.38423 * 120.18426 * 0.02562 * 18 17 16 20 20 C 1.38275 * 120.31570 * 0.02562 * 19 18 17 21 21 C 1.38160 * 120.12690 * 359.95122 * 20 19 18 22 22 Cl 1.73603 * 120.08706 * 179.97438 * 21 20 19 23 23 H 1.08999 * 109.46774 * 300.00120 * 1 2 3 24 24 H 1.09000 * 109.47130 * 59.99603 * 1 2 3 25 25 H 1.08996 * 109.46796 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47210 * 240.00179 * 2 1 3 27 27 H 1.08997 * 109.47263 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47039 * 300.00346 * 3 2 1 29 29 H 1.08999 * 109.47243 * 59.99568 * 3 2 1 30 30 H 1.09003 * 109.47255 * 30.00285 * 5 4 2 31 31 H 1.08999 * 109.47170 * 150.00416 * 5 4 2 32 32 H 0.96994 * 119.99952 * 179.97438 * 9 8 6 33 33 H 1.07994 * 120.07096 * 0.24714 * 17 16 14 34 34 H 1.07999 * 119.90677 * 179.97438 * 18 17 16 35 35 H 1.07993 * 119.84284 * 179.97438 * 19 18 17 36 36 H 1.07991 * 119.93395 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.7739 -0.1193 2.5229 6 6 2.9127 0.7954 2.8937 7 1 3.7361 0.9374 2.2093 8 6 2.9031 1.4518 4.1061 9 7 1.9002 1.2793 4.9393 10 14 4.3150 2.5851 4.5660 11 1 4.0162 3.9628 4.0992 12 1 4.4868 2.5885 6.0410 13 1 5.5647 2.1048 3.9232 14 6 2.6926 -1.8513 1.0761 15 8 3.0310 -2.4634 2.0704 16 6 3.0205 -2.3801 -0.2643 17 6 2.0069 -2.5977 -1.1996 18 6 2.3197 -3.0908 -2.4488 19 6 3.6349 -3.3709 -2.7772 20 6 4.6445 -3.1593 -1.8564 21 6 4.3458 -2.6652 -0.6012 22 17 5.6141 -2.4005 0.5544 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 0.8427 0.4471 2.5087 31 1 1.6995 -0.9224 3.2562 32 1 1.8936 1.7408 5.7924 33 1 0.9806 -2.3761 -0.9468 34 1 1.5362 -3.2597 -3.1727 35 1 3.8736 -3.7573 -3.7570 36 1 5.6684 -3.3803 -2.1189 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042530345.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:55 Heat of formation + Delta-G solvation = -16.225046 kcal Electronic energy + Delta-G solvation = -20316.804807 eV Core-core repulsion = 17212.902913 eV Total energy + Delta-G solvation = -3103.901894 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.03318 -38.09116 -36.25884 -35.87678 -32.87103 -31.34349 -30.85416 -30.65696 -27.35982 -26.67730 -24.00768 -22.87690 -22.23011 -21.13923 -18.80241 -17.11650 -16.53852 -16.43145 -15.68434 -15.15343 -14.75713 -14.24724 -14.04652 -13.79821 -13.41114 -13.28589 -13.15231 -12.46461 -12.22479 -12.07685 -11.62913 -11.58498 -11.44911 -11.36235 -11.15807 -10.92201 -10.86005 -10.62205 -10.56940 -10.36488 -10.00450 -9.52538 -9.12429 -8.83466 -8.67326 -8.39336 -7.65106 -6.00960 -4.03805 0.98528 1.14769 2.32881 3.26157 3.31804 3.38965 3.43562 3.60967 3.94968 4.47192 4.71166 4.79738 4.86919 5.17904 5.26554 5.30284 5.33605 5.49969 5.55516 5.69134 5.75716 5.99393 6.06802 6.13298 6.20728 6.27084 6.27963 6.38373 6.61676 6.66301 6.98862 7.10853 7.48334 7.56770 7.96129 8.27417 8.40505 8.91362 9.07248 9.60107 11.07328 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.018898 B = 0.006623 C = 0.005566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.276538 B = 4226.821581 C = 5029.746573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.124 3.876 3 C -0.154 4.154 4 N -0.582 5.582 5 C 0.247 3.753 6 C -0.517 4.517 7 H 0.059 0.941 8 C 0.061 3.939 9 N -0.896 5.896 10 Si 0.893 3.107 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.274 1.274 14 C 0.546 3.454 15 O -0.521 6.521 16 C -0.103 4.103 17 C -0.084 4.084 18 C -0.124 4.124 19 C -0.101 4.101 20 C -0.118 4.118 21 C 0.000 4.000 22 Cl -0.045 7.045 23 H 0.068 0.932 24 H 0.060 0.940 25 H 0.051 0.949 26 H 0.080 0.920 27 H 0.056 0.944 28 H 0.048 0.952 29 H 0.080 0.920 30 H 0.035 0.965 31 H 0.044 0.956 32 H 0.262 0.738 33 H 0.136 0.864 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.105 -5.852 -17.359 18.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.020 3.980 3 C -0.211 4.211 4 N -0.313 5.313 5 C 0.128 3.872 6 C -0.556 4.556 7 H 0.077 0.923 8 C -0.141 4.141 9 N -0.535 5.535 10 Si 0.721 3.279 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.199 1.199 14 C 0.331 3.669 15 O -0.397 6.397 16 C -0.107 4.107 17 C -0.103 4.103 18 C -0.142 4.142 19 C -0.119 4.119 20 C -0.137 4.137 21 C -0.028 4.028 22 Cl -0.015 7.015 23 H 0.087 0.913 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.098 0.902 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.099 0.901 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.154 0.846 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.108 -6.068 -16.492 17.573 hybrid contribution 0.887 0.755 0.382 1.226 sum 0.995 -5.312 -16.111 16.993 Atomic orbital electron populations 1.22197 0.95675 1.01597 1.02581 1.21202 0.93878 0.94552 0.88412 1.22092 1.01650 0.95296 1.02108 1.48259 1.53108 1.20779 1.09150 1.19273 0.96682 0.94085 0.77131 1.21426 1.06218 1.25653 1.02305 0.92312 1.24901 0.96029 0.97037 0.96088 1.69931 1.30920 1.43159 1.09485 0.86570 0.82857 0.80802 0.77677 1.20680 1.21169 1.19916 1.17984 0.79500 0.81982 0.87401 1.90791 1.52653 1.58391 1.37889 1.20232 0.92512 1.01601 0.96346 1.21357 0.98999 0.97397 0.92560 1.21145 0.96783 0.99691 0.96567 1.21182 0.92484 0.99051 0.99182 1.21013 1.00576 1.00417 0.91700 1.21003 0.89304 1.00738 0.91740 1.98423 1.49753 1.94576 1.58781 0.91313 0.92099 0.93023 0.90207 0.92527 0.93330 0.90148 0.94683 0.93827 0.92820 0.84582 0.85104 0.85076 0.84714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.05 37.16 0.34 -1.97 16 2 C 0.12 2.07 2.52 -67.93 -0.17 1.90 16 3 C -0.15 -2.62 8.34 37.16 0.31 -2.31 16 4 N -0.58 -12.42 2.38 -168.60 -0.40 -12.82 16 5 C 0.25 6.37 4.47 -5.20 -0.02 6.35 16 6 C -0.52 -14.41 7.85 -34.44 -0.27 -14.68 16 7 H 0.06 1.66 7.52 -52.48 -0.39 1.26 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 9 N -0.90 -26.48 13.29 55.43 0.74 -25.75 16 10 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 14 C 0.55 11.90 6.55 -12.36 -0.08 11.82 16 15 O -0.52 -13.52 15.82 5.31 0.08 -13.44 16 16 C -0.10 -1.77 4.81 -104.94 -0.50 -2.27 16 17 C -0.08 -1.12 7.44 -39.19 -0.29 -1.41 16 18 C -0.12 -1.26 10.03 -39.64 -0.40 -1.66 16 19 C -0.10 -0.99 10.04 -39.50 -0.40 -1.39 16 20 C -0.12 -1.43 9.82 -39.60 -0.39 -1.82 16 21 C 0.00 0.00 6.35 -39.07 -0.25 -0.25 16 22 Cl -0.04 -0.81 27.44 -51.86 -1.42 -2.23 16 23 H 0.07 1.10 6.91 -51.93 -0.36 0.75 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.05 0.68 7.26 -51.93 -0.38 0.30 16 26 H 0.08 1.19 4.67 -51.93 -0.24 0.94 16 27 H 0.06 1.04 7.95 -51.93 -0.41 0.63 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 1.58 6.94 -51.93 -0.36 1.22 16 30 H 0.04 0.91 6.72 -51.93 -0.35 0.56 16 31 H 0.04 1.29 7.37 -51.93 -0.38 0.90 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.14 1.64 6.40 -52.49 -0.34 1.31 16 34 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 35 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 36 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 312.99 15.07 4.72 4.72 Total: -1.00 -32.66 312.99 -7.99 -40.65 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -4.46 Total: -2.07 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -2.22 Total: -6.06 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.33 Total: -38.57 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.08 Total: -13.44 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.42 Total: -2.23 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.66 -7.99 -40.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530345.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.424 kcal (2) G-P(sol) polarization free energy of solvation -32.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds