Wall clock time and date at job start Tue Mar 31 2020 05:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47228 * 2 1 4 4 N 1.46497 * 109.47375 * 120.00234 * 2 1 3 5 5 C 1.46506 * 120.00142 * 121.55592 * 4 2 1 6 6 C 1.50695 * 109.46918 * 270.00220 * 5 4 2 7 7 H 1.07997 * 120.00475 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00001 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99485 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00300 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46856 * 59.99966 * 10 8 6 12 12 H 1.48495 * 109.47189 * 179.97438 * 10 8 6 13 13 H 1.48492 * 109.47012 * 299.99956 * 10 8 6 14 14 C 1.34773 * 120.00136 * 301.55735 * 4 2 1 15 15 O 1.21566 * 120.00104 * 212.40019 * 14 4 2 16 16 C 1.47787 * 120.00025 * 32.39586 * 14 4 2 17 17 C 1.39607 * 120.13120 * 137.46709 * 16 14 4 18 18 C 1.37898 * 119.86773 * 180.29967 * 17 16 14 19 19 C 1.38515 * 120.12927 * 359.46726 * 18 17 16 20 20 Cl 1.73599 * 119.86515 * 180.25518 * 19 18 17 21 21 C 1.38511 * 120.26236 * 0.51240 * 19 18 17 22 22 C 1.37889 * 120.13395 * 359.76653 * 21 19 18 23 23 H 1.08999 * 109.46448 * 253.46517 * 1 2 3 24 24 H 1.08996 * 109.47116 * 13.46381 * 1 2 3 25 25 H 1.08998 * 109.47209 * 133.47244 * 1 2 3 26 26 H 1.09002 * 109.46691 * 240.00071 * 2 1 3 27 27 H 1.09001 * 109.46945 * 223.72344 * 3 2 1 28 28 H 1.09005 * 109.46954 * 343.71570 * 3 2 1 29 29 H 1.08997 * 109.46811 * 103.71362 * 3 2 1 30 30 H 1.09003 * 109.47029 * 29.99635 * 5 4 2 31 31 H 1.08992 * 109.47082 * 149.99798 * 5 4 2 32 32 H 0.96999 * 119.99362 * 180.02562 * 9 8 6 33 33 H 1.08002 * 120.06944 * 0.02562 * 17 16 14 34 34 H 1.08007 * 119.93487 * 179.71671 * 18 17 16 35 35 H 1.07995 * 119.92918 * 179.74626 * 21 19 18 36 36 H 1.07995 * 120.06589 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.8886 -1.8616 1.0619 6 6 2.0455 -3.1087 0.9936 7 1 0.9692 -3.0365 1.0454 8 6 2.6483 -4.3422 0.8660 9 7 3.9590 -4.4302 0.8034 10 14 1.6033 -5.8883 0.7820 11 1 0.6959 -5.8093 -0.3910 12 1 2.4853 -7.0752 0.6459 13 1 0.7979 -6.0094 2.0236 14 6 1.6672 -0.2489 2.4200 15 8 2.4379 -0.3659 3.3528 16 6 0.3451 0.3780 2.6280 17 6 -0.4096 0.0630 3.7595 18 6 -1.6452 0.6464 3.9451 19 6 -2.1331 1.5517 3.0171 20 17 -3.6866 2.2871 3.2610 21 6 -1.3887 1.8685 1.8928 22 6 -0.1543 1.2872 1.6935 23 1 -0.3632 -0.2925 0.9852 24 1 -0.3633 0.9994 -0.2393 25 1 -0.3633 -0.7070 -0.7458 26 1 1.8933 -0.5138 -0.8900 27 1 2.8614 1.5374 -0.7103 28 1 1.2311 2.1139 -0.2882 29 1 2.3908 1.7038 0.9984 30 1 3.4798 -1.7723 0.1505 31 1 3.5546 -1.9199 1.9227 32 1 4.3830 -5.2979 0.7133 33 1 -0.0284 -0.6395 4.4859 34 1 -2.2320 0.4000 4.8178 35 1 -1.7761 2.5719 1.1707 36 1 0.4250 1.5346 0.8163 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042530346.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:57 Heat of formation + Delta-G solvation = 59.935694 kcal Electronic energy + Delta-G solvation = -20264.617072 eV Core-core repulsion = 17164.017756 eV Total energy + Delta-G solvation = -3100.599316 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.04356 -38.13227 -36.70004 -36.26250 -33.45408 -31.89934 -30.85136 -30.36303 -27.27223 -26.87939 -24.03326 -23.15273 -22.12480 -21.69542 -18.61708 -17.41311 -16.55003 -16.15507 -15.94678 -15.16173 -14.93803 -14.65714 -14.18770 -14.14647 -13.84448 -13.29949 -12.88194 -12.78728 -12.32825 -12.24323 -12.09974 -11.78991 -11.40652 -11.38804 -11.23065 -11.04745 -10.91176 -10.71444 -10.59938 -10.22327 -10.16400 -9.71999 -9.23909 -8.85358 -8.50085 -8.24525 -7.65623 -6.10668 -4.17439 0.91425 1.35886 2.04235 3.05266 3.27175 3.32143 3.34487 3.65958 3.88498 4.37897 4.74731 4.81865 4.88790 4.94126 5.16830 5.23152 5.26584 5.37937 5.47196 5.62480 5.71042 5.76835 5.80764 5.92881 6.11720 6.14205 6.22341 6.28966 6.39911 6.51368 6.72518 7.04049 7.36731 7.52705 7.86762 8.15383 8.31937 8.71916 8.92214 9.48601 10.96572 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.020319 B = 0.005139 C = 0.004712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.697215 B = 5447.593725 C = 5940.795464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.136 3.864 3 C -0.180 4.180 4 N -0.607 5.607 5 C 0.248 3.752 6 C -0.536 4.536 7 H 0.058 0.942 8 C 0.064 3.936 9 N -0.892 5.892 10 Si 0.897 3.103 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.570 3.430 15 O -0.528 6.528 16 C -0.140 4.140 17 C -0.050 4.050 18 C -0.136 4.136 19 C -0.010 4.010 20 Cl -0.079 7.079 21 C -0.155 4.155 22 C -0.077 4.077 23 H 0.095 0.905 24 H 0.070 0.930 25 H 0.060 0.940 26 H 0.099 0.901 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.033 0.967 31 H 0.045 0.955 32 H 0.265 0.735 33 H 0.138 0.862 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.094 13.330 -0.717 17.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.031 3.969 3 C -0.238 4.238 4 N -0.339 5.339 5 C 0.130 3.870 6 C -0.575 4.575 7 H 0.077 0.923 8 C -0.139 4.139 9 N -0.530 5.530 10 Si 0.725 3.275 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.202 1.202 14 C 0.358 3.642 15 O -0.405 6.405 16 C -0.144 4.144 17 C -0.069 4.069 18 C -0.155 4.155 19 C -0.037 4.037 20 Cl -0.050 7.050 21 C -0.174 4.174 22 C -0.094 4.094 23 H 0.113 0.887 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.117 0.883 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.156 0.844 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -10.619 13.162 -0.226 16.913 hybrid contribution -0.858 -1.035 -0.119 1.350 sum -11.477 12.127 -0.345 16.701 Atomic orbital electron populations 1.23739 0.96312 1.01450 1.04281 1.21034 0.93443 0.92290 0.90180 1.22730 1.01598 0.96159 1.03316 1.48030 1.51336 1.31430 1.03148 1.19355 0.89179 0.79942 0.98555 1.21476 0.93523 0.91100 1.51358 0.92349 1.24937 0.94984 0.99028 0.94959 1.69928 1.08430 1.25186 1.49473 0.86570 0.80078 0.82187 0.78685 1.20173 1.21103 1.20175 1.17961 0.85220 0.77595 0.83436 1.90722 1.51750 1.55091 1.42894 1.20454 0.97171 1.00350 0.96439 1.21152 0.92581 0.97568 0.95606 1.20884 0.96744 0.98065 0.99811 1.21083 0.87643 0.97766 0.97215 1.98357 1.28006 1.81952 1.96730 1.20841 0.95410 1.03226 0.97905 1.23012 0.96046 0.92356 0.97965 0.88732 0.91175 0.92143 0.88324 0.91298 0.91265 0.91620 0.94849 0.93668 0.92545 0.84404 0.84815 0.84830 0.80116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.76 7.72 37.16 0.29 -2.48 16 2 C 0.14 2.12 3.27 -67.93 -0.22 1.90 16 3 C -0.18 -2.22 8.36 37.16 0.31 -1.91 16 4 N -0.61 -12.54 2.38 -168.60 -0.40 -12.94 16 5 C 0.25 6.32 5.32 -5.19 -0.03 6.29 16 6 C -0.54 -14.62 9.39 -34.44 -0.32 -14.95 16 7 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -25.87 13.29 55.43 0.74 -25.13 16 10 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 C 0.57 11.92 5.86 -12.36 -0.07 11.85 16 15 O -0.53 -12.98 16.79 5.31 0.09 -12.89 16 16 C -0.14 -2.35 4.26 -104.97 -0.45 -2.80 16 17 C -0.05 -0.78 9.66 -39.20 -0.38 -1.16 16 18 C -0.14 -1.78 9.81 -39.60 -0.39 -2.17 16 19 C -0.01 -0.13 6.33 -39.38 -0.25 -0.38 16 20 Cl -0.08 -0.87 28.95 -51.86 -1.50 -2.37 16 21 C -0.16 -1.82 9.56 -39.61 -0.38 -2.20 16 22 C -0.08 -1.02 4.87 -39.19 -0.19 -1.21 16 23 H 0.09 1.49 3.99 -61.49 -0.25 1.25 16 24 H 0.07 0.73 5.24 -51.93 -0.27 0.46 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.10 1.57 7.81 -51.93 -0.41 1.17 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 0.63 6.18 -51.93 -0.32 0.31 16 29 H 0.06 0.92 6.82 -51.93 -0.35 0.56 16 30 H 0.03 0.86 7.93 -51.93 -0.41 0.45 16 31 H 0.05 1.30 7.36 -51.93 -0.38 0.92 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.14 2.17 8.06 -52.49 -0.42 1.74 16 34 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 35 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.18 2.15 1.07 -53.69 -0.06 2.09 16 LS Contribution 305.11 15.07 4.60 4.60 Total: -1.00 -30.97 305.11 -7.79 -38.75 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -4.11 Total: 1.26 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -2.18 Total: -7.53 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.34 Total: -38.07 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.09 Total: -12.89 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.50 Total: -2.37 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.97 -7.79 -38.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530346.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.690 kcal (2) G-P(sol) polarization free energy of solvation -30.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds