Wall clock time and date at job start Tue Mar 31 2020 05:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.46836 * 2 1 4 4 S 1.80998 * 109.47627 * 239.99832 * 2 1 3 5 5 C 1.76207 * 99.99739 * 65.00050 * 4 2 1 6 6 N 1.32554 * 119.22546 * 359.72818 * 5 4 2 7 7 C 1.32257 * 120.73507 * 179.71554 * 6 5 4 8 8 C 1.38619 * 119.20161 * 0.55045 * 7 6 5 9 9 C 1.38622 * 118.57095 * 359.73229 * 8 7 6 10 10 N 1.32256 * 119.20492 * 359.97438 * 9 8 7 11 11 C 1.50706 * 109.47010 * 119.99377 * 2 1 3 12 12 O 1.21281 * 119.99660 * 100.00312 * 11 2 1 13 13 N 1.34771 * 120.00094 * 280.00597 * 11 2 1 14 14 C 1.46501 * 120.00308 * 359.97438 * 13 11 2 15 15 C 1.46506 * 119.99594 * 179.97438 * 13 11 2 16 16 C 1.50699 * 109.46928 * 90.00049 * 15 13 11 17 17 H 1.08003 * 119.99963 * 0.02562 * 16 15 13 18 18 C 1.37873 * 119.99865 * 179.97438 * 16 15 13 19 19 N 1.31514 * 120.00518 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99987 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46948 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47174 * 120.00320 * 20 18 16 23 23 H 1.48497 * 109.47378 * 240.00235 * 20 18 16 24 24 H 1.08997 * 109.47089 * 300.00308 * 1 2 3 25 25 H 1.09002 * 109.46835 * 60.00201 * 1 2 3 26 26 H 1.09006 * 109.46836 * 179.97438 * 1 2 3 27 27 H 1.08002 * 120.40032 * 180.27924 * 7 6 5 28 28 H 1.08004 * 120.71416 * 179.70211 * 8 7 6 29 29 H 1.08001 * 120.40254 * 180.02562 * 9 8 7 30 30 H 1.08999 * 109.46532 * 269.99942 * 14 13 11 31 31 H 1.09000 * 109.46877 * 29.99967 * 14 13 11 32 32 H 1.09000 * 109.47251 * 150.00072 * 14 13 11 33 33 H 1.09004 * 109.47073 * 209.99877 * 15 13 11 34 34 H 1.09000 * 109.47212 * 329.99960 * 15 13 11 35 35 H 0.96992 * 120.00316 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1335 -0.8532 -1.4778 5 6 1.5441 0.2423 -2.7257 6 7 0.8631 1.3223 -2.3697 7 6 0.4117 2.1677 -3.2812 8 6 0.6486 1.9068 -4.6218 9 6 1.3591 0.7654 -4.9596 10 7 1.7878 -0.0358 -3.9987 11 6 2.0324 -0.7103 1.2306 12 8 2.4065 -1.8616 1.1559 13 7 2.0658 -0.0662 2.4140 14 6 1.6143 1.3246 2.5041 15 6 2.5536 -0.7570 3.6103 16 6 4.0403 -0.5474 3.7402 17 1 4.5688 0.0418 3.0054 18 6 4.7255 -1.1070 4.7977 19 7 4.0819 -1.8240 5.6928 20 14 6.5685 -0.8478 4.9584 21 1 7.0507 -0.0103 3.8309 22 1 6.8619 -0.1637 6.2434 23 1 7.2578 -2.1627 4.9291 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.1388 3.0484 -2.9848 28 1 0.2870 2.5780 -5.3867 29 1 1.5609 0.5336 -5.9950 30 1 2.4568 1.9923 2.3237 31 1 0.8414 1.5047 1.7570 32 1 1.2091 1.5113 3.4985 33 1 2.0518 -0.3564 4.4912 34 1 2.3430 -1.8231 3.5256 35 1 4.5640 -2.2180 6.4365 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052421697.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:58 Heat of formation + Delta-G solvation = 23.870152 kcal Electronic energy + Delta-G solvation = -19311.444323 eV Core-core repulsion = 16243.617545 eV Total energy + Delta-G solvation = -3067.826778 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.93665 -39.17395 -34.92683 -34.14586 -33.20571 -32.39656 -31.90601 -27.78561 -26.04000 -24.82082 -24.70814 -24.39864 -22.41655 -19.28344 -18.18144 -17.59210 -16.71980 -16.44659 -16.16635 -15.60104 -15.18235 -14.84017 -14.63696 -14.19731 -13.88517 -13.78791 -13.19993 -12.96183 -12.43588 -12.15005 -11.94532 -11.80443 -11.71522 -11.21950 -11.08068 -10.93325 -10.84043 -10.60028 -10.36952 -10.19675 -10.15073 -9.63359 -9.45135 -9.04594 -8.44336 -7.78137 -7.66861 -6.05282 -4.09952 0.57341 0.87843 1.20000 2.10084 3.27270 3.30614 3.38543 3.43135 3.47000 3.85302 3.99322 4.32900 4.44682 4.47774 4.84797 4.88390 4.89363 5.03758 5.23118 5.29918 5.48987 5.52624 5.74446 5.84982 5.92692 6.00507 6.13867 6.27778 6.70304 6.96582 7.38672 7.46990 7.68476 7.90508 8.20695 8.27948 8.82078 8.98465 9.55165 11.02972 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.030024 B = 0.003996 C = 0.003852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.351103 B = 7005.691411 C = 7268.098988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 H 0.118 0.882 4 S 0.089 5.911 5 C 0.284 3.716 6 N -0.525 5.525 7 C 0.161 3.839 8 C -0.248 4.248 9 C 0.162 3.838 10 N -0.505 5.505 11 C 0.524 3.476 12 O -0.527 6.527 13 N -0.592 5.592 14 C 0.077 3.923 15 C 0.246 3.754 16 C -0.527 4.527 17 H 0.058 0.942 18 C 0.061 3.939 19 N -0.895 5.895 20 Si 0.898 3.102 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.282 1.282 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.066 0.934 27 H 0.169 0.831 28 H 0.146 0.854 29 H 0.170 0.830 30 H 0.051 0.949 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.035 0.965 34 H 0.046 0.954 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.197 10.640 -17.941 23.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.248 4.248 3 H 0.136 0.864 4 S 0.326 5.674 5 C -0.090 4.090 6 N -0.243 5.243 7 C -0.008 4.008 8 C -0.275 4.275 9 C -0.007 4.007 10 N -0.222 5.222 11 C 0.308 3.692 12 O -0.404 6.404 13 N -0.323 5.323 14 C -0.067 4.067 15 C 0.127 3.873 16 C -0.566 4.566 17 H 0.077 0.923 18 C -0.141 4.141 19 N -0.534 5.534 20 Si 0.726 3.274 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.208 1.208 24 H 0.090 0.910 25 H 0.101 0.899 26 H 0.085 0.915 27 H 0.186 0.814 28 H 0.164 0.836 29 H 0.187 0.813 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.962 8.194 -17.038 20.922 hybrid contribution 0.004 2.193 -0.478 2.245 sum -8.957 10.387 -17.516 22.247 Atomic orbital electron populations 1.22056 0.90529 1.03428 1.03955 1.23691 1.01803 1.04301 0.95007 0.86374 1.86742 1.64927 1.24211 0.91518 1.25661 0.93604 0.94443 0.95287 1.68913 1.12748 1.04349 1.38292 1.23238 0.92076 0.96193 0.89307 1.22758 1.04646 1.01208 0.98865 1.23266 0.89313 0.88989 0.99157 1.68559 1.21976 1.31892 0.99749 1.19390 0.79455 0.86797 0.83594 1.90719 1.48030 1.17075 1.84566 1.48038 1.62015 1.12679 1.09613 1.21803 0.98985 0.83426 1.02453 1.19385 0.94388 0.93754 0.79805 1.21457 0.92996 1.32661 1.09465 0.92340 1.24930 0.98720 0.94862 0.95557 1.69935 1.36050 1.33911 1.13468 0.86432 0.85074 0.78077 0.77800 1.19763 1.20960 1.20792 0.90978 0.89876 0.91544 0.81373 0.83623 0.81294 0.92996 0.91979 0.91031 0.94690 0.93640 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.67 37.16 0.32 -1.58 16 2 C -0.12 -1.87 1.70 -27.88 -0.05 -1.92 16 3 H 0.12 1.79 7.02 -51.91 -0.36 1.42 16 4 S 0.09 1.49 20.94 -107.50 -2.25 -0.76 16 5 C 0.28 4.10 7.66 -90.84 -0.70 3.40 16 6 N -0.52 -6.49 6.84 -13.44 -0.09 -6.58 16 7 C 0.16 1.40 11.30 -17.23 -0.19 1.21 16 8 C -0.25 -1.82 10.16 -39.30 -0.40 -2.22 16 9 C 0.16 1.50 11.30 -17.23 -0.19 1.30 16 10 N -0.50 -6.83 10.40 -13.44 -0.14 -6.97 16 11 C 0.52 11.12 6.85 -10.99 -0.08 11.04 16 12 O -0.53 -13.42 15.62 5.56 0.09 -13.34 16 13 N -0.59 -12.59 2.86 -182.95 -0.52 -13.12 16 14 C 0.08 1.22 9.93 59.85 0.59 1.81 16 15 C 0.25 6.43 5.20 -5.19 -0.03 6.40 16 16 C -0.53 -15.06 9.39 -34.44 -0.32 -15.38 16 17 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 18 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 19 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 20 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 21 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 24 H 0.07 0.87 6.33 -51.93 -0.33 0.55 16 25 H 0.08 1.03 5.62 -51.93 -0.29 0.74 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.17 0.87 8.06 -52.49 -0.42 0.45 16 28 H 0.15 0.55 8.06 -52.48 -0.42 0.13 16 29 H 0.17 0.95 8.06 -52.49 -0.42 0.52 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.78 4.76 -51.93 -0.25 0.53 16 32 H 0.07 1.07 7.89 -51.93 -0.41 0.66 16 33 H 0.04 0.91 7.89 -51.93 -0.41 0.50 16 34 H 0.05 1.34 7.42 -51.93 -0.39 0.95 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 311.96 15.07 4.70 4.70 Total: -1.00 -34.92 311.96 -7.74 -42.66 By element: Atomic # 1 Polarization: 0.63 SS G_CDS: -4.10 Total: -3.47 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: -1.14 Total: 5.75 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: -0.02 Total: -52.58 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.09 Total: -13.34 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Atomic # 16 Polarization: 1.49 SS G_CDS: -2.25 Total: -0.76 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.92 -7.74 -42.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052421697.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.525 kcal (2) G-P(sol) polarization free energy of solvation -34.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds