Wall clock time and date at job start Tue Mar 31 2020 05:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 S 1.81003 * 109.47194 * 119.99905 * 2 1 3 5 5 C 1.76206 * 99.99950 * 295.00093 * 4 2 1 6 6 N 1.32558 * 119.21996 * 359.73190 * 5 4 2 7 7 C 1.32264 * 120.73343 * 179.71956 * 6 5 4 8 8 C 1.38624 * 119.20054 * 0.53999 * 7 6 5 9 9 C 1.38622 * 118.57093 * 359.73497 * 8 7 6 10 10 N 1.32260 * 119.20249 * 359.97438 * 9 8 7 11 11 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 12 12 O 1.21281 * 120.00351 * 265.00197 * 11 2 1 13 13 N 1.34780 * 119.99926 * 85.00009 * 11 2 1 14 14 C 1.46501 * 119.99828 * 0.02562 * 13 11 2 15 15 C 1.46497 * 120.00174 * 180.02562 * 13 11 2 16 16 C 1.50694 * 109.47531 * 89.99566 * 15 13 11 17 17 H 1.08001 * 119.99999 * 0.02562 * 16 15 13 18 18 C 1.37877 * 120.00118 * 180.02562 * 16 15 13 19 19 N 1.31518 * 119.99784 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99978 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.46636 * 90.00432 * 20 18 16 22 22 H 1.48496 * 109.46752 * 209.99861 * 20 18 16 23 23 H 1.48490 * 109.46968 * 330.00292 * 20 18 16 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 27 27 H 1.07990 * 120.40140 * 180.26882 * 7 6 5 28 28 H 1.07997 * 120.71570 * 179.70604 * 8 7 6 29 29 H 1.08000 * 120.40035 * 180.02562 * 9 8 7 30 30 H 1.08991 * 109.47235 * 90.00295 * 14 13 11 31 31 H 1.09001 * 109.46765 * 210.00507 * 14 13 11 32 32 H 1.09005 * 109.47086 * 329.99568 * 14 13 11 33 33 H 1.09002 * 109.47034 * 210.00491 * 15 13 11 34 34 H 1.09010 * 109.46891 * 329.99539 * 15 13 11 35 35 H 0.97000 * 119.99950 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1333 -0.8532 1.4779 5 6 1.5439 0.2423 2.7258 6 7 0.8722 1.3280 2.3690 7 6 0.4114 2.1679 3.2810 8 6 0.6482 1.9070 4.6217 9 6 1.3587 0.7657 4.9596 10 7 1.7868 -0.0361 3.9988 11 6 2.0324 -0.7104 -1.2304 12 8 2.3208 -1.8872 -1.1759 13 7 2.1611 -0.0381 -2.3914 14 6 1.8132 1.3835 -2.4571 15 6 2.6490 -0.7288 -3.5877 16 6 1.4818 -1.3084 -4.3443 17 1 0.4769 -1.1752 -3.9716 18 6 1.6967 -2.0087 -5.5123 19 7 0.6779 -2.5141 -6.1729 20 14 3.4348 -2.2397 -6.1566 21 1 4.0091 -3.4884 -5.5944 22 1 3.4052 -2.3318 -7.6384 23 1 4.2715 -1.0827 -5.7490 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 -0.1389 3.0485 2.9846 28 1 0.2873 2.5786 5.3865 29 1 1.5597 0.5335 5.9951 30 1 2.6922 1.9839 -2.2228 31 1 1.4644 1.6261 -3.4608 32 1 1.0239 1.5981 -1.7365 33 1 3.1798 -0.0212 -4.2246 34 1 3.3257 -1.5311 -3.2933 35 1 0.8290 -3.0065 -6.9949 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052421699.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:59 Heat of formation + Delta-G solvation = 27.497718 kcal Electronic energy + Delta-G solvation = -19338.630543 eV Core-core repulsion = 16270.961068 eV Total energy + Delta-G solvation = -3067.669475 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.96956 -39.28108 -35.04471 -34.17193 -33.17517 -32.40336 -31.95700 -28.45115 -26.13476 -24.84869 -24.74182 -24.36333 -22.12130 -19.28125 -18.21303 -17.63013 -16.98795 -16.71447 -16.22114 -15.62432 -15.21240 -14.84064 -14.78356 -14.09661 -13.97838 -13.76285 -13.29361 -12.97913 -12.38729 -12.34767 -12.06400 -11.94538 -11.78446 -11.48388 -11.12876 -11.01093 -10.87328 -10.54205 -10.39969 -10.23040 -10.17075 -9.57032 -9.48103 -9.15417 -8.60194 -7.83235 -7.74600 -6.10056 -4.09402 0.54063 0.84815 1.14115 2.03494 3.17391 3.29022 3.34901 3.37098 3.43862 3.76029 3.96021 4.30540 4.38641 4.44466 4.79445 4.83495 4.85532 5.01738 5.20903 5.24611 5.46547 5.53226 5.79260 5.79892 5.89734 5.99962 6.11897 6.33322 6.62671 6.67241 6.88926 7.22988 7.57645 7.65017 8.09100 8.43224 8.77840 8.93333 9.49571 11.03187 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.040695 B = 0.003882 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.871803 B = 7211.212296 C = 7428.137979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.112 4.112 3 H 0.118 0.882 4 S 0.082 5.918 5 C 0.286 3.714 6 N -0.524 5.524 7 C 0.161 3.839 8 C -0.247 4.247 9 C 0.162 3.838 10 N -0.505 5.505 11 C 0.526 3.474 12 O -0.525 6.525 13 N -0.587 5.587 14 C 0.077 3.923 15 C 0.216 3.784 16 C -0.531 4.531 17 H 0.075 0.925 18 C 0.073 3.927 19 N -0.896 5.896 20 Si 0.876 3.124 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.266 1.266 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.170 0.830 28 H 0.146 0.854 29 H 0.170 0.830 30 H 0.047 0.953 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.033 0.967 34 H 0.038 0.962 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.037 13.140 19.836 23.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.245 4.245 3 H 0.136 0.864 4 S 0.319 5.681 5 C -0.089 4.089 6 N -0.242 5.242 7 C -0.008 4.008 8 C -0.273 4.273 9 C -0.007 4.007 10 N -0.222 5.222 11 C 0.310 3.690 12 O -0.402 6.402 13 N -0.319 5.319 14 C -0.067 4.067 15 C 0.095 3.905 16 C -0.569 4.569 17 H 0.093 0.907 18 C -0.130 4.130 19 N -0.534 5.534 20 Si 0.703 3.297 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.190 1.190 24 H 0.087 0.913 25 H 0.092 0.908 26 H 0.100 0.900 27 H 0.187 0.813 28 H 0.164 0.836 29 H 0.187 0.813 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.169 10.689 18.930 21.771 hybrid contribution -0.376 1.817 0.187 1.865 sum 0.793 12.506 19.117 22.858 Atomic orbital electron populations 1.22003 0.90112 1.03814 1.03911 1.23661 1.02286 1.03918 0.94605 0.86410 1.86619 1.64964 1.24739 0.91777 1.25562 0.93817 0.94299 0.95178 1.68919 1.12647 1.04299 1.38328 1.23250 0.91965 0.96271 0.89281 1.22771 1.04515 1.01160 0.98884 1.23268 0.89361 0.88959 0.99145 1.68548 1.21978 1.31904 0.99738 1.19429 0.79074 0.86965 0.83531 1.90720 1.49925 1.15089 1.84473 1.47721 1.64046 1.10093 1.10047 1.21803 0.99593 0.81607 1.03720 1.19736 0.96096 0.92941 0.81686 1.21305 0.93990 1.34537 1.07083 0.90663 1.24854 0.96972 0.94757 0.96374 1.69895 1.30384 1.36110 1.17060 0.86849 0.85181 0.79494 0.78182 1.19815 1.21033 1.19045 0.91274 0.90849 0.89983 0.81311 0.83574 0.81262 0.93399 0.90164 0.91670 0.94896 0.94359 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.72 37.16 0.32 -1.73 16 2 C -0.11 -1.79 1.70 -27.89 -0.05 -1.84 16 3 H 0.12 1.66 6.72 -51.92 -0.35 1.31 16 4 S 0.08 1.32 21.00 -107.50 -2.26 -0.94 16 5 C 0.29 4.00 7.65 -90.84 -0.69 3.30 16 6 N -0.52 -6.34 6.86 -13.44 -0.09 -6.43 16 7 C 0.16 1.37 11.30 -17.22 -0.19 1.18 16 8 C -0.25 -1.74 10.16 -39.30 -0.40 -2.14 16 9 C 0.16 1.44 11.30 -17.23 -0.19 1.24 16 10 N -0.50 -6.59 10.40 -13.44 -0.14 -6.73 16 11 C 0.53 10.91 6.79 -10.99 -0.07 10.84 16 12 O -0.53 -13.07 15.71 5.56 0.09 -12.98 16 13 N -0.59 -12.11 2.86 -182.96 -0.52 -12.64 16 14 C 0.08 1.17 9.87 59.85 0.59 1.76 16 15 C 0.22 5.27 4.23 -5.20 -0.02 5.25 16 16 C -0.53 -15.19 9.94 -34.44 -0.34 -15.53 16 17 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 18 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 19 N -0.90 -27.60 13.96 55.43 0.77 -26.82 16 20 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 21 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 24 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.07 1.04 6.84 -51.93 -0.36 0.68 16 26 H 0.08 1.08 5.65 -51.93 -0.29 0.79 16 27 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 28 H 0.15 0.52 8.06 -52.49 -0.42 0.09 16 29 H 0.17 0.89 8.06 -52.49 -0.42 0.46 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 32 H 0.06 0.85 5.17 -51.93 -0.27 0.58 16 33 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 34 H 0.04 1.00 6.85 -51.92 -0.36 0.64 16 35 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 309.40 15.07 4.66 4.66 Total: -1.00 -35.51 309.40 -7.43 -42.93 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: -4.11 Total: -2.28 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -1.15 Total: 4.35 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: 0.02 Total: -52.62 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.09 Total: -12.98 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -2.26 Total: -0.94 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -35.51 -7.43 -42.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052421699.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.433 kcal (2) G-P(sol) polarization free energy of solvation -35.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds