Wall clock time and date at job start Tue Mar 31 2020 05:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46492 * 109.46932 * 2 1 4 4 C 1.46510 * 119.99858 * 85.54922 * 3 2 1 5 5 C 1.50699 * 109.46894 * 82.68809 * 4 3 2 6 6 H 1.08001 * 120.00220 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00128 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99702 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00181 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47203 * 90.00285 * 9 7 5 11 11 H 1.48502 * 109.47227 * 210.00144 * 9 7 5 12 12 H 1.48499 * 109.47399 * 330.00394 * 9 7 5 13 13 C 1.34776 * 120.00417 * 265.54918 * 3 2 1 14 14 O 1.21552 * 119.99924 * 4.30580 * 13 3 2 15 15 C 1.47845 * 120.00201 * 184.30383 * 13 3 2 16 16 C 1.39599 * 120.13695 * 227.88734 * 15 13 3 17 17 C 1.37950 * 119.87649 * 179.78998 * 16 15 13 18 18 C 1.38358 * 120.15920 * 0.49160 * 17 16 15 19 19 C 1.50697 * 119.85676 * 179.72371 * 18 17 16 20 20 C 1.38446 * 120.27999 * 359.73618 * 18 17 16 21 21 Cl 1.73605 * 119.94073 * 180.02562 * 20 18 17 22 22 C 1.38103 * 120.12201 * 0.02568 * 20 18 17 23 23 H 1.09002 * 109.46979 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47001 * 299.99530 * 1 2 3 25 25 H 1.08997 * 109.46804 * 60.00165 * 1 2 3 26 26 H 1.09002 * 109.46997 * 239.99856 * 2 1 3 27 27 H 1.09003 * 109.46853 * 120.00547 * 2 1 3 28 28 H 1.08996 * 109.46794 * 202.68762 * 4 3 2 29 29 H 1.08992 * 109.46975 * 322.68902 * 4 3 2 30 30 H 0.96999 * 119.99607 * 179.97438 * 8 7 5 31 31 H 1.07998 * 120.05999 * 0.02562 * 16 15 13 32 32 H 1.07994 * 119.91641 * 180.20470 * 17 16 15 33 33 H 1.09004 * 109.46656 * 270.01246 * 19 18 17 34 34 H 1.08996 * 109.47816 * 30.01553 * 19 18 17 35 35 H 1.09004 * 109.47000 * 150.01980 * 19 18 17 36 36 H 1.07993 * 120.08237 * 179.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1697 2.1046 1.2650 5 6 3.4874 1.7390 1.8982 6 1 4.1465 1.0383 1.4073 7 6 3.8522 2.2999 3.1037 8 7 3.0498 3.1537 3.7013 9 14 5.4852 1.8462 3.8889 10 1 6.5378 2.7821 3.4182 11 1 5.3665 1.9376 5.3664 12 1 5.8498 0.4584 3.5065 13 6 2.3284 1.9864 -1.1636 14 8 2.1293 1.4149 -2.2178 15 6 2.9105 3.3454 -1.1579 16 6 2.3950 4.3323 -1.9999 17 6 2.9395 5.5997 -1.9871 18 6 4.0012 5.8917 -1.1494 19 6 4.5948 7.2768 -1.1454 20 6 4.5207 4.9166 -0.3151 21 17 5.8526 5.2928 0.7330 22 6 3.9814 3.6453 -0.3149 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 2.1430 3.1776 1.0753 29 1 1.3559 1.8342 1.9377 30 1 3.3063 3.5480 4.5496 31 1 1.5689 4.1050 -2.6574 32 1 2.5390 6.3646 -2.6358 33 1 5.3966 7.3306 -1.8820 34 1 3.8223 8.0040 -1.3955 35 1 4.9951 7.4977 -0.1559 36 1 4.3874 2.8851 0.3358 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063021679.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:53 Heat of formation + Delta-G solvation = -28.158201 kcal Electronic energy + Delta-G solvation = -20210.020251 eV Core-core repulsion = 17105.600897 eV Total energy + Delta-G solvation = -3104.419354 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.81009 -38.16280 -35.91806 -35.28999 -33.03902 -32.49386 -30.59268 -30.07733 -27.37947 -26.82659 -23.25357 -23.04052 -22.32528 -21.22046 -18.84911 -16.84386 -16.55976 -15.99669 -15.24289 -14.97890 -14.77385 -14.33926 -14.05320 -13.76054 -13.41103 -13.21212 -12.79520 -12.47313 -12.15625 -12.08935 -11.87084 -11.68153 -11.56291 -11.41545 -11.01147 -10.98811 -10.83259 -10.73893 -10.47391 -10.37517 -10.13598 -9.79393 -9.20822 -8.62316 -8.34069 -8.23613 -7.77652 -6.22943 -4.30371 1.31411 1.68068 2.60192 3.21527 3.28874 3.29199 3.34271 3.82475 4.13218 4.31053 4.98598 5.04375 5.13414 5.29112 5.40659 5.62098 5.66729 5.71074 5.80161 5.82074 5.88941 5.98927 6.17940 6.26148 6.30022 6.42518 6.55470 6.64344 6.71192 6.75596 6.85188 7.16890 7.20535 7.49643 7.69299 7.98958 8.27405 8.71479 8.91315 9.36292 10.83078 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.011527 B = 0.009975 C = 0.005877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2428.464662 B = 2806.246103 C = 4762.959407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.115 3.885 3 N -0.587 5.587 4 C 0.233 3.767 5 C -0.546 4.546 6 H 0.063 0.937 7 C 0.077 3.923 8 N -0.879 5.879 9 Si 0.884 3.116 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.272 1.272 13 C 0.558 3.442 14 O -0.568 6.568 15 C -0.116 4.116 16 C -0.071 4.071 17 C -0.130 4.130 18 C -0.068 4.068 19 C -0.117 4.117 20 C -0.043 4.043 21 Cl -0.070 7.070 22 C -0.050 4.050 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.043 0.957 29 H 0.035 0.965 30 H 0.266 0.734 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.278 4.625 -6.583 8.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.008 4.008 3 N -0.316 5.316 4 C 0.113 3.887 5 C -0.584 4.584 6 H 0.081 0.919 7 C -0.129 4.129 8 N -0.515 5.515 9 Si 0.711 3.289 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.197 1.197 13 C 0.346 3.654 14 O -0.450 6.450 15 C -0.119 4.119 16 C -0.090 4.090 17 C -0.148 4.148 18 C -0.069 4.069 19 C -0.174 4.174 20 C -0.069 4.069 21 Cl -0.041 7.041 22 C -0.068 4.068 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.091 0.909 27 H 0.098 0.902 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 0.255 4.463 -6.807 8.144 hybrid contribution 0.927 -0.112 0.876 1.281 sum 1.182 4.351 -5.931 7.450 Atomic orbital electron populations 1.22096 0.96762 1.01268 1.01989 1.21272 0.93576 0.83370 1.02631 1.48217 1.61849 1.13629 1.07929 1.19557 0.97403 0.92659 0.79071 1.21382 1.03621 1.27505 1.05884 0.91871 1.24864 0.97049 0.94451 0.96487 1.69911 1.36303 1.28242 1.17065 0.86687 0.84173 0.79332 0.78697 1.19809 1.20991 1.19663 1.18248 0.77903 0.85475 0.83800 1.90681 1.56401 1.66532 1.31376 1.19809 0.98520 0.94694 0.98870 1.21146 0.99007 0.92158 0.96690 1.20735 0.97044 0.96769 1.00251 1.19850 0.95986 0.95550 0.95508 1.20861 1.00812 0.92389 1.03329 1.20646 0.94231 0.95190 0.96862 1.98341 1.45556 1.94400 1.65832 1.22214 0.93585 0.96524 0.94489 0.92364 0.92445 0.92903 0.90938 0.90202 0.93894 0.94647 0.92384 0.85454 0.85315 0.90960 0.91362 0.90822 0.80776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 10.24 37.16 0.38 -2.22 16 2 C 0.11 2.12 6.16 -4.04 -0.02 2.09 16 3 N -0.59 -12.45 2.46 -176.17 -0.43 -12.88 16 4 C 0.23 5.45 4.68 -5.19 -0.02 5.42 16 5 C -0.55 -13.53 6.54 -34.44 -0.23 -13.75 16 6 H 0.06 1.59 7.77 -52.49 -0.41 1.18 16 7 C 0.08 1.95 5.46 -17.82 -0.10 1.85 16 8 N -0.88 -23.45 13.29 55.43 0.74 -22.71 16 9 Si 0.88 20.08 29.54 -169.99 -5.02 15.06 16 10 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 13 C 0.56 12.02 7.22 -12.33 -0.09 11.93 16 14 O -0.57 -13.07 16.57 5.32 0.09 -12.98 16 15 C -0.12 -2.31 4.72 -104.97 -0.50 -2.81 16 16 C -0.07 -1.21 9.72 -39.18 -0.38 -1.59 16 17 C -0.13 -1.92 9.68 -39.64 -0.38 -2.30 16 18 C -0.07 -1.07 5.89 -104.50 -0.62 -1.68 16 19 C -0.12 -1.43 9.61 36.00 0.35 -1.09 16 20 C -0.04 -0.79 6.31 -39.55 -0.25 -1.04 16 21 Cl -0.07 -1.26 27.27 -51.86 -1.41 -2.68 16 22 C -0.05 -1.02 7.51 -39.14 -0.29 -1.31 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 25 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.07 1.33 7.35 -51.93 -0.38 0.95 16 27 H 0.08 1.45 8.11 -51.93 -0.42 1.03 16 28 H 0.04 1.07 5.96 -51.93 -0.31 0.76 16 29 H 0.04 0.87 8.12 -51.93 -0.42 0.45 16 30 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 31 H 0.13 1.98 8.06 -52.49 -0.42 1.55 16 32 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 35 H 0.07 0.94 6.88 -51.93 -0.36 0.58 16 36 H 0.18 3.95 4.94 -52.49 -0.26 3.69 16 LS Contribution 318.36 15.07 4.80 4.80 Total: -1.00 -27.71 318.36 -8.05 -35.76 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -4.65 Total: 2.14 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -2.15 Total: -6.50 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.30 Total: -35.59 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.09 Total: -12.98 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -1.41 Total: -2.68 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.71 -8.05 -35.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063021679.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.602 kcal (2) G-P(sol) polarization free energy of solvation -27.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds