Wall clock time and date at job start Tue Mar 31 2020 05:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 H 1.08999 * 109.47091 * 55.00324 * 3 2 1 5 5 C 1.50706 * 109.46812 * 174.99913 * 3 2 1 6 6 H 1.07998 * 119.99769 * 120.00769 * 5 3 2 7 7 C 1.37877 * 120.00286 * 299.99911 * 5 3 2 8 8 N 1.31515 * 119.99896 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99872 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47398 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46974 * 120.00544 * 9 7 5 12 12 H 1.48508 * 109.47010 * 240.00184 * 9 7 5 13 13 N 1.46499 * 109.47341 * 295.00080 * 3 2 1 14 14 C 1.34777 * 119.99665 * 85.27876 * 13 3 2 15 15 O 1.21553 * 120.00289 * 359.72074 * 14 13 3 16 16 C 1.47855 * 119.99755 * 179.72373 * 14 13 3 17 17 C 1.39593 * 120.13893 * 179.97438 * 16 14 13 18 18 C 1.37938 * 119.88016 * 180.02562 * 17 16 14 19 19 C 1.38359 * 120.16220 * 359.97438 * 18 17 16 20 20 C 1.50699 * 119.86124 * 179.97438 * 19 18 17 21 21 C 1.38447 * 120.27863 * 0.02678 * 19 18 17 22 22 Cl 1.73601 * 119.94278 * 179.97438 * 21 19 18 23 23 C 1.38111 * 120.11482 * 359.71904 * 21 19 18 24 24 H 1.09004 * 109.47177 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46986 * 299.99873 * 1 2 3 26 26 H 1.09003 * 109.47322 * 59.99862 * 1 2 3 27 27 H 1.09002 * 109.46986 * 240.00127 * 2 1 3 28 28 H 1.08994 * 109.47111 * 120.00040 * 2 1 3 29 29 H 0.96999 * 119.99952 * 179.97438 * 8 7 5 30 30 H 0.97001 * 119.99790 * 264.99588 * 13 3 2 31 31 H 1.08007 * 120.05978 * 0.02562 * 17 16 14 32 32 H 1.08003 * 119.91992 * 180.02562 * 18 17 16 33 33 H 1.09005 * 109.46709 * 90.00473 * 20 19 18 34 34 H 1.08998 * 109.47306 * 210.00071 * 20 19 18 35 35 H 1.08999 * 109.47423 * 330.00816 * 20 19 18 36 36 H 1.08001 * 120.07900 * 180.28009 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1471 1.8889 -0.6522 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0049 0.8812 1.3817 10 1 6.5987 1.5473 0.1947 11 1 6.3990 1.6166 2.6103 12 1 6.4970 -0.5176 1.4629 13 7 1.6524 2.0975 -1.2518 14 6 0.4371 2.6693 -1.3649 15 8 -0.3392 2.6371 -0.4301 16 6 0.0483 3.3357 -2.6262 17 6 -1.2098 3.9284 -2.7468 18 6 -1.5672 4.5483 -3.9261 19 6 -0.6819 4.5842 -4.9887 20 6 -1.0796 5.2626 -6.2741 21 6 0.5676 3.9984 -4.8763 22 17 1.6713 4.0480 -6.2153 23 6 0.9393 3.3793 -3.6991 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8293 -0.0619 2.9495 30 1 2.2719 2.1232 -1.9977 31 1 -1.9021 3.9018 -1.9182 32 1 -2.5403 5.0074 -4.0199 33 1 -0.7919 6.3133 -6.2345 34 1 -0.5758 4.7793 -7.1111 35 1 -2.1589 5.1863 -6.4065 36 1 1.9159 2.9266 -3.6105 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063021701.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:10 Heat of formation + Delta-G solvation = -34.095702 kcal Electronic energy + Delta-G solvation = -19480.135357 eV Core-core repulsion = 16375.458534 eV Total energy + Delta-G solvation = -3104.676824 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.00137 -38.40349 -36.50502 -35.10055 -33.19956 -32.29683 -31.05584 -30.58220 -27.78237 -26.61759 -23.30042 -22.85787 -22.25115 -20.35218 -19.39260 -18.04100 -16.17965 -16.10604 -15.39768 -15.10274 -14.85121 -14.68124 -14.18293 -14.12227 -13.93601 -13.06552 -12.73676 -12.62493 -12.50861 -12.11514 -11.95270 -11.62379 -11.32775 -11.32364 -11.27243 -10.99436 -10.96180 -10.85342 -10.32533 -10.20400 -9.65395 -9.18020 -9.06025 -8.99985 -8.70412 -8.52409 -7.87222 -6.14251 -4.23753 0.80696 1.11364 2.00393 3.09708 3.22990 3.31114 3.33735 3.96790 4.04068 4.35042 4.57479 4.59039 4.96625 5.15276 5.17357 5.29972 5.36620 5.40431 5.50230 5.65910 5.85170 6.02774 6.23388 6.33616 6.38193 6.44752 6.63404 6.64778 7.03048 7.17663 7.33078 7.39477 7.59794 7.70262 7.87363 8.15436 8.59678 8.74242 9.04267 9.43494 10.91143 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.020977 B = 0.004533 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.500685 B = 6175.379799 C = 7146.326007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.269 3.731 4 H 0.052 0.948 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.699 5.699 14 C 0.542 3.458 15 O -0.541 6.541 16 C -0.113 4.113 17 C -0.057 4.057 18 C -0.119 4.119 19 C -0.064 4.064 20 C -0.120 4.120 21 C -0.045 4.045 22 Cl -0.069 7.069 23 C -0.077 4.077 24 H 0.023 0.977 25 H 0.050 0.950 26 H 0.038 0.962 27 H 0.032 0.968 28 H 0.100 0.900 29 H 0.264 0.736 30 H 0.388 0.612 31 H 0.142 0.858 32 H 0.135 0.865 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.079 7.336 -15.362 18.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.069 0.931 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.208 1.208 13 N -0.347 5.347 14 C 0.327 3.673 15 O -0.421 6.421 16 C -0.117 4.117 17 C -0.076 4.076 18 C -0.137 4.137 19 C -0.065 4.065 20 C -0.177 4.177 21 C -0.072 4.072 22 Cl -0.040 7.040 23 C -0.096 4.096 24 H 0.042 0.958 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.118 0.882 29 H 0.074 0.926 30 H 0.221 0.779 31 H 0.160 0.840 32 H 0.153 0.847 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.474 7.188 -14.594 17.903 hybrid contribution 1.480 -0.077 -0.346 1.522 sum -5.994 7.111 -14.940 17.598 Atomic orbital electron populations 1.21845 0.98335 0.98134 1.01221 1.21937 0.92645 0.99663 1.02395 1.18857 0.94369 0.89268 0.80726 0.93064 1.21259 0.90607 1.39084 1.06380 0.92012 1.24876 0.98639 0.94739 0.95340 1.69902 1.35062 1.37562 1.09350 0.86403 0.84819 0.77796 0.78151 1.19721 1.20860 1.20845 1.46493 1.14399 1.55087 1.18707 1.18043 0.83155 0.79494 0.86568 1.90748 1.51415 1.60292 1.39648 1.20321 0.95193 1.01327 0.94863 1.21405 0.95237 0.93346 0.97635 1.20967 0.99701 1.00760 0.92302 1.19903 0.92158 0.97413 0.97044 1.20901 1.02213 1.00557 0.93989 1.20650 0.92084 1.04268 0.90170 1.98355 1.62367 1.97479 1.45796 1.21290 1.00028 0.97368 0.90911 0.95765 0.93089 0.94329 0.94965 0.88155 0.92583 0.77891 0.84009 0.84690 0.90526 0.90752 0.90990 0.84342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.52 37.16 0.32 -2.76 16 2 C -0.13 -3.08 5.45 -26.73 -0.15 -3.23 16 3 C 0.27 6.71 2.24 -69.08 -0.15 6.56 16 4 H 0.05 1.47 7.57 -51.93 -0.39 1.08 16 5 C -0.53 -13.99 8.73 -34.44 -0.30 -14.29 16 6 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.44 11.29 55.43 0.63 -23.82 16 9 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 10 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 N -0.70 -14.49 4.97 -55.87 -0.28 -14.77 16 14 C 0.54 10.82 6.35 -12.32 -0.08 10.74 16 15 O -0.54 -12.43 13.50 5.32 0.07 -12.36 16 16 C -0.11 -1.80 5.87 -104.97 -0.62 -2.41 16 17 C -0.06 -0.78 9.59 -39.19 -0.38 -1.16 16 18 C -0.12 -1.30 9.68 -39.65 -0.38 -1.69 16 19 C -0.06 -0.70 5.89 -104.50 -0.62 -1.32 16 20 C -0.12 -0.96 9.61 36.01 0.35 -0.61 16 21 C -0.05 -0.56 6.31 -39.55 -0.25 -0.81 16 22 Cl -0.07 -0.77 27.27 -51.86 -1.41 -2.18 16 23 C -0.08 -1.06 9.32 -39.14 -0.36 -1.43 16 24 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 26 H 0.04 0.84 5.66 -51.93 -0.29 0.54 16 27 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.10 2.67 5.95 -51.93 -0.31 2.37 16 29 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.39 7.06 6.57 -40.82 -0.27 6.79 16 31 H 0.14 1.94 7.65 -52.48 -0.40 1.53 16 32 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.59 6.88 -51.93 -0.36 0.24 16 35 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 36 H 0.14 1.82 6.40 -52.49 -0.34 1.48 16 LS Contribution 311.89 15.07 4.70 4.70 Total: -1.00 -29.16 311.89 -8.45 -37.62 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -4.42 Total: 6.07 kcal Atomic # 6 Polarization: -7.99 SS G_CDS: -2.72 Total: -10.70 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.35 Total: -38.59 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.07 Total: -12.36 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.41 Total: -2.18 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.16 -8.45 -37.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063021701.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.519 kcal (2) G-P(sol) polarization free energy of solvation -29.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds