Wall clock time and date at job start Tue Mar 31 2020 05:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47538 * 2 1 4 4 C 1.50699 * 109.47143 * 120.00252 * 2 1 3 5 5 H 1.08003 * 119.99994 * 119.99845 * 4 2 1 6 6 C 1.37878 * 120.00193 * 300.00005 * 4 2 1 7 7 N 1.31518 * 119.99686 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00250 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47233 * 59.99613 * 8 6 4 10 10 H 1.48503 * 109.47396 * 179.97438 * 8 6 4 11 11 H 1.48507 * 109.47068 * 299.99832 * 8 6 4 12 12 N 1.46500 * 109.47128 * 239.99829 * 2 1 3 13 13 C 1.46506 * 120.00367 * 300.00445 * 12 2 1 14 14 C 1.34782 * 119.99884 * 119.99743 * 12 2 1 15 15 O 1.21554 * 119.99595 * 4.35499 * 14 12 2 16 16 C 1.47845 * 119.99967 * 184.34569 * 14 12 2 17 17 C 1.39589 * 120.14816 * 320.31836 * 16 14 12 18 18 C 1.37941 * 119.85611 * 179.78823 * 17 16 14 19 19 C 1.38378 * 120.13889 * 0.48555 * 18 17 16 20 20 C 1.38341 * 120.29744 * 359.74839 * 19 18 17 21 21 C 1.50702 * 119.92912 * 179.97438 * 20 19 18 22 22 Cl 1.80295 * 109.47070 * 270.02081 * 21 20 19 23 23 C 1.37976 * 120.14341 * 0.02562 * 20 19 18 24 24 H 1.08997 * 109.46903 * 60.00221 * 1 2 3 25 25 H 1.09004 * 109.46750 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46709 * 299.99890 * 1 2 3 27 27 H 0.96996 * 120.00006 * 179.97438 * 7 6 4 28 28 H 1.08995 * 109.46609 * 271.72163 * 13 12 2 29 29 H 1.08996 * 109.46926 * 151.72048 * 13 12 2 30 30 H 1.09000 * 109.46827 * 31.71702 * 13 12 2 31 31 H 1.08004 * 120.07558 * 0.02562 * 17 16 14 32 32 H 1.07992 * 119.93026 * 180.23466 * 18 17 16 33 33 H 1.08008 * 119.85267 * 179.76123 * 19 18 17 34 34 H 1.08997 * 109.46867 * 30.01998 * 21 20 19 35 35 H 1.08998 * 109.46765 * 150.01527 * 21 20 19 36 36 H 1.07995 * 120.07660 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3225 -1.1197 4.0079 9 1 3.8076 -1.1192 4.0076 10 1 1.8280 -0.4194 5.2205 11 1 1.8281 -2.5200 4.0081 12 7 2.0184 -0.6906 -1.1961 13 6 1.6644 -2.0933 -1.4281 14 6 2.7932 -0.0356 -2.0834 15 8 3.1522 1.1026 -1.8527 16 6 3.2066 -0.7015 -3.3369 17 6 3.5666 -2.0502 -3.3286 18 6 3.9471 -2.6666 -4.5025 19 6 3.9822 -1.9484 -5.6848 20 6 3.6313 -0.6103 -5.6991 21 6 3.6730 0.1642 -6.9912 22 17 5.3061 0.8995 -7.1987 23 6 3.2444 0.0171 -4.5327 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 0.7090 1.1613 3.4844 28 1 2.3991 -2.7378 -0.9457 29 1 1.6537 -2.2928 -2.4996 30 1 0.6771 -2.2924 -1.0114 31 1 3.5435 -2.6109 -2.4058 32 1 4.2222 -3.7109 -4.4981 33 1 4.2846 -2.4347 -6.6005 34 1 3.4688 -0.5081 -7.8245 35 1 2.9201 0.9520 -6.9671 36 1 2.9703 1.0616 -4.5452 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063090886.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:09 Heat of formation + Delta-G solvation = -16.539225 kcal Electronic energy + Delta-G solvation = -19544.208731 eV Core-core repulsion = 16440.293213 eV Total energy + Delta-G solvation = -3103.915518 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.05920 -38.22643 -36.10088 -35.41441 -33.28632 -32.28584 -31.13442 -29.25988 -26.92054 -26.18887 -25.24750 -23.80662 -21.82350 -20.82747 -18.70104 -16.78021 -16.47054 -16.28650 -15.65712 -15.30684 -14.69643 -14.62747 -14.31533 -14.14860 -13.51631 -13.36191 -13.01607 -12.64140 -12.59099 -12.26706 -11.88375 -11.58085 -11.44707 -11.18339 -11.06520 -10.81419 -10.74612 -10.60475 -10.56607 -10.29345 -10.17856 -9.21821 -9.13988 -8.94222 -8.75647 -8.44141 -7.64405 -6.08620 -4.16827 0.90841 1.18206 2.27329 3.26973 3.29187 3.32608 3.34960 3.78493 3.96488 4.36199 4.38969 4.56767 4.84961 4.94914 5.03237 5.15122 5.22149 5.28425 5.47138 5.66315 5.78420 5.89568 6.00880 6.23737 6.27959 6.33692 6.40545 6.72986 6.77239 6.82718 7.01757 7.38574 7.48396 7.68742 7.98377 8.16493 8.46266 8.79638 8.97889 9.49529 10.96754 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.030910 B = 0.003851 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.648437 B = 7269.418580 C = 7518.293908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.064 0.936 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.584 5.584 13 C 0.079 3.921 14 C 0.542 3.458 15 O -0.544 6.544 16 C -0.114 4.114 17 C -0.083 4.083 18 C -0.129 4.129 19 C -0.087 4.087 20 C -0.121 4.121 21 C 0.013 3.987 22 Cl -0.179 7.179 23 C -0.050 4.050 24 H 0.011 0.989 25 H 0.031 0.969 26 H 0.095 0.905 27 H 0.264 0.736 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.139 0.861 32 H 0.129 0.871 33 H 0.124 0.876 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.295 -7.304 -17.705 19.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.158 3.842 3 H 0.082 0.918 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.314 5.314 13 C -0.065 4.065 14 C 0.329 3.671 15 O -0.423 6.423 16 C -0.117 4.117 17 C -0.102 4.102 18 C -0.147 4.147 19 C -0.106 4.106 20 C -0.121 4.121 21 C -0.049 4.049 22 Cl -0.153 7.153 23 C -0.069 4.069 24 H 0.031 0.969 25 H 0.050 0.950 26 H 0.113 0.887 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.157 0.843 32 H 0.147 0.853 33 H 0.142 0.858 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.483 -6.516 -17.409 18.754 hybrid contribution 0.367 -0.594 0.927 1.160 sum 2.851 -7.109 -16.482 18.175 Atomic orbital electron populations 1.22104 0.98086 0.99451 1.00933 1.18989 0.90896 0.94566 0.79778 0.91778 1.21258 1.31964 1.13032 0.90239 0.92322 1.24889 0.94915 0.94965 0.98960 1.69864 1.36280 1.22535 1.23916 0.86542 0.79278 0.79536 0.81944 1.20222 1.21142 1.20225 1.48180 1.48315 1.11648 1.23256 1.21919 1.01590 0.83203 0.99792 1.18255 0.79604 0.86086 0.83195 1.90753 1.55651 1.18433 1.77468 1.20224 1.02385 0.94426 0.94652 1.21781 0.95547 0.93622 0.99227 1.21070 1.01099 1.00262 0.92301 1.21107 0.97688 0.93332 0.98452 1.19586 1.03677 0.94552 0.94326 1.23128 0.85815 0.99193 0.96811 1.98742 1.33088 1.85565 1.97872 1.21065 0.95637 0.99707 0.90481 0.96946 0.95021 0.88665 0.92589 0.92981 0.92033 0.90940 0.84339 0.85329 0.85766 0.88044 0.87946 0.85023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 8.95 37.16 0.33 -3.16 16 2 C 0.26 6.58 2.63 -69.08 -0.18 6.40 16 3 H 0.06 1.90 6.91 -51.93 -0.36 1.55 16 4 C -0.53 -14.20 8.37 -34.44 -0.29 -14.48 16 5 H 0.06 1.55 7.60 -52.48 -0.40 1.15 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.04 11.32 55.43 0.63 -24.42 16 8 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 12 N -0.58 -12.51 2.75 -176.37 -0.49 -12.99 16 13 C 0.08 1.30 8.14 59.85 0.49 1.79 16 14 C 0.54 11.58 7.35 -12.33 -0.09 11.49 16 15 O -0.54 -13.86 16.25 5.32 0.09 -13.78 16 16 C -0.11 -1.87 5.22 -104.97 -0.55 -2.41 16 17 C -0.08 -1.12 7.47 -39.19 -0.29 -1.41 16 18 C -0.13 -1.37 10.03 -39.64 -0.40 -1.77 16 19 C -0.09 -0.88 9.69 -39.49 -0.38 -1.26 16 20 C -0.12 -1.36 5.25 -104.68 -0.55 -1.91 16 21 C 0.01 0.11 6.78 36.01 0.24 0.36 16 22 Cl -0.18 -1.97 29.13 -51.86 -1.51 -3.48 16 23 C -0.05 -0.72 9.28 -39.18 -0.36 -1.08 16 24 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.03 0.69 6.67 -51.93 -0.35 0.34 16 26 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 27 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.05 0.82 7.23 -51.93 -0.38 0.44 16 29 H 0.06 0.84 5.37 -51.93 -0.28 0.56 16 30 H 0.07 1.21 6.43 -51.93 -0.33 0.87 16 31 H 0.14 1.79 5.55 -52.48 -0.29 1.49 16 32 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 33 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 34 H 0.10 0.63 8.08 -51.93 -0.42 0.21 16 35 H 0.10 0.78 8.08 -51.93 -0.42 0.36 16 36 H 0.13 1.93 8.06 -52.49 -0.42 1.51 16 LS Contribution 313.40 15.07 4.72 4.72 Total: -1.00 -31.55 313.40 -8.07 -39.62 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -4.36 Total: 0.13 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -2.13 Total: -5.77 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.14 Total: -37.41 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: 0.09 Total: -13.78 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 17 Polarization: -1.97 SS G_CDS: -1.51 Total: -3.48 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.55 -8.07 -39.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063090886.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.078 kcal (2) G-P(sol) polarization free energy of solvation -31.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds