Wall clock time and date at job start Tue Mar 31 2020 05:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08997 * 109.47236 * 2 1 4 4 C 1.50702 * 109.47211 * 240.00367 * 2 1 3 5 5 H 1.08003 * 119.99770 * 240.00430 * 4 2 1 6 6 C 1.37872 * 120.00356 * 59.71933 * 4 2 1 7 7 N 1.31517 * 119.99678 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00268 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47139 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.46784 * 120.00544 * 8 6 4 11 11 H 1.48500 * 109.47257 * 240.00111 * 8 6 4 12 12 N 1.46501 * 109.47141 * 120.00256 * 2 1 3 13 13 C 1.46498 * 119.99957 * 60.00066 * 12 2 1 14 14 C 1.34783 * 119.99882 * 239.99628 * 12 2 1 15 15 O 1.21548 * 119.99724 * 6.98945 * 14 12 2 16 16 C 1.47839 * 119.99944 * 186.98707 * 14 12 2 17 17 C 1.39602 * 120.14472 * 20.29852 * 16 14 12 18 18 C 1.37932 * 119.85110 * 179.79432 * 17 16 14 19 19 C 1.38384 * 120.14798 * 0.48244 * 18 17 16 20 20 C 1.38334 * 120.29004 * 359.74942 * 19 18 17 21 21 C 1.50705 * 119.92739 * 179.97438 * 20 19 18 22 22 Cl 1.80299 * 109.47046 * 270.02274 * 21 20 19 23 23 C 1.37983 * 120.14773 * 0.02562 * 20 19 18 24 24 H 1.08996 * 109.47292 * 299.99989 * 1 2 3 25 25 H 1.09006 * 109.47238 * 59.99874 * 1 2 3 26 26 H 1.09006 * 109.47424 * 179.97438 * 1 2 3 27 27 H 0.97005 * 119.99755 * 179.97438 * 7 6 4 28 28 H 1.08996 * 109.47382 * 85.93178 * 13 12 2 29 29 H 1.09002 * 109.46615 * 205.92754 * 13 12 2 30 30 H 1.09000 * 109.47375 * 325.92680 * 13 12 2 31 31 H 1.07997 * 120.07056 * 0.02562 * 17 16 14 32 32 H 1.08002 * 119.92945 * 180.23683 * 18 17 16 33 33 H 1.07996 * 119.85792 * 179.77073 * 19 18 17 34 34 H 1.08997 * 109.46957 * 30.02529 * 21 20 19 35 35 H 1.08997 * 109.46905 * 150.02213 * 21 20 19 36 36 H 1.07995 * 120.07631 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6531 -1.5885 -1.1314 6 6 1.6945 -0.2427 -2.4827 7 7 0.9342 0.8237 -2.6033 8 14 2.3166 -1.1236 -4.0080 9 1 3.1463 -2.2870 -3.6038 10 1 1.1612 -1.5957 -4.8127 11 1 3.1363 -0.1886 -4.8199 12 7 2.0183 -0.6907 1.1961 13 6 1.6644 -2.0932 1.4279 14 6 2.7932 -0.0357 2.0833 15 8 2.9827 1.1585 1.9594 16 6 3.4127 -0.7698 3.2072 17 6 3.5653 -2.1558 3.1399 18 6 4.1480 -2.8341 4.1902 19 6 4.5717 -2.1450 5.3129 20 6 4.4190 -0.7721 5.3880 21 6 4.8828 -0.0300 6.6148 22 17 3.5358 0.0564 7.8101 23 6 3.8419 -0.0809 4.3424 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 0.6969 1.1530 -3.4844 28 1 2.3753 -2.7376 0.9108 29 1 1.6944 -2.3036 2.4970 30 1 0.6601 -2.2821 1.0485 31 1 3.2314 -2.6952 2.2660 32 1 4.2702 -3.9059 4.1378 33 1 5.0239 -2.6812 6.1341 34 1 5.7291 -0.5544 7.0584 35 1 5.1864 0.9790 6.3359 36 1 3.7237 0.9909 4.4020 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063090889.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:11 Heat of formation + Delta-G solvation = -3.529929 kcal Electronic energy + Delta-G solvation = -19572.839511 eV Core-core repulsion = 16469.488119 eV Total energy + Delta-G solvation = -3103.351392 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.11505 -38.20538 -36.10697 -35.49246 -33.40498 -32.22732 -31.09990 -29.29177 -27.06970 -26.16741 -25.25473 -23.76952 -21.75848 -20.83805 -18.81405 -16.74960 -16.49574 -16.26945 -15.63921 -15.17219 -14.77424 -14.51064 -14.39986 -14.18668 -13.51282 -13.33751 -13.04430 -12.72581 -12.59695 -12.23716 -11.95530 -11.58231 -11.39540 -11.11644 -11.00625 -10.76468 -10.72701 -10.58313 -10.48729 -10.27057 -10.17561 -9.20269 -9.11902 -8.93122 -8.75961 -8.46184 -7.64063 -6.10145 -4.18731 0.89590 1.18669 2.27073 3.23914 3.29678 3.32626 3.35331 3.83578 4.04830 4.36368 4.38922 4.58175 4.85965 4.96386 5.04941 5.17154 5.20624 5.28925 5.49282 5.63456 5.80252 5.91154 5.96346 6.20111 6.30607 6.35933 6.41215 6.74961 6.79532 6.85522 7.03597 7.39134 7.48696 7.68241 7.99023 8.15205 8.46117 8.78337 8.97632 9.47998 10.95078 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.031942 B = 0.003903 C = 0.003725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.388408 B = 7171.483642 C = 7514.229839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.257 3.743 3 H 0.064 0.936 4 C -0.526 4.526 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.584 5.584 13 C 0.073 3.927 14 C 0.544 3.456 15 O -0.548 6.548 16 C -0.120 4.120 17 C -0.098 4.098 18 C -0.133 4.133 19 C -0.085 4.085 20 C -0.125 4.125 21 C 0.014 3.986 22 Cl -0.181 7.181 23 C -0.045 4.045 24 H 0.012 0.988 25 H 0.095 0.905 26 H 0.030 0.970 27 H 0.263 0.737 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.156 0.844 32 H 0.128 0.872 33 H 0.124 0.876 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.907 -7.507 16.098 18.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.158 3.842 3 H 0.082 0.918 4 C -0.565 4.565 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.314 5.314 13 C -0.070 4.070 14 C 0.331 3.669 15 O -0.428 6.428 16 C -0.123 4.123 17 C -0.116 4.116 18 C -0.150 4.150 19 C -0.103 4.103 20 C -0.125 4.125 21 C -0.049 4.049 22 Cl -0.155 7.155 23 C -0.064 4.064 24 H 0.032 0.968 25 H 0.113 0.887 26 H 0.049 0.951 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.173 0.827 32 H 0.146 0.854 33 H 0.142 0.858 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.788 -6.745 15.938 18.248 hybrid contribution 0.241 -0.596 -0.876 1.087 sum 6.029 -7.341 15.062 17.807 Atomic orbital electron populations 1.22094 0.98092 0.99428 1.01011 1.19001 0.91099 0.94527 0.79606 0.91779 1.21340 1.31833 1.13135 0.90209 0.92197 1.24895 0.94896 0.94997 0.98989 1.69892 1.36084 1.22785 1.23708 0.86425 0.78600 0.79569 0.82703 1.19807 1.20911 1.20884 1.48138 1.48388 1.11648 1.23258 1.22175 1.01523 0.83481 0.99848 1.18216 0.79692 0.86864 0.82118 1.90723 1.62379 1.14543 1.75148 1.20245 1.02088 0.94043 0.95921 1.22511 0.95386 0.93796 0.99956 1.21111 0.99811 1.00176 0.93952 1.21136 0.98111 0.93175 0.97913 1.19592 1.03346 0.94276 0.95288 1.23141 0.90064 1.03182 0.88477 1.98737 1.54899 1.99106 1.62753 1.21132 0.93621 1.00511 0.91146 0.96846 0.88673 0.95063 0.92685 0.92528 0.91384 0.90994 0.82678 0.85365 0.85826 0.88053 0.87885 0.84781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 8.94 37.15 0.33 -3.21 16 2 C 0.26 6.58 2.64 -69.09 -0.18 6.40 16 3 H 0.06 1.90 6.92 -51.93 -0.36 1.54 16 4 C -0.53 -14.08 8.37 -34.44 -0.29 -14.37 16 5 H 0.06 1.57 7.53 -52.48 -0.40 1.17 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.93 11.30 55.43 0.63 -24.30 16 8 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 9 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 N -0.58 -12.54 2.75 -176.39 -0.49 -13.02 16 13 C 0.07 1.20 7.92 59.85 0.47 1.68 16 14 C 0.54 11.64 7.52 -12.33 -0.09 11.55 16 15 O -0.55 -13.77 15.88 5.32 0.08 -13.69 16 16 C -0.12 -1.99 5.57 -104.97 -0.58 -2.57 16 17 C -0.10 -1.33 7.61 -39.18 -0.30 -1.63 16 18 C -0.13 -1.43 10.03 -39.64 -0.40 -1.83 16 19 C -0.08 -0.87 9.69 -39.49 -0.38 -1.25 16 20 C -0.12 -1.43 5.25 -104.68 -0.55 -1.98 16 21 C 0.01 0.12 6.78 36.01 0.24 0.37 16 22 Cl -0.18 -1.95 29.13 -51.86 -1.51 -3.46 16 23 C -0.04 -0.66 9.24 -39.18 -0.36 -1.02 16 24 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.09 2.50 6.05 -51.93 -0.31 2.18 16 26 H 0.03 0.68 6.69 -51.93 -0.35 0.34 16 27 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.06 0.87 6.90 -51.93 -0.36 0.51 16 29 H 0.07 0.94 5.21 -51.93 -0.27 0.67 16 30 H 0.07 1.19 6.44 -51.93 -0.33 0.86 16 31 H 0.16 2.00 4.05 -52.49 -0.21 1.78 16 32 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 34 H 0.10 0.66 8.08 -51.93 -0.42 0.24 16 35 H 0.10 0.83 8.08 -51.93 -0.42 0.41 16 36 H 0.13 2.03 7.79 -52.49 -0.41 1.62 16 LS Contribution 311.10 15.07 4.69 4.69 Total: -1.00 -31.26 311.10 -8.04 -39.30 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -4.24 Total: 0.92 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -2.18 Total: -6.22 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.14 Total: -37.32 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: 0.08 Total: -13.69 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 17 Polarization: -1.95 SS G_CDS: -1.51 Total: -3.46 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.26 -8.04 -39.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063090889.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.769 kcal (2) G-P(sol) polarization free energy of solvation -31.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds