Wall clock time and date at job start Tue Mar 31 2020 05:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46956 * 2 1 4 4 C 1.50700 * 109.46865 * 119.99389 * 2 1 3 5 5 H 1.08000 * 119.99722 * 119.99742 * 4 2 1 6 6 C 1.37875 * 120.00224 * 300.00130 * 4 2 1 7 7 N 1.31506 * 120.00053 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99962 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47127 * 60.00142 * 8 6 4 10 10 H 1.48494 * 109.47093 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47156 * 300.00177 * 8 6 4 12 12 N 1.46500 * 109.47348 * 239.99608 * 2 1 3 13 13 C 1.46496 * 119.99874 * 300.00192 * 12 2 1 14 14 C 1.34768 * 120.00212 * 119.99970 * 12 2 1 15 15 O 1.21286 * 119.99673 * 0.02562 * 14 12 2 16 16 C 1.50695 * 120.00268 * 179.97438 * 14 12 2 17 17 C 1.50708 * 109.47137 * 180.02562 * 16 14 12 18 18 C 1.38238 * 120.00493 * 100.00431 * 17 16 14 19 19 C 1.38215 * 120.01126 * 180.30116 * 18 17 16 20 20 C 1.38270 * 120.02537 * 359.44038 * 19 18 17 21 21 C 1.38193 * 120.01077 * 0.55549 * 20 19 18 22 22 C 1.38325 * 120.00628 * 280.02349 * 17 16 14 23 23 Cl 1.73606 * 120.01335 * 359.95653 * 22 17 16 24 24 H 1.08999 * 109.46956 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47137 * 300.00179 * 1 2 3 26 26 H 1.08997 * 109.47227 * 60.00406 * 1 2 3 27 27 H 0.96998 * 119.99910 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.47066 * 270.00025 * 13 12 2 29 29 H 1.09000 * 109.47470 * 29.99780 * 13 12 2 30 30 H 1.09001 * 109.47582 * 150.00214 * 13 12 2 31 31 H 1.09002 * 109.47047 * 60.00598 * 16 14 12 32 32 H 1.08997 * 109.47646 * 299.99952 * 16 14 12 33 33 H 1.08002 * 119.99176 * 0.02562 * 18 17 16 34 34 H 1.07997 * 119.98990 * 179.70379 * 19 18 17 35 35 H 1.08000 * 119.98985 * 180.27798 * 20 19 18 36 36 H 1.08003 * 120.00423 * 179.74463 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6033 8 14 2.3212 -1.1201 4.0081 9 1 3.8063 -1.1207 4.0084 10 1 1.8258 -0.4203 5.2205 11 1 1.8257 -2.5200 4.0079 12 7 2.0184 -0.6907 -1.1961 13 6 1.6645 -2.0932 -1.4278 14 6 2.7932 -0.0358 -2.0833 15 8 3.0866 1.1253 -1.8911 16 6 3.2961 -0.7464 -3.3133 17 6 4.1338 0.2007 -4.1335 18 6 5.5130 0.1446 -4.0597 19 6 6.2813 1.0173 -4.8071 20 6 5.6711 1.9390 -5.6376 21 6 4.2924 1.9959 -5.7122 22 6 3.5226 1.1264 -4.9598 23 17 1.7905 1.1970 -5.0534 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 0.7087 1.1614 3.4843 28 1 2.4158 -2.7377 -0.9714 29 1 0.6905 -2.3003 -0.9845 30 1 1.6239 -2.2854 -2.5000 31 1 2.4485 -1.0893 -3.9068 32 1 3.9018 -1.6025 -3.0163 33 1 5.9903 -0.5783 -3.4146 34 1 7.3588 0.9763 -4.7456 35 1 6.2721 2.6177 -6.2247 36 1 3.8158 2.7187 -6.3578 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063094118.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:15 Heat of formation + Delta-G solvation = -37.504918 kcal Electronic energy + Delta-G solvation = -19773.116504 eV Core-core repulsion = 16668.291846 eV Total energy + Delta-G solvation = -3104.824658 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.06668 -39.80363 -37.36531 -37.08435 -34.85326 -33.83188 -31.64547 -31.38910 -28.44572 -27.54358 -27.24316 -23.65381 -23.59919 -22.15638 -19.90410 -18.50868 -18.03065 -17.77940 -17.04931 -16.92647 -16.34073 -15.89995 -15.78304 -14.81345 -14.74807 -14.40984 -14.27093 -14.01307 -13.81811 -13.45643 -13.12603 -12.98571 -12.90160 -12.69824 -12.59732 -12.50859 -12.42433 -12.18855 -12.15749 -12.10679 -11.67503 -11.17762 -10.69735 -10.47792 -9.80652 -9.56868 -9.28137 -8.13019 -6.30014 0.23263 0.33965 1.22561 1.41851 1.44257 1.51755 1.87822 2.32675 2.49194 2.81178 3.14553 3.62425 3.81755 3.94977 4.10685 4.29455 4.40880 4.48545 4.50651 4.61020 4.71389 4.79090 4.82470 4.88224 5.00100 5.05253 5.08953 5.31014 5.43911 5.47448 5.50376 5.63526 5.69612 5.92549 6.05575 6.17752 6.78256 6.88018 7.34903 7.53560 8.91078 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.025003 B = 0.004704 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.615677 B = 5951.501071 C = 6384.429504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.264 3.736 3 H 0.006 0.994 4 C -0.537 4.537 5 H 0.062 0.938 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.966 3.034 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.262 1.262 12 N -0.604 5.604 13 C 0.081 3.919 14 C 0.502 3.498 15 O -0.593 6.593 16 C -0.095 4.095 17 C -0.074 4.074 18 C -0.110 4.110 19 C -0.116 4.116 20 C -0.110 4.110 21 C -0.124 4.124 22 C -0.040 4.040 23 Cl -0.083 7.083 24 H 0.048 0.952 25 H 0.066 0.934 26 H 0.016 0.984 27 H 0.264 0.736 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.117 0.883 32 H 0.128 0.872 33 H 0.144 0.856 34 H 0.158 0.842 35 H 0.162 0.838 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.363 -5.147 -17.177 19.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.162 3.838 3 H 0.024 0.976 4 C -0.576 4.576 5 H 0.080 0.920 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.790 3.210 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.186 1.186 12 N -0.334 5.334 13 C -0.061 4.061 14 C 0.291 3.709 15 O -0.475 6.475 16 C -0.135 4.135 17 C -0.075 4.075 18 C -0.128 4.128 19 C -0.134 4.134 20 C -0.128 4.128 21 C -0.142 4.142 22 C -0.066 4.066 23 Cl -0.054 7.054 24 H 0.067 0.933 25 H 0.085 0.915 26 H 0.035 0.965 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.111 0.889 31 H 0.135 0.865 32 H 0.146 0.854 33 H 0.162 0.838 34 H 0.176 0.824 35 H 0.180 0.820 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 7.237 -4.453 -16.932 18.944 hybrid contribution -0.332 0.015 1.189 1.235 sum 6.905 -4.438 -15.743 17.754 Atomic orbital electron populations 1.21876 0.97472 1.00024 0.99703 1.18471 0.91378 0.92126 0.81846 0.97598 1.21555 1.31865 1.13026 0.91108 0.92025 1.25761 0.95091 0.95643 1.02095 1.70025 1.37373 1.24000 1.24420 0.85501 0.78412 0.78985 0.78058 1.20198 1.21030 1.18630 1.48212 1.49311 1.13413 1.22497 1.21831 1.01642 0.80516 1.02158 1.20990 0.78302 0.86730 0.84887 1.90636 1.59661 1.19297 1.77863 1.20759 1.01263 0.98402 0.93055 1.19437 0.94833 0.96981 0.96289 1.21314 0.91667 1.00486 0.99375 1.21592 1.01643 0.94635 0.95522 1.21491 0.93340 0.98930 0.99000 1.21303 0.94739 0.98462 0.99714 1.21036 0.84217 0.99971 1.01406 1.98350 1.11769 1.97772 1.97530 0.93308 0.91483 0.96528 0.92713 0.92226 0.91267 0.88930 0.86543 0.85389 0.83838 0.82443 0.82040 0.83769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.59 8.95 71.98 0.64 -5.94 16 2 C 0.26 14.08 2.64 44.25 0.12 14.19 16 3 H 0.01 0.39 6.90 -2.39 -0.02 0.37 16 4 C -0.54 -29.55 8.37 25.60 0.21 -29.33 16 5 H 0.06 3.26 7.65 -2.91 -0.02 3.24 16 6 C 0.01 0.75 5.30 84.66 0.45 1.19 16 7 N -0.92 -53.95 11.32 21.45 0.24 -53.71 16 8 Si 0.97 43.34 29.54 68.60 2.03 45.37 16 9 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 12 N -0.60 -25.94 2.75 -826.81 -2.28 -28.21 16 13 C 0.08 2.54 9.48 127.77 1.21 3.75 16 14 C 0.50 21.00 7.44 87.66 0.65 21.65 16 15 O -0.59 -30.71 15.28 -3.05 -0.05 -30.76 16 16 C -0.10 -2.78 3.85 29.10 0.11 -2.67 16 17 C -0.07 -2.17 4.43 -19.84 -0.09 -2.26 16 18 C -0.11 -2.70 9.67 22.26 0.22 -2.48 16 19 C -0.12 -2.31 10.05 22.27 0.22 -2.09 16 20 C -0.11 -2.13 10.05 22.27 0.22 -1.91 16 21 C -0.12 -2.97 9.83 22.29 0.22 -2.75 16 22 C -0.04 -1.17 6.19 22.32 0.14 -1.03 16 23 Cl -0.08 -2.54 27.33 -2.72 -0.07 -2.62 16 24 H 0.05 2.19 6.66 -2.39 -0.02 2.17 16 25 H 0.07 3.70 6.07 -2.39 -0.01 3.68 16 26 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 28 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.07 2.23 6.43 -2.39 -0.02 2.21 16 30 H 0.09 2.14 6.44 -2.39 -0.02 2.12 16 31 H 0.12 2.96 6.62 -2.39 -0.02 2.94 16 32 H 0.13 2.92 7.97 -2.39 -0.02 2.91 16 33 H 0.14 2.96 8.04 -2.91 -0.02 2.94 16 34 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 35 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 36 H 0.14 2.90 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -72.85 315.30 5.29 -67.56 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 1.08 Total: 12.04 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: 4.33 Total: -9.67 kcal Atomic # 7 Polarization: -79.89 SS G_CDS: -2.03 Total: -81.92 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -0.05 Total: -30.76 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 17 Polarization: -2.54 SS G_CDS: -0.07 Total: -2.62 kcal Total: -72.85 5.29 -67.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094118.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.060 kcal (2) G-P(sol) polarization free energy of solvation -72.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds