Wall clock time and date at job start Tue Mar 31 2020 05:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 C 1.34777 * 120.00371 * 119.99612 * 12 2 1 15 15 O 1.21281 * 119.99816 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00362 * 179.97438 * 14 12 2 17 17 C 1.50693 * 109.47070 * 180.02562 * 16 14 12 18 18 C 1.38261 * 119.99710 * 269.72306 * 17 16 14 19 19 C 1.38218 * 120.02846 * 179.76521 * 18 17 16 20 20 C 1.38238 * 120.01378 * 0.52012 * 19 18 17 21 21 C 1.38325 * 119.98322 * 359.73669 * 20 19 18 22 22 Cl 1.73598 * 120.01353 * 180.02562 * 21 20 19 23 23 C 1.38193 * 119.99094 * 90.00846 * 17 16 14 24 24 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 25 25 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 26 26 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 29 29 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 30 30 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 31 31 H 1.09000 * 109.47496 * 300.00831 * 16 14 12 32 32 H 1.09000 * 109.46383 * 60.00794 * 16 14 12 33 33 H 1.08000 * 119.98343 * 0.02562 * 18 17 16 34 34 H 1.08008 * 119.99587 * 180.25503 * 19 18 17 35 35 H 1.07991 * 120.00651 * 179.76715 * 20 19 18 36 36 H 1.07996 * 120.01142 * 359.94462 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 6 2.7931 -0.0354 -2.0834 15 8 3.0865 1.1256 -1.8912 16 6 3.2959 -0.7459 -3.3136 17 6 4.1335 0.2013 -4.1336 18 6 3.5411 0.9772 -5.1127 19 6 4.3079 1.8497 -5.8619 20 6 5.6694 1.9392 -5.6399 21 6 6.2635 1.1592 -4.6641 22 17 7.9730 1.2715 -4.3842 23 6 5.4944 0.2898 -3.9107 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.7089 1.1611 3.4845 28 1 0.7376 -2.1442 -1.9996 29 1 2.4629 -2.5817 -1.9866 30 1 1.5295 -2.5968 -0.4711 31 1 3.9016 -1.6021 -3.0168 32 1 2.4483 -1.0887 -3.9070 33 1 2.4782 0.9046 -5.2893 34 1 3.8440 2.4586 -6.6238 35 1 6.2690 2.6181 -6.2279 36 1 5.9577 -0.3190 -3.1485 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063094552.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:21 Heat of formation + Delta-G solvation = -22.230780 kcal Electronic energy + Delta-G solvation = -19430.409720 eV Core-core repulsion = 16326.247398 eV Total energy + Delta-G solvation = -3104.162322 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.78165 -38.55820 -36.46698 -35.31990 -33.09661 -32.46855 -30.71197 -29.62436 -27.30238 -26.03807 -25.21748 -22.68173 -22.25601 -20.70483 -18.34251 -16.93320 -16.63513 -16.20974 -15.72831 -15.45788 -15.16021 -14.46319 -14.25681 -13.76346 -13.43180 -13.11404 -12.83570 -12.61250 -12.44495 -11.85139 -11.74367 -11.54328 -11.45663 -11.34898 -11.28286 -11.04246 -10.85108 -10.83217 -10.66736 -10.26661 -10.17078 -9.24336 -9.08843 -8.79309 -8.58056 -8.42169 -7.59888 -6.07735 -4.15945 1.19243 1.29509 2.12928 3.27234 3.32486 3.33015 3.38607 3.57604 4.06420 4.39821 4.67263 4.79692 5.03068 5.21785 5.24305 5.25815 5.30886 5.44581 5.58863 5.67759 5.83397 5.92457 6.01248 6.21481 6.31132 6.35278 6.53719 6.74118 6.80102 6.83336 7.05859 7.41337 7.53110 7.70925 8.00975 8.19494 8.51986 8.82427 9.04992 9.50536 10.97536 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.021652 B = 0.004141 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.876597 B = 6759.467342 C = 7417.638611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.258 3.742 3 H 0.063 0.937 4 C -0.527 4.527 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.277 1.277 12 N -0.594 5.594 13 C 0.082 3.918 14 C 0.504 3.496 15 O -0.544 6.544 16 C -0.106 4.106 17 C -0.041 4.041 18 C -0.102 4.102 19 C -0.107 4.107 20 C -0.118 4.118 21 C -0.032 4.032 22 Cl -0.078 7.078 23 C -0.096 4.096 24 H 0.093 0.907 25 H 0.010 0.990 26 H 0.029 0.971 27 H 0.264 0.736 28 H 0.043 0.957 29 H 0.053 0.947 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.126 0.874 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.516 -3.578 -16.145 17.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.158 3.842 3 H 0.081 0.919 4 C -0.566 4.566 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.212 1.212 10 H -0.202 1.202 11 H -0.203 1.203 12 N -0.325 5.325 13 C -0.062 4.062 14 C 0.290 3.710 15 O -0.423 6.423 16 C -0.146 4.146 17 C -0.041 4.041 18 C -0.120 4.120 19 C -0.126 4.126 20 C -0.137 4.137 21 C -0.058 4.058 22 Cl -0.049 7.049 23 C -0.115 4.115 24 H 0.111 0.889 25 H 0.029 0.971 26 H 0.048 0.952 27 H 0.074 0.926 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.144 0.856 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.716 -2.835 -15.835 17.072 hybrid contribution 0.403 -0.559 0.994 1.210 sum 6.118 -3.394 -14.841 16.408 Atomic orbital electron populations 1.22078 0.98218 0.99349 1.00752 1.18930 0.90837 0.94545 0.79910 0.91932 1.21277 1.31924 1.13041 0.90331 0.92316 1.24894 0.94925 0.94966 0.98958 1.69871 1.36262 1.22540 1.23868 0.86556 0.79253 0.79555 0.82018 1.21156 1.20226 1.20251 1.48245 1.49078 1.11625 1.23564 1.21620 0.98766 0.83348 1.02452 1.20187 0.79509 0.87228 0.84045 1.90684 1.57976 1.16999 1.76604 1.20793 1.00164 0.98071 0.95552 1.19333 0.92731 0.96945 0.95131 1.21098 1.00029 0.95547 0.95343 1.21025 0.93011 0.98594 0.99929 1.20971 0.95322 0.99472 0.97888 1.20827 0.84771 1.00577 0.99633 1.98356 1.13136 1.97586 1.95869 1.20895 0.93263 0.98594 0.98735 0.88875 0.97086 0.95183 0.92620 0.93860 0.92792 0.90054 0.88229 0.88255 0.85571 0.85225 0.85280 0.85107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 8.97 37.16 0.33 -3.13 16 2 C 0.26 6.55 2.64 -69.09 -0.18 6.36 16 3 H 0.06 1.86 6.90 -51.93 -0.36 1.50 16 4 C -0.53 -14.14 7.99 -34.44 -0.28 -14.41 16 5 H 0.06 1.54 7.33 -52.49 -0.38 1.15 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.10 11.32 55.43 0.63 -24.48 16 8 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 9 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.59 -12.32 2.75 -175.26 -0.48 -12.80 16 13 C 0.08 1.31 9.24 59.85 0.55 1.86 16 14 C 0.50 10.10 7.67 -10.99 -0.08 10.01 16 15 O -0.54 -13.34 15.36 5.56 0.09 -13.26 16 16 C -0.11 -1.48 4.38 -29.04 -0.13 -1.61 16 17 C -0.04 -0.58 4.37 -104.63 -0.46 -1.04 16 18 C -0.10 -1.31 9.70 -39.58 -0.38 -1.70 16 19 C -0.11 -1.23 10.05 -39.59 -0.40 -1.63 16 20 C -0.12 -1.41 9.83 -39.55 -0.39 -1.79 16 21 C -0.03 -0.43 6.32 -39.50 -0.25 -0.68 16 22 Cl -0.08 -0.98 28.96 -51.86 -1.50 -2.48 16 23 C -0.10 -1.38 9.49 -39.55 -0.38 -1.76 16 24 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 25 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 27 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.67 6.44 -51.92 -0.33 0.34 16 30 H 0.08 1.40 7.02 -51.93 -0.36 1.03 16 31 H 0.10 1.20 7.34 -51.93 -0.38 0.82 16 32 H 0.10 1.12 8.05 -51.93 -0.42 0.70 16 33 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 34 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 35 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 36 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 318.84 15.07 4.80 4.80 Total: -1.00 -31.48 318.84 -8.24 -39.72 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -4.63 Total: 0.38 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -2.13 Total: -7.83 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 0.15 Total: -37.28 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.09 Total: -13.26 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -1.50 Total: -2.48 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.48 -8.24 -39.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094552.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.488 kcal (2) G-P(sol) polarization free energy of solvation -31.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds