Wall clock time and date at job start Tue Mar 31 2020 05:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.47190 * 2 1 4 4 C 1.50693 * 109.47058 * 120.00237 * 2 1 3 5 5 H 1.08005 * 120.00291 * 114.36412 * 4 2 1 6 6 C 1.37881 * 120.00259 * 294.36743 * 4 2 1 7 7 N 1.31514 * 120.00212 * 156.61898 * 6 4 2 8 8 Si 1.86795 * 119.99775 * 336.88788 * 6 4 2 9 9 H 1.48501 * 109.47165 * 179.72704 * 8 6 4 10 10 H 1.48500 * 109.47318 * 299.72681 * 8 6 4 11 11 H 1.48500 * 109.47076 * 59.72783 * 8 6 4 12 12 N 1.46498 * 109.46908 * 240.00405 * 2 1 3 13 13 C 1.34776 * 119.99973 * 85.00105 * 12 2 1 14 14 O 1.21275 * 120.00093 * 0.02562 * 13 12 2 15 15 C 1.50701 * 119.99964 * 179.97438 * 13 12 2 16 16 C 1.52998 * 109.47153 * 180.02562 * 15 13 12 17 17 C 1.50701 * 109.47153 * 180.02562 * 16 15 13 18 18 C 1.38243 * 120.00772 * 99.99306 * 17 16 15 19 19 C 1.38217 * 120.01205 * 179.97438 * 18 17 16 20 20 C 1.38266 * 120.02791 * 0.04854 * 19 18 17 21 21 C 1.38196 * 120.01267 * 359.97438 * 20 19 18 22 22 C 1.38329 * 120.00734 * 279.72314 * 17 16 15 23 23 Cl 1.73608 * 120.01160 * 359.97438 * 22 17 16 24 24 H 1.08994 * 109.47507 * 173.10064 * 1 2 3 25 25 H 1.09003 * 109.46967 * 293.10580 * 1 2 3 26 26 H 1.09007 * 109.46955 * 53.09808 * 1 2 3 27 27 H 0.97003 * 119.99433 * 355.20223 * 7 6 4 28 28 H 0.96999 * 119.99673 * 264.99382 * 12 2 1 29 29 H 1.09007 * 109.46983 * 299.99861 * 15 13 12 30 30 H 1.08994 * 109.47412 * 59.99878 * 15 13 12 31 31 H 1.09001 * 109.46935 * 299.99228 * 16 15 13 32 32 H 1.08991 * 109.47484 * 60.00005 * 16 15 13 33 33 H 1.07996 * 119.98931 * 0.02562 * 18 17 16 34 34 H 1.07995 * 119.98541 * 180.02562 * 19 18 17 35 35 H 1.07996 * 119.99221 * 179.97438 * 20 19 18 36 36 H 1.08000 * 120.00451 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5761 -1.6386 1.1339 6 6 1.7976 -0.1756 2.4794 7 7 1.8026 -0.9539 3.5395 8 14 1.4651 1.6531 2.6649 9 1 1.2392 1.9724 4.0975 10 1 2.6331 2.4218 2.1647 11 1 0.2588 2.0190 1.8800 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0181 -2.3571 14 8 1.8590 1.1587 -2.4114 15 6 2.6498 -0.7283 -3.5875 16 6 2.7018 0.2550 -4.7585 17 6 3.2040 -0.4553 -5.9891 18 6 2.3101 -0.8893 -6.9501 19 6 2.7706 -1.5403 -8.0790 20 6 4.1255 -1.7589 -8.2474 21 6 5.0201 -1.3260 -7.2871 22 6 4.5601 -0.6683 -6.1599 23 17 5.6840 -0.1169 -4.9570 24 1 -0.3634 -1.0201 -0.1234 25 1 -0.3633 0.4033 0.9453 26 1 -0.3633 0.6171 -0.8218 27 1 1.9020 -1.9133 3.4363 28 1 2.2490 -1.6317 -1.1527 29 1 3.6492 -1.1201 -3.3980 30 1 1.9777 -1.5505 -3.8327 31 1 1.7026 0.6471 -4.9483 32 1 3.3742 1.0770 -4.5132 33 1 1.2517 -0.7188 -6.8192 34 1 2.0719 -1.8787 -8.8297 35 1 4.4847 -2.2680 -9.1295 36 1 6.0784 -1.4964 -7.4189 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064333311.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:35 Heat of formation + Delta-G solvation = -40.178405 kcal Electronic energy + Delta-G solvation = -19007.571800 eV Core-core repulsion = 15902.631210 eV Total energy + Delta-G solvation = -3104.940589 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.81849 -38.88651 -36.55764 -35.08931 -33.96892 -32.43202 -30.99962 -30.34410 -28.97416 -25.03365 -24.54866 -22.94437 -21.57630 -20.48001 -19.48967 -17.76705 -17.26494 -16.32606 -16.09397 -15.36235 -15.24915 -14.74538 -14.07546 -14.01758 -13.58554 -13.39861 -13.00754 -12.87691 -12.58401 -12.17671 -12.02203 -11.79465 -11.69969 -11.61297 -11.48294 -11.32024 -10.85455 -10.79875 -10.47721 -10.09854 -9.82771 -9.28145 -9.13632 -9.07821 -8.82660 -8.28398 -8.13337 -6.58726 -4.19319 0.90484 1.00439 2.01113 3.29702 3.35438 3.41866 3.46943 3.62766 4.01455 4.45321 4.53366 4.56058 4.72274 4.99201 5.08193 5.12343 5.13240 5.27051 5.34849 5.51748 5.68388 5.77142 5.83260 5.97617 6.13591 6.19759 6.29966 6.41481 6.54808 6.57632 6.70171 6.99189 7.32065 7.43862 7.70326 8.25779 8.52252 8.72487 9.02161 9.46630 10.79590 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.030645 B = 0.003614 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.455839 B = 7745.291471 C = 8052.648857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.242 3.758 3 H 0.040 0.960 4 C -0.625 4.625 5 H 0.062 0.938 6 C 0.045 3.955 7 N -0.891 5.891 8 Si 1.034 2.966 9 H -0.283 1.283 10 H -0.281 1.281 11 H -0.274 1.274 12 N -0.704 5.704 13 C 0.502 3.498 14 O -0.559 6.559 15 C -0.136 4.136 16 C -0.068 4.068 17 C -0.067 4.067 18 C -0.105 4.105 19 C -0.115 4.115 20 C -0.117 4.117 21 C -0.110 4.110 22 C -0.036 4.036 23 Cl -0.062 7.062 24 H 0.042 0.958 25 H 0.058 0.942 26 H 0.028 0.972 27 H 0.270 0.730 28 H 0.393 0.607 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.132 0.868 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.741 -2.694 -23.298 23.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.139 3.861 3 H 0.058 0.942 4 C -0.662 4.662 5 H 0.080 0.920 6 C -0.162 4.162 7 N -0.523 5.523 8 Si 0.861 3.139 9 H -0.209 1.209 10 H -0.207 1.207 11 H -0.200 1.200 12 N -0.351 5.351 13 C 0.288 3.712 14 O -0.438 6.438 15 C -0.176 4.176 16 C -0.106 4.106 17 C -0.068 4.068 18 C -0.124 4.124 19 C -0.133 4.133 20 C -0.135 4.135 21 C -0.129 4.129 22 C -0.062 4.062 23 Cl -0.033 7.033 24 H 0.061 0.939 25 H 0.077 0.923 26 H 0.048 0.952 27 H 0.080 0.920 28 H 0.226 0.774 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.150 0.850 34 H 0.145 0.855 35 H 0.147 0.853 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.366 -0.626 -22.040 22.305 hybrid contribution 0.568 -1.828 -1.024 2.171 sum 3.934 -2.455 -23.064 23.526 Atomic orbital electron populations 1.22417 0.98991 0.99863 1.00087 1.18967 0.90460 0.94143 0.82531 0.94240 1.22025 1.41951 1.11169 0.91068 0.91988 1.25639 0.92967 1.05889 0.91744 1.70872 1.43139 1.06415 1.31872 0.84179 0.77784 0.75745 0.76204 1.20858 1.20667 1.19971 1.46302 1.65075 1.13736 1.10027 1.20471 0.78380 0.87526 0.84853 1.90637 1.51672 1.16148 1.85362 1.21630 1.03279 0.99304 0.93409 1.20389 1.03172 0.97360 0.89690 1.19928 0.91291 0.98380 0.97222 1.21111 0.99755 0.98095 0.93397 1.21250 0.95775 0.98545 0.97724 1.21093 0.93177 1.00288 0.98938 1.21062 1.00632 0.98298 0.92871 1.20923 0.90526 1.02114 0.92655 1.98396 1.61057 1.88244 1.55647 0.93861 0.92330 0.95242 0.91975 0.77449 0.89132 0.89359 0.89795 0.89388 0.84972 0.85476 0.85308 0.85057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.20 37.16 0.34 -3.23 16 2 C 0.24 5.94 2.16 -69.09 -0.15 5.80 16 3 H 0.04 1.05 6.15 -51.93 -0.32 0.74 16 4 C -0.62 -17.12 8.95 -34.44 -0.31 -17.43 16 5 H 0.06 1.77 7.96 -52.48 -0.42 1.35 16 6 C 0.05 1.28 5.19 -17.82 -0.09 1.19 16 7 N -0.89 -26.59 13.70 55.43 0.76 -25.83 16 8 Si 1.03 25.37 26.44 -169.99 -4.50 20.87 16 9 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.27 -6.36 6.14 56.52 0.35 -6.01 16 12 N -0.70 -14.48 5.07 -54.94 -0.28 -14.76 16 13 C 0.50 9.63 7.79 -10.98 -0.09 9.54 16 14 O -0.56 -12.63 15.64 5.56 0.09 -12.55 16 15 C -0.14 -1.91 5.64 -27.88 -0.16 -2.06 16 16 C -0.07 -0.90 4.09 -27.88 -0.11 -1.02 16 17 C -0.07 -0.76 5.14 -104.59 -0.54 -1.30 16 18 C -0.11 -0.99 9.67 -39.59 -0.38 -1.37 16 19 C -0.11 -0.91 10.05 -39.58 -0.40 -1.31 16 20 C -0.12 -0.91 10.05 -39.59 -0.40 -1.31 16 21 C -0.11 -1.01 9.83 -39.55 -0.39 -1.40 16 22 C -0.04 -0.40 6.31 -39.50 -0.25 -0.65 16 23 Cl -0.06 -0.76 26.66 -51.86 -1.38 -2.14 16 24 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 25 H 0.06 1.38 5.47 -51.93 -0.28 1.10 16 26 H 0.03 0.64 8.14 -51.92 -0.42 0.22 16 27 H 0.27 7.96 8.73 -40.82 -0.36 7.60 16 28 H 0.39 7.19 8.53 -40.82 -0.35 6.84 16 29 H 0.09 1.22 7.29 -51.92 -0.38 0.84 16 30 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.08 1.10 7.96 -51.93 -0.41 0.69 16 32 H 0.09 1.29 7.30 -51.93 -0.38 0.91 16 33 H 0.13 1.05 8.04 -52.49 -0.42 0.63 16 34 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 35 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 317.96 15.07 4.79 4.79 Total: -1.00 -31.68 317.96 -8.14 -39.82 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -4.71 Total: 4.33 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -2.92 Total: -14.54 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 0.48 Total: -40.59 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.09 Total: -12.55 kcal Atomic # 14 Polarization: 25.37 SS G_CDS: -4.50 Total: 20.87 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.38 Total: -2.14 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.68 -8.14 -39.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064333311.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.357 kcal (2) G-P(sol) polarization free energy of solvation -31.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds