Wall clock time and date at job start Tue Mar 31 2020 05:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46498 * 119.99801 * 2 1 4 4 C 1.50700 * 109.46924 * 269.99710 * 3 2 1 5 5 H 1.08007 * 120.00229 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00134 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99795 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00099 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47100 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47217 * 120.00107 * 8 6 4 11 11 H 1.48505 * 109.47328 * 240.00317 * 8 6 4 12 12 C 1.34774 * 119.99821 * 180.02562 * 2 1 3 13 13 O 1.21281 * 119.99751 * 179.97438 * 12 2 1 14 14 C 1.50699 * 120.00221 * 359.97438 * 12 2 1 15 15 C 1.52997 * 109.47140 * 180.02562 * 14 12 2 16 16 C 1.50702 * 109.47142 * 180.02562 * 15 14 12 17 17 C 1.38270 * 119.99101 * 270.27596 * 16 15 14 18 18 C 1.38215 * 120.02537 * 180.27948 * 17 16 15 19 19 C 1.38238 * 120.01126 * 359.44038 * 18 17 16 20 20 C 1.38325 * 119.98878 * 0.28199 * 19 18 17 21 21 Cl 1.73606 * 120.01335 * 179.97438 * 20 19 18 22 22 C 1.38193 * 119.99765 * 89.99998 * 16 15 14 23 23 H 1.09010 * 109.47074 * 270.00231 * 1 2 3 24 24 H 1.09005 * 109.47433 * 30.00102 * 1 2 3 25 25 H 1.08994 * 109.47271 * 150.00605 * 1 2 3 26 26 H 1.09001 * 109.47206 * 29.99802 * 3 2 1 27 27 H 1.08998 * 109.47088 * 150.00408 * 3 2 1 28 28 H 0.96995 * 119.99734 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.46471 * 60.00257 * 14 12 2 30 30 H 1.08998 * 109.47585 * 300.00439 * 14 12 2 31 31 H 1.08998 * 109.47471 * 60.00114 * 15 14 12 32 32 H 1.09000 * 109.47154 * 299.99976 * 15 14 12 33 33 H 1.07997 * 119.98420 * 0.02562 * 17 16 15 34 34 H 1.08002 * 119.99636 * 179.72646 * 18 17 16 35 35 H 1.07999 * 120.00577 * 180.25936 * 19 18 17 36 36 H 1.08003 * 120.00423 * 0.02562 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0974 1.0961 -2.2418 6 6 3.1260 2.8779 -1.6729 7 7 3.5532 3.6181 -0.6733 8 14 3.4367 3.4174 -3.4340 9 1 2.8588 2.4173 -4.3674 10 1 2.7986 4.7380 -3.6671 11 1 4.8992 3.5262 -3.6678 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 6 2.3796 -3.6352 -0.0005 16 6 1.6261 -4.9403 -0.0012 17 6 1.2751 -5.5363 1.1961 18 6 0.5891 -6.7362 1.1964 19 6 0.2434 -7.3353 -0.0005 20 6 0.5892 -6.7366 -1.1986 21 17 0.1559 -7.4887 -2.7021 22 6 1.2811 -5.5383 -1.1983 23 1 -0.3634 0.0000 1.0278 24 1 -0.3634 0.8900 -0.5139 25 1 -0.3633 -0.8900 -0.5137 26 1 1.6084 2.0284 0.5138 27 1 3.1499 1.1384 0.5138 28 1 4.0300 4.4440 -0.8506 29 1 0.7584 -2.5297 -0.8904 30 1 0.7590 -2.5303 0.8896 31 1 3.0063 -3.5775 0.8894 32 1 3.0063 -3.5775 -0.8905 33 1 1.5407 -5.0662 2.1314 34 1 0.3191 -7.2036 2.1318 35 1 -0.2963 -8.2708 -0.0002 36 1 1.5517 -5.0706 -2.1334 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067509367.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:25 Heat of formation + Delta-G solvation = -31.472333 kcal Electronic energy + Delta-G solvation = -18827.031927 eV Core-core repulsion = 15722.468862 eV Total energy + Delta-G solvation = -3104.563066 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.76025 -38.83697 -36.70799 -34.89142 -33.90255 -32.58500 -30.95496 -29.92785 -27.75345 -25.90130 -24.67369 -22.88133 -22.50119 -21.04747 -18.34937 -17.22745 -16.55495 -16.22769 -15.92762 -15.47644 -15.29529 -14.86463 -14.29357 -14.00003 -13.71351 -13.32129 -13.28993 -12.62956 -12.24090 -12.12643 -12.11637 -11.83744 -11.69350 -11.55639 -11.43402 -11.16724 -10.98269 -10.89274 -10.78532 -10.57840 -10.15943 -9.60957 -9.15353 -8.96416 -8.75342 -8.44118 -7.63993 -6.04691 -4.09407 0.94747 1.05184 1.91915 3.29621 3.36540 3.38801 3.40533 3.45802 3.98447 4.43959 4.55453 4.60922 4.84890 5.04947 5.10327 5.16781 5.25314 5.28986 5.36824 5.48732 5.60219 5.71851 5.81131 5.89426 5.96780 6.01768 6.11784 6.21755 6.25195 6.43278 6.60853 7.05576 7.44188 7.54374 7.91945 8.23364 8.42308 8.90283 9.09823 9.55869 11.03454 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.024188 B = 0.003319 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.318221 B = 8433.032240 C = 9068.365319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.604 5.604 3 C 0.244 3.756 4 C -0.526 4.526 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.502 3.498 13 O -0.543 6.543 14 C -0.133 4.133 15 C -0.067 4.067 16 C -0.060 4.060 17 C -0.113 4.113 18 C -0.106 4.106 19 C -0.121 4.121 20 C -0.032 4.032 21 Cl -0.076 7.076 22 C -0.108 4.108 23 H 0.044 0.956 24 H 0.073 0.927 25 H 0.057 0.943 26 H 0.031 0.969 27 H 0.044 0.956 28 H 0.263 0.737 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.638 -20.499 2.841 22.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.336 5.336 3 C 0.125 3.875 4 C -0.564 4.564 5 H 0.076 0.924 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.208 1.208 12 C 0.289 3.711 13 O -0.421 6.421 14 C -0.173 4.173 15 C -0.105 4.105 16 C -0.061 4.061 17 C -0.131 4.131 18 C -0.124 4.124 19 C -0.139 4.139 20 C -0.059 4.059 21 Cl -0.047 7.047 22 C -0.127 4.127 23 H 0.062 0.938 24 H 0.092 0.908 25 H 0.076 0.924 26 H 0.049 0.951 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.946 -20.360 2.747 22.407 hybrid contribution -0.036 0.355 -1.146 1.200 sum -8.982 -20.005 1.601 21.987 Atomic orbital electron populations 1.21639 0.81474 1.02591 1.00378 1.48172 1.06171 1.07924 1.71297 1.19290 0.92559 0.78168 0.97499 1.21480 1.36402 1.06224 0.92342 0.92428 1.24947 0.95377 0.96400 0.97462 1.69943 1.38464 1.14345 1.30670 0.86442 0.78099 0.78306 0.84569 1.19801 1.20959 1.20844 1.20324 0.88118 0.85155 0.77507 1.90669 1.13923 1.87297 1.50260 1.21667 0.98992 0.92869 1.03786 1.20394 0.96543 0.88520 1.05057 1.20014 0.97179 0.96598 0.92271 1.21239 0.98225 0.95471 0.98145 1.21103 0.98249 0.95563 0.97530 1.21015 1.01345 1.00702 0.90869 1.20929 1.02126 0.95715 0.87084 1.98372 1.91930 1.81771 1.32617 1.21044 0.98465 0.94022 0.99149 0.93775 0.90816 0.92419 0.95055 0.93840 0.92771 0.89391 0.89539 0.89752 0.89775 0.85213 0.85159 0.85227 0.84780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.30 10.24 59.85 0.61 1.92 16 2 N -0.60 -12.72 2.86 -182.95 -0.52 -13.24 16 3 C 0.24 6.41 5.16 -5.19 -0.03 6.38 16 4 C -0.53 -14.99 9.39 -34.44 -0.32 -15.31 16 5 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 7 N -0.90 -26.71 13.29 55.43 0.74 -25.98 16 8 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 9 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 12 C 0.50 10.17 7.67 -10.99 -0.08 10.09 16 13 O -0.54 -13.39 15.56 5.56 0.09 -13.31 16 14 C -0.13 -1.86 4.23 -27.89 -0.12 -1.98 16 15 C -0.07 -0.88 4.63 -27.88 -0.13 -1.01 16 16 C -0.06 -0.67 5.13 -104.63 -0.54 -1.20 16 17 C -0.11 -1.07 9.70 -39.58 -0.38 -1.46 16 18 C -0.11 -0.89 10.05 -39.59 -0.40 -1.29 16 19 C -0.12 -1.08 9.83 -39.55 -0.39 -1.47 16 20 C -0.03 -0.33 6.32 -39.50 -0.25 -0.58 16 21 Cl -0.08 -0.76 28.96 -51.86 -1.50 -2.26 16 22 C -0.11 -1.19 9.49 -39.55 -0.38 -1.57 16 23 H 0.04 0.59 8.14 -51.92 -0.42 0.17 16 24 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 25 H 0.06 0.73 6.44 -51.93 -0.33 0.40 16 26 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 27 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 28 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.09 1.12 7.40 -51.93 -0.38 0.74 16 30 H 0.09 1.02 8.11 -51.93 -0.42 0.60 16 31 H 0.08 1.13 8.05 -51.93 -0.42 0.71 16 32 H 0.08 1.20 8.04 -51.93 -0.42 0.78 16 33 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 36 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 LS Contribution 326.92 15.07 4.93 4.93 Total: -1.00 -32.92 326.92 -8.65 -41.57 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -4.86 Total: -2.78 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -2.50 Total: -5.85 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 0.21 Total: -39.22 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.09 Total: -13.31 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.50 Total: -2.26 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.92 -8.65 -41.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067509367.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.097 kcal (2) G-P(sol) polarization free energy of solvation -32.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds