Wall clock time and date at job start Tue Mar 31 2020 05:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46498 * 119.99801 * 2 1 4 4 C 1.50700 * 109.46924 * 269.99710 * 3 2 1 5 5 H 1.08007 * 120.00229 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00134 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99795 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00099 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.47100 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47217 * 120.00107 * 8 6 4 11 11 H 1.48505 * 109.47328 * 240.00317 * 8 6 4 12 12 C 1.34774 * 119.99821 * 180.02562 * 2 1 3 13 13 O 1.21281 * 119.99751 * 179.97438 * 12 2 1 14 14 C 1.50699 * 120.00221 * 359.97438 * 12 2 1 15 15 C 1.52997 * 109.47140 * 180.02562 * 14 12 2 16 16 C 1.50702 * 109.47142 * 180.02562 * 15 14 12 17 17 C 1.38270 * 119.99101 * 270.27596 * 16 15 14 18 18 C 1.38215 * 120.02537 * 180.27948 * 17 16 15 19 19 C 1.38238 * 120.01126 * 359.44038 * 18 17 16 20 20 C 1.38325 * 119.98878 * 0.28199 * 19 18 17 21 21 Cl 1.73606 * 120.01335 * 179.97438 * 20 19 18 22 22 C 1.38193 * 119.99765 * 89.99998 * 16 15 14 23 23 H 1.09010 * 109.47074 * 270.00231 * 1 2 3 24 24 H 1.09005 * 109.47433 * 30.00102 * 1 2 3 25 25 H 1.08994 * 109.47271 * 150.00605 * 1 2 3 26 26 H 1.09001 * 109.47206 * 29.99802 * 3 2 1 27 27 H 1.08998 * 109.47088 * 150.00408 * 3 2 1 28 28 H 0.96995 * 119.99734 * 179.97438 * 7 6 4 29 29 H 1.09004 * 109.46471 * 60.00257 * 14 12 2 30 30 H 1.08998 * 109.47585 * 300.00439 * 14 12 2 31 31 H 1.08998 * 109.47471 * 60.00114 * 15 14 12 32 32 H 1.09000 * 109.47154 * 299.99976 * 15 14 12 33 33 H 1.07997 * 119.98420 * 0.02562 * 17 16 15 34 34 H 1.08002 * 119.99636 * 179.72646 * 18 17 16 35 35 H 1.07999 * 120.00577 * 180.25936 * 19 18 17 36 36 H 1.08003 * 120.00423 * 0.02562 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0974 1.0961 -2.2418 6 6 3.1260 2.8779 -1.6729 7 7 3.5532 3.6181 -0.6733 8 14 3.4367 3.4174 -3.4340 9 1 2.8588 2.4173 -4.3674 10 1 2.7986 4.7380 -3.6671 11 1 4.8992 3.5262 -3.6678 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 6 2.3796 -3.6352 -0.0005 16 6 1.6261 -4.9403 -0.0012 17 6 1.2751 -5.5363 1.1961 18 6 0.5891 -6.7362 1.1964 19 6 0.2434 -7.3353 -0.0005 20 6 0.5892 -6.7366 -1.1986 21 17 0.1559 -7.4887 -2.7021 22 6 1.2811 -5.5383 -1.1983 23 1 -0.3634 0.0000 1.0278 24 1 -0.3634 0.8900 -0.5139 25 1 -0.3633 -0.8900 -0.5137 26 1 1.6084 2.0284 0.5138 27 1 3.1499 1.1384 0.5138 28 1 4.0300 4.4440 -0.8506 29 1 0.7584 -2.5297 -0.8904 30 1 0.7590 -2.5303 0.8896 31 1 3.0063 -3.5775 0.8894 32 1 3.0063 -3.5775 -0.8905 33 1 1.5407 -5.0662 2.1314 34 1 0.3191 -7.2036 2.1318 35 1 -0.2963 -8.2708 -0.0002 36 1 1.5517 -5.0706 -2.1334 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067509367.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:25 Heat of formation + Delta-G solvation = -50.322066 kcal Electronic energy + Delta-G solvation = -18827.849313 eV Core-core repulsion = 15722.468862 eV Total energy + Delta-G solvation = -3105.380452 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.85125 -40.12439 -37.47669 -36.61927 -35.03060 -34.60996 -31.68749 -31.08844 -29.51120 -27.33723 -26.12320 -24.19120 -23.59292 -21.99336 -19.91663 -18.71004 -18.17103 -17.45458 -17.09087 -16.92764 -16.29297 -16.25457 -16.04191 -14.83126 -14.71433 -14.56303 -14.38038 -14.04381 -13.75899 -13.57231 -13.43881 -13.32318 -13.01813 -12.81029 -12.54657 -12.51281 -12.34422 -12.21437 -12.20062 -11.89154 -11.72800 -11.67414 -10.65901 -10.61096 -9.83682 -9.60206 -9.40696 -8.23431 -6.38453 0.20932 0.31725 1.17295 1.35712 1.38041 1.49922 1.86226 2.32329 2.46054 2.70806 3.05917 3.58141 3.88486 3.97141 4.10620 4.16584 4.26283 4.39077 4.41589 4.48356 4.67765 4.69128 4.74830 4.94703 4.98332 4.99472 5.04886 5.20644 5.23211 5.29466 5.41978 5.56122 5.61702 5.84407 5.88888 6.05689 6.69448 6.80852 7.27798 7.50168 8.83770 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.024188 B = 0.003319 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.318221 B = 8433.032240 C = 9068.365319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.613 5.613 3 C 0.258 3.742 4 C -0.543 4.543 5 H 0.053 0.947 6 C 0.006 3.994 7 N -0.929 5.929 8 Si 0.968 3.032 9 H -0.267 1.267 10 H -0.268 1.268 11 H -0.281 1.281 12 C 0.492 3.508 13 O -0.599 6.599 14 C -0.115 4.115 15 C -0.060 4.060 16 C -0.069 4.069 17 C -0.114 4.114 18 C -0.100 4.100 19 C -0.118 4.118 20 C -0.044 4.044 21 Cl -0.078 7.078 22 C -0.120 4.120 23 H 0.072 0.928 24 H 0.063 0.937 25 H 0.094 0.906 26 H 0.023 0.977 27 H -0.002 1.002 28 H 0.267 0.733 29 H 0.107 0.893 30 H 0.119 0.881 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.145 0.855 34 H 0.161 0.839 35 H 0.150 0.850 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.623 -22.171 2.741 25.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.344 5.344 3 C 0.136 3.864 4 C -0.582 4.582 5 H 0.071 0.929 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.793 3.207 9 H -0.191 1.191 10 H -0.193 1.193 11 H -0.207 1.207 12 C 0.281 3.719 13 O -0.481 6.481 14 C -0.154 4.154 15 C -0.098 4.098 16 C -0.069 4.069 17 C -0.132 4.132 18 C -0.118 4.118 19 C -0.137 4.137 20 C -0.070 4.070 21 Cl -0.049 7.049 22 C -0.139 4.139 23 H 0.090 0.910 24 H 0.082 0.918 25 H 0.112 0.888 26 H 0.041 0.959 27 H 0.016 0.984 28 H 0.076 0.924 29 H 0.125 0.875 30 H 0.138 0.862 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.162 0.838 34 H 0.179 0.821 35 H 0.167 0.833 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.986 -22.050 2.650 24.778 hybrid contribution 0.568 0.826 -1.051 1.452 sum -10.417 -21.224 1.600 23.697 Atomic orbital electron populations 1.21938 0.77875 1.03938 1.02653 1.48224 1.08439 1.06482 1.71257 1.18749 0.91118 0.80578 0.95952 1.21753 1.36781 1.06528 0.93113 0.92910 1.25879 0.94915 0.96436 1.02037 1.70057 1.38976 1.14837 1.32994 0.85357 0.77908 0.78419 0.79057 1.19145 1.19333 1.20705 1.21472 0.87874 0.86743 0.75783 1.90635 1.16694 1.88233 1.52561 1.21632 0.98746 0.88927 1.06127 1.20238 0.96313 0.89613 1.03670 1.19772 0.98115 0.95940 0.93107 1.21459 0.97821 0.95885 0.98000 1.21445 0.96943 0.94818 0.98551 1.21335 1.00671 1.01212 0.90475 1.21048 1.02589 0.95750 0.87637 1.98369 1.91930 1.81698 1.32925 1.21050 0.99161 0.94662 0.99039 0.90959 0.91768 0.88798 0.95914 0.98432 0.92376 0.87451 0.86250 0.90575 0.91949 0.83765 0.82103 0.83276 0.85377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.28 10.24 127.77 1.31 3.59 16 2 N -0.61 -25.95 2.86 -851.12 -2.43 -28.38 16 3 C 0.26 14.07 5.16 85.63 0.44 14.51 16 4 C -0.54 -31.74 9.39 25.60 0.24 -31.50 16 5 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 6 C 0.01 0.36 5.46 84.66 0.46 0.82 16 7 N -0.93 -56.70 13.29 21.45 0.28 -56.42 16 8 Si 0.97 45.33 29.54 68.60 2.03 47.35 16 9 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 10 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 12 C 0.49 20.08 7.67 87.66 0.67 20.75 16 13 O -0.60 -30.88 15.56 -3.03 -0.05 -30.93 16 14 C -0.11 -3.01 4.23 29.85 0.13 -2.88 16 15 C -0.06 -1.55 4.63 29.85 0.14 -1.41 16 16 C -0.07 -1.41 5.13 -19.87 -0.10 -1.51 16 17 C -0.11 -1.83 9.70 22.27 0.22 -1.62 16 18 C -0.10 -1.30 10.05 22.26 0.22 -1.07 16 19 C -0.12 -1.76 9.83 22.29 0.22 -1.54 16 20 C -0.04 -0.82 6.32 22.32 0.14 -0.68 16 21 Cl -0.08 -1.45 28.96 -2.72 -0.08 -1.53 16 22 C -0.12 -2.51 9.49 22.29 0.21 -2.30 16 23 H 0.07 1.72 8.14 -2.38 -0.02 1.71 16 24 H 0.06 2.00 8.07 -2.38 -0.02 1.98 16 25 H 0.09 2.06 6.44 -2.39 -0.02 2.05 16 26 H 0.02 1.26 8.07 -2.39 -0.02 1.24 16 27 H 0.00 -0.15 7.42 -2.39 -0.02 -0.17 16 28 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 29 H 0.11 2.45 7.40 -2.39 -0.02 2.43 16 30 H 0.12 2.39 8.11 -2.39 -0.02 2.37 16 31 H 0.08 2.05 8.05 -2.39 -0.02 2.03 16 32 H 0.06 1.84 8.04 -2.39 -0.02 1.82 16 33 H 0.14 1.88 8.06 -2.91 -0.02 1.85 16 34 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 35 H 0.15 1.60 8.06 -2.91 -0.02 1.57 16 36 H 0.13 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -74.61 326.92 5.12 -69.49 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: 1.07 Total: 5.25 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: 4.30 Total: -4.83 kcal Atomic # 7 Polarization: -82.65 SS G_CDS: -2.15 Total: -84.80 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -0.05 Total: -30.93 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -0.08 Total: -1.53 kcal Total: -74.61 5.12 -69.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067509367.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.164 kcal (2) G-P(sol) polarization free energy of solvation -74.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds