Wall clock time and date at job start Tue Mar 31 2020 05:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46506 * 109.46887 * 2 1 4 4 C 1.36752 * 120.00361 * 264.16598 * 3 2 1 5 5 H 1.08000 * 120.00149 * 142.16124 * 4 3 2 6 6 C 1.39097 * 119.99859 * 322.16346 * 4 3 2 7 7 N 1.31343 * 119.99732 * 338.01180 * 6 4 3 8 8 Si 1.86792 * 120.00039 * 158.00979 * 6 4 3 9 9 H 1.48503 * 109.46915 * 59.99744 * 8 6 4 10 10 H 1.48497 * 109.47454 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47163 * 300.00243 * 8 6 4 12 12 C 1.34783 * 119.99762 * 84.17059 * 3 2 1 13 13 O 1.21779 * 119.99702 * 180.02562 * 12 3 2 14 14 C 1.41789 * 120.00013 * 359.97438 * 12 3 2 15 15 C 1.35141 * 120.00160 * 180.02562 * 14 12 3 16 16 C 1.46913 * 120.00248 * 179.72562 * 15 14 12 17 17 C 1.40164 * 120.21156 * 310.00422 * 16 15 14 18 18 F 1.35107 * 120.10922 * 359.97438 * 17 16 15 19 19 C 1.38138 * 119.77904 * 179.69801 * 17 16 15 20 20 C 1.38360 * 120.21524 * 0.59689 * 19 17 16 21 21 C 1.38368 * 120.43124 * 359.67956 * 20 19 17 22 22 C 1.38139 * 120.21668 * 0.02562 * 21 20 19 23 23 F 1.35097 * 120.11299 * 180.02562 * 22 21 20 24 24 H 1.09005 * 109.46751 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47657 * 299.99888 * 1 2 3 26 26 H 1.09003 * 109.46805 * 60.00354 * 1 2 3 27 27 H 1.09000 * 109.47344 * 240.00225 * 2 1 3 28 28 H 1.08999 * 109.47520 * 119.99540 * 2 1 3 29 29 H 0.97001 * 119.99714 * 179.97438 * 7 6 4 30 30 H 1.08000 * 120.00000 * 0.02562 * 14 12 3 31 31 H 1.08000 * 119.99840 * 0.02562 * 15 14 12 32 32 H 1.08004 * 119.89552 * 180.29768 * 19 17 16 33 33 H 1.07997 * 119.78876 * 179.69393 * 20 19 17 34 34 H 1.07998 * 119.89173 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3597 1.9859 -1.1781 5 1 2.1341 3.0305 -1.3342 6 6 2.9974 1.2555 -2.1754 7 7 3.6519 0.1586 -1.8695 8 14 2.9228 1.8345 -3.9498 9 1 3.5259 3.1875 -4.0547 10 1 3.6770 0.8888 -4.8112 11 1 1.5068 1.8879 -4.3940 12 6 2.1311 2.0561 1.1612 13 8 2.5365 3.2045 1.1612 14 6 1.7767 1.4294 2.3827 15 6 1.8893 2.1062 3.5470 16 6 1.5164 1.4589 4.8121 17 6 0.2796 0.8110 4.9350 18 9 -0.5759 0.7794 3.8898 19 6 -0.0593 0.1998 6.1266 20 6 0.8123 0.2366 7.2005 21 6 2.0330 0.8787 7.0907 22 6 2.3927 1.4905 5.9056 23 9 3.5853 2.1164 5.8005 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 4.0963 -0.3509 -2.5650 30 1 1.4167 0.4112 2.3827 31 1 2.2489 3.1246 3.5470 32 1 -1.0098 -0.3041 6.2219 33 1 0.5382 -0.2393 8.1305 34 1 2.7069 0.9017 7.9344 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068240614.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:27 Heat of formation + Delta-G solvation = -73.480024 kcal Electronic energy + Delta-G solvation = -21508.550156 eV Core-core repulsion = 17850.368820 eV Total energy + Delta-G solvation = -3658.181336 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.097 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.94903 -48.93263 -39.00088 -38.53391 -35.15771 -33.65834 -32.11514 -30.44732 -29.65060 -29.42629 -25.63539 -23.76251 -22.83108 -22.32739 -20.98365 -18.41658 -18.08891 -17.26347 -16.83051 -16.51793 -15.86756 -15.62002 -15.59102 -15.23667 -15.02321 -14.39570 -14.29098 -13.76995 -13.54950 -13.01309 -12.89472 -12.81109 -12.19946 -12.15306 -11.88922 -11.79905 -11.64814 -11.26835 -11.06510 -10.88908 -10.49323 -10.39212 -10.10863 -9.65373 -8.96944 -8.88174 -8.46845 -8.28802 -7.49340 -6.41493 -3.97486 0.64626 0.87114 1.99705 3.19156 3.23009 3.26461 3.28155 3.77974 4.10747 4.31965 4.42183 4.50024 4.66124 4.72433 4.94949 5.00494 5.13750 5.58783 5.63983 5.74731 5.79850 5.87366 5.93372 5.98966 6.10769 6.21024 6.33172 6.51991 6.65285 6.74570 6.84848 6.89377 7.18772 7.51999 8.23304 8.48842 9.16302 9.34586 10.01069 10.62335 Molecular weight = 281.10amu Principal moments of inertia in cm(-1) A = 0.028591 B = 0.004444 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.110818 B = 6298.985589 C = 6821.093172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.098 3.902 3 N -0.422 5.422 4 C -0.306 4.306 5 H 0.094 0.906 6 C 0.039 3.961 7 N -0.859 5.859 8 Si 0.920 3.080 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.272 1.272 12 C 0.470 3.530 13 O -0.589 6.589 14 C -0.131 4.131 15 C -0.101 4.101 16 C -0.109 4.109 17 C 0.133 3.867 18 F -0.122 7.122 19 C -0.164 4.164 20 C -0.070 4.070 21 C -0.165 4.165 22 C 0.135 3.865 23 F -0.124 7.124 24 H 0.051 0.949 25 H 0.047 0.953 26 H 0.057 0.943 27 H 0.105 0.895 28 H 0.050 0.950 29 H 0.271 0.729 30 H 0.117 0.883 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.939 -4.879 15.265 17.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.026 4.026 3 N -0.138 5.138 4 C -0.434 4.434 5 H 0.111 0.889 6 C -0.167 4.167 7 N -0.496 5.496 8 Si 0.746 3.254 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.197 1.197 12 C 0.262 3.738 13 O -0.475 6.475 14 C -0.152 4.152 15 C -0.122 4.122 16 C -0.111 4.111 17 C 0.114 3.886 18 F -0.101 7.101 19 C -0.183 4.183 20 C -0.088 4.088 21 C -0.184 4.184 22 C 0.116 3.884 23 F -0.102 7.102 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.123 0.877 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.135 0.865 31 H 0.159 0.841 32 H 0.160 0.840 33 H 0.159 0.841 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.606 -4.477 15.038 17.024 hybrid contribution 0.086 0.072 -1.063 1.069 sum -6.520 -4.404 13.974 16.037 Atomic orbital electron populations 1.22240 0.97722 1.00540 1.01892 1.21565 0.92021 0.85425 1.03618 1.43509 1.53403 1.11593 1.05332 1.19446 1.36372 0.97312 0.90316 0.88866 1.25464 0.93920 0.96459 1.00857 1.69937 1.28411 1.17116 1.34125 0.86100 0.78623 0.78921 0.81751 1.19534 1.20859 1.19699 1.17016 0.84545 0.88199 0.83999 1.90653 1.51475 1.18409 1.86997 1.22486 0.98625 1.00097 0.94029 1.21797 1.01062 1.00210 0.89133 1.19203 0.93981 1.02350 0.95599 1.17583 0.87481 0.98552 0.85029 1.91563 1.68330 1.94261 1.55911 1.21112 1.02198 1.02935 0.92066 1.20841 0.92311 0.97233 0.98420 1.21113 0.98921 1.01351 0.97007 1.17562 0.81774 0.95516 0.93571 1.91549 1.42492 1.79646 1.96533 0.92977 0.93434 0.92345 0.87656 0.93144 0.91904 0.86520 0.84148 0.84034 0.84105 0.84054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.09 10.05 37.16 0.37 -2.72 16 2 C 0.10 2.18 5.28 -4.04 -0.02 2.16 16 3 N -0.42 -11.09 2.52 -118.00 -0.30 -11.38 16 4 C -0.31 -8.64 8.88 -15.04 -0.13 -8.77 16 5 H 0.09 2.74 7.78 -52.49 -0.41 2.33 16 6 C 0.04 1.03 4.87 -17.44 -0.09 0.95 16 7 N -0.86 -23.25 11.61 55.50 0.64 -22.61 16 8 Si 0.92 20.51 29.61 -169.99 -5.03 15.47 16 9 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 12 C 0.47 12.31 7.36 -14.90 -0.11 12.20 16 13 O -0.59 -17.41 15.98 5.12 0.08 -17.33 16 14 C -0.13 -2.79 7.33 -39.33 -0.29 -3.07 16 15 C -0.10 -1.93 8.75 -37.17 -0.33 -2.25 16 16 C -0.11 -1.69 5.66 -104.94 -0.59 -2.28 16 17 C 0.13 1.82 7.12 -38.90 -0.28 1.54 16 18 F -0.12 -1.86 15.86 2.25 0.04 -1.82 16 19 C -0.16 -1.63 10.01 -39.57 -0.40 -2.03 16 20 C -0.07 -0.58 10.03 -39.49 -0.40 -0.98 16 21 C -0.16 -1.64 10.01 -39.57 -0.40 -2.03 16 22 C 0.14 1.85 7.29 -38.89 -0.28 1.57 16 23 F -0.12 -1.88 16.84 2.25 0.04 -1.85 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.05 0.87 7.47 -51.93 -0.39 0.48 16 26 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.11 2.54 5.65 -51.93 -0.29 2.24 16 28 H 0.05 1.05 6.43 -51.93 -0.33 0.71 16 29 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 30 H 0.12 2.24 5.58 -52.49 -0.29 1.95 16 31 H 0.14 2.86 7.45 -52.49 -0.39 2.47 16 32 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 33 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 305.49 15.07 4.60 4.60 Total: -1.00 -32.06 305.49 -6.21 -38.27 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -3.36 Total: 2.37 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -2.93 Total: -5.73 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: 0.35 Total: -33.99 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: 0.08 Total: -17.33 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.07 Total: -3.66 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.47 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -32.06 -6.21 -38.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068240614.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.209 kcal (2) G-P(sol) polarization free energy of solvation -32.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds