Wall clock time and date at job start Tue Mar 31 2020 05:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.47032 * 2 1 4 4 S 1.81398 * 109.46991 * 240.00021 * 2 1 3 5 5 C 1.76199 * 103.00303 * 65.00063 * 4 2 1 6 6 C 1.39390 * 120.10292 * 180.02562 * 5 4 2 7 7 N 1.31904 * 119.88560 * 179.97438 * 6 5 4 8 8 C 1.32294 * 120.09035 * 0.02562 * 7 6 5 9 9 C 1.38158 * 120.20928 * 0.02562 * 8 7 6 10 10 N 1.32241 * 120.11437 * 359.97438 * 9 8 7 11 11 C 1.50701 * 109.47101 * 119.99903 * 2 1 3 12 12 O 1.21282 * 120.00001 * 100.00463 * 11 2 1 13 13 N 1.34771 * 119.99808 * 279.99656 * 11 2 1 14 14 C 1.46503 * 120.00566 * 0.02562 * 13 11 2 15 15 C 1.46500 * 120.00034 * 179.97438 * 13 11 2 16 16 C 1.50702 * 109.47098 * 90.00447 * 15 13 11 17 17 H 1.07999 * 120.00033 * 0.02562 * 16 15 13 18 18 C 1.37872 * 120.00117 * 180.02562 * 16 15 13 19 19 N 1.31517 * 120.00362 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99966 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47288 * 59.99827 * 20 18 16 22 22 H 1.48503 * 109.47182 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47083 * 299.99432 * 20 18 16 24 24 H 1.08997 * 109.46438 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46725 * 300.00205 * 1 2 3 26 26 H 1.08994 * 109.46779 * 60.00298 * 1 2 3 27 27 H 1.08000 * 120.05788 * 359.97438 * 6 5 4 28 28 H 1.08007 * 119.89182 * 179.97438 * 8 7 6 29 29 H 1.08004 * 119.94097 * 179.97438 * 9 8 7 30 30 H 1.09001 * 109.47084 * 89.99223 * 14 13 11 31 31 H 1.08994 * 109.47401 * 210.00109 * 14 13 11 32 32 H 1.09000 * 109.46529 * 329.99884 * 14 13 11 33 33 H 1.08998 * 109.47362 * 210.00512 * 15 13 11 34 34 H 1.08997 * 109.47030 * 330.00565 * 15 13 11 35 35 H 0.97001 * 120.00296 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 16 2.1347 -0.8551 -1.4811 5 6 1.5828 0.1846 -2.7922 6 6 1.8631 -0.1509 -4.1158 7 7 1.4474 0.6303 -5.0940 8 6 0.7661 1.7307 -4.8201 9 6 0.4870 2.0674 -3.5096 10 7 0.8998 1.2902 -2.5225 11 6 2.0324 -0.7104 1.2305 12 8 2.4066 -1.8616 1.1558 13 7 2.0660 -0.0663 2.4139 14 6 1.6137 1.3242 2.5043 15 6 2.5538 -0.7570 3.6102 16 6 4.0405 -0.5475 3.7401 17 1 4.5691 0.0416 3.0053 18 6 4.7259 -1.1079 4.7970 19 7 4.0823 -1.8249 5.6922 20 14 6.5686 -0.8475 4.9584 21 1 6.8551 0.6049 5.0748 22 1 7.0632 -1.5478 6.1710 23 1 7.2525 -1.3924 3.7582 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 2.4196 -1.0489 -4.3400 28 1 0.4276 2.3682 -5.6236 29 1 -0.0692 2.9670 -3.2909 30 1 0.5474 1.3455 2.7297 31 1 2.1627 1.8342 3.2957 32 1 1.7943 1.8274 1.5544 33 1 2.0521 -0.3565 4.4910 34 1 2.3432 -1.8231 3.5254 35 1 4.5644 -2.2188 6.4360 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074790087.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:55 Heat of formation + Delta-G solvation = 19.938244 kcal Electronic energy + Delta-G solvation = -19242.250705 eV Core-core repulsion = 16174.253426 eV Total energy + Delta-G solvation = -3067.997278 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.03070 -39.20060 -34.96423 -34.58988 -33.20575 -32.22892 -31.72484 -27.84780 -26.03417 -25.00375 -24.68955 -24.47314 -22.43912 -19.11211 -17.95212 -17.67061 -16.99135 -16.78414 -16.45588 -15.62422 -15.11677 -14.94668 -14.69534 -14.27542 -13.91769 -13.42342 -13.15364 -12.99587 -12.29531 -12.19673 -12.05763 -11.88404 -11.79775 -11.69108 -11.39145 -11.23406 -10.93732 -10.61656 -10.22621 -10.20775 -10.19013 -9.69385 -9.36769 -9.07260 -8.46440 -7.78115 -7.66196 -6.07769 -4.13024 0.46919 0.86123 1.22853 2.09427 3.23511 3.30893 3.35262 3.39054 3.40327 3.80920 4.04120 4.13462 4.27800 4.42068 4.84395 4.86919 4.96003 4.97685 5.11215 5.22382 5.26988 5.55884 5.68606 5.78462 5.87022 5.98470 6.09752 6.21261 6.91385 6.93445 7.35693 7.42892 7.45901 7.87540 8.17501 8.24560 8.78612 8.94840 9.52170 11.00383 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.029724 B = 0.003940 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.762503 B = 7104.216474 C = 7394.076414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 H 0.117 0.883 4 S 0.030 5.970 5 C 0.058 3.942 6 C 0.071 3.929 7 N -0.422 5.422 8 C 0.025 3.975 9 C 0.068 3.932 10 N -0.448 5.448 11 C 0.523 3.477 12 O -0.526 6.526 13 N -0.591 5.591 14 C 0.079 3.921 15 C 0.246 3.754 16 C -0.530 4.530 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.894 5.894 20 Si 0.899 3.101 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.275 1.275 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.174 0.826 28 H 0.168 0.832 29 H 0.171 0.829 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.035 0.965 34 H 0.046 0.954 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.226 9.254 -16.602 21.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.238 4.238 3 H 0.135 0.865 4 S 0.272 5.728 5 C -0.193 4.193 6 C -0.098 4.098 7 N -0.137 5.137 8 C -0.138 4.138 9 C -0.095 4.095 10 N -0.167 5.167 11 C 0.307 3.693 12 O -0.403 6.403 13 N -0.323 5.323 14 C -0.065 4.065 15 C 0.128 3.872 16 C -0.569 4.569 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.533 5.533 20 Si 0.726 3.274 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.201 1.201 24 H 0.086 0.914 25 H 0.089 0.911 26 H 0.097 0.903 27 H 0.191 0.809 28 H 0.186 0.814 29 H 0.188 0.812 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.351 7.472 -16.346 19.818 hybrid contribution 0.285 1.607 0.270 1.654 sum -8.066 9.079 -16.075 20.147 Atomic orbital electron populations 1.21950 0.90547 1.03472 1.03738 1.23670 1.01564 1.03938 0.94614 0.86507 1.86365 1.66120 1.26964 0.93389 1.24843 0.98092 0.97146 0.99265 1.23369 0.98930 1.00064 0.87389 1.68427 1.06803 1.03435 1.35007 1.23602 0.97516 0.95239 0.97394 1.23753 0.96774 0.98927 0.90049 1.68951 1.09283 1.03184 1.35289 1.19389 0.79480 0.86868 0.83609 1.90718 1.47977 1.17044 1.84573 1.48059 1.61953 1.12651 1.09649 1.21757 0.98994 0.83404 1.02310 1.19359 0.94311 0.93747 0.79833 1.21377 0.92953 1.32934 1.09596 0.92438 1.24927 0.98730 0.94809 0.95519 1.69919 1.36262 1.33716 1.13413 0.86543 0.84989 0.78251 0.77575 1.20228 1.21115 1.20075 0.91442 0.91060 0.90297 0.80927 0.81447 0.81221 0.93342 0.90411 0.92335 0.94685 0.93641 0.92576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 8.95 37.16 0.33 -1.48 16 2 C -0.11 -1.65 1.96 -27.88 -0.05 -1.71 16 3 H 0.12 1.70 6.31 -51.92 -0.33 1.38 16 4 S 0.03 0.45 20.60 -107.50 -2.21 -1.77 16 5 C 0.06 0.73 6.85 -16.74 -0.11 0.62 16 6 C 0.07 0.82 10.99 -17.09 -0.19 0.63 16 7 N -0.42 -4.68 10.49 -12.87 -0.13 -4.82 16 8 C 0.02 0.21 11.21 -17.38 -0.19 0.02 16 9 C 0.07 0.59 11.21 -17.41 -0.20 0.40 16 10 N -0.45 -5.28 7.65 -11.91 -0.09 -5.37 16 11 C 0.52 10.86 6.85 -10.99 -0.08 10.78 16 12 O -0.53 -13.15 15.62 5.56 0.09 -13.07 16 13 N -0.59 -12.39 2.86 -182.96 -0.52 -12.91 16 14 C 0.08 1.23 9.56 59.85 0.57 1.81 16 15 C 0.25 6.38 5.16 -5.19 -0.03 6.35 16 16 C -0.53 -14.96 9.39 -34.44 -0.32 -15.28 16 17 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 18 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 19 N -0.89 -26.43 13.29 55.43 0.74 -25.70 16 20 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 24 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.07 0.86 6.94 -51.93 -0.36 0.50 16 26 H 0.08 0.95 5.98 -51.93 -0.31 0.64 16 27 H 0.17 1.65 8.06 -52.49 -0.42 1.23 16 28 H 0.17 0.84 8.06 -52.48 -0.42 0.42 16 29 H 0.17 0.87 8.06 -52.48 -0.42 0.45 16 30 H 0.05 0.64 7.66 -51.93 -0.40 0.24 16 31 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 32 H 0.06 0.77 5.94 -51.93 -0.31 0.46 16 33 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16 34 H 0.05 1.32 7.42 -51.93 -0.39 0.94 16 35 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 313.77 15.07 4.73 4.73 Total: -1.00 -33.83 313.77 -6.96 -40.79 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -4.16 Total: -2.50 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -0.37 Total: 3.81 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: -0.01 Total: -48.80 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.09 Total: -13.07 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 0.45 SS G_CDS: -2.21 Total: -1.77 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.83 -6.96 -40.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074790087.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.731 kcal (2) G-P(sol) polarization free energy of solvation -33.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds