Wall clock time and date at job start Tue Mar 31 2020 05:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46755 * 2 1 4 4 S 1.81402 * 109.47304 * 119.99787 * 2 1 3 5 5 C 1.76198 * 102.99729 * 295.00076 * 4 2 1 6 6 C 1.39401 * 120.09939 * 180.02562 * 5 4 2 7 7 N 1.31894 * 119.88500 * 179.74724 * 6 5 4 8 8 C 1.32295 * 120.09572 * 0.48778 * 7 6 5 9 9 C 1.38166 * 120.20411 * 359.48560 * 8 7 6 10 10 N 1.32248 * 120.11022 * 0.28083 * 9 8 7 11 11 C 1.50702 * 109.47132 * 239.99731 * 2 1 3 12 12 O 1.21274 * 120.00070 * 265.00235 * 11 2 1 13 13 N 1.34774 * 119.99542 * 84.99574 * 11 2 1 14 14 C 1.46496 * 120.00502 * 0.02562 * 13 11 2 15 15 C 1.46510 * 119.99934 * 179.97438 * 13 11 2 16 16 C 1.50704 * 109.46726 * 90.00256 * 15 13 11 17 17 H 1.07996 * 119.99801 * 0.02562 * 16 15 13 18 18 C 1.37879 * 119.99361 * 180.02562 * 16 15 13 19 19 N 1.31508 * 120.00246 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99519 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47172 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47287 * 119.99548 * 20 18 16 23 23 H 1.48498 * 109.47126 * 239.99915 * 20 18 16 24 24 H 1.08993 * 109.47172 * 60.00401 * 1 2 3 25 25 H 1.09004 * 109.47340 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47365 * 299.99887 * 1 2 3 27 27 H 1.08001 * 120.05744 * 359.97438 * 6 5 4 28 28 H 1.08002 * 119.90175 * 179.77142 * 8 7 6 29 29 H 1.07995 * 119.94477 * 180.26003 * 9 8 7 30 30 H 1.09001 * 109.47324 * 89.99721 * 14 13 11 31 31 H 1.08998 * 109.47439 * 209.99821 * 14 13 11 32 32 H 1.08993 * 109.47108 * 330.00010 * 14 13 11 33 33 H 1.08993 * 109.47127 * 210.00632 * 15 13 11 34 34 H 1.09001 * 109.46792 * 330.00821 * 15 13 11 35 35 H 0.96998 * 119.99692 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1347 -0.8551 1.4812 5 6 1.5828 0.1847 2.7921 6 6 1.8640 -0.1501 4.1158 7 7 1.4531 0.6339 5.0936 8 6 0.7668 1.7313 4.8200 9 6 0.4863 2.0672 3.5095 10 7 0.8984 1.2894 2.5225 11 6 2.0324 -0.7105 -1.2304 12 8 2.3207 -1.8872 -1.1760 13 7 2.1610 -0.0381 -2.3914 14 6 1.8130 1.3834 -2.4571 15 6 2.6498 -0.7286 -3.5875 16 6 1.4831 -1.3091 -4.3445 17 1 0.4781 -1.1765 -3.9721 18 6 1.6990 -2.0093 -5.5125 19 7 2.9228 -2.1703 -5.9661 20 14 0.2528 -2.7282 -6.4512 21 1 -1.0092 -2.4092 -5.7363 22 1 0.2098 -2.1454 -7.8163 23 1 0.4080 -4.2020 -6.5467 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 2.4206 -1.0481 4.3400 28 1 0.4287 2.3691 5.6234 29 1 -0.0706 2.9662 3.2908 30 1 2.6920 1.9839 -2.2229 31 1 1.4642 1.6261 -3.4609 32 1 1.0239 1.5980 -1.7365 33 1 3.1803 -0.0208 -4.2243 34 1 3.3269 -1.5304 -3.2929 35 1 3.0745 -2.6626 -6.7879 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074790090.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:56 Heat of formation + Delta-G solvation = 19.124044 kcal Electronic energy + Delta-G solvation = -19240.790495 eV Core-core repulsion = 16172.757910 eV Total energy + Delta-G solvation = -3068.032585 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.04781 -39.19696 -34.95813 -34.60530 -33.18686 -32.24315 -31.74130 -27.85603 -26.05271 -25.01875 -24.69693 -24.39243 -22.46458 -19.12648 -17.96293 -17.68355 -17.00331 -16.68191 -16.56523 -15.56437 -15.12325 -14.93892 -14.69642 -14.31560 -13.97546 -13.45592 -13.06527 -12.99498 -12.24458 -12.19439 -12.08992 -11.90154 -11.74212 -11.71905 -11.38231 -11.23880 -10.90681 -10.64288 -10.27696 -10.21987 -10.19066 -9.66591 -9.38566 -9.07193 -8.47682 -7.78074 -7.68344 -6.08363 -4.13416 0.45172 0.84662 1.20461 2.06455 3.22306 3.27720 3.35751 3.38656 3.40019 3.83634 4.02527 4.12121 4.25980 4.41104 4.83675 4.85976 4.96046 4.99379 5.17636 5.21177 5.26646 5.53984 5.73899 5.81756 5.85823 5.98921 6.12128 6.26045 6.89986 6.93923 7.36148 7.43225 7.44343 7.87220 8.17183 8.24906 8.78729 8.94964 9.51782 10.99866 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.038075 B = 0.003728 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.217970 B = 7509.462486 C = 7624.932700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.102 4.102 3 H 0.114 0.886 4 S 0.025 5.975 5 C 0.059 3.941 6 C 0.071 3.929 7 N -0.422 5.422 8 C 0.025 3.975 9 C 0.068 3.932 10 N -0.447 5.447 11 C 0.523 3.477 12 O -0.526 6.526 13 N -0.592 5.592 14 C 0.077 3.923 15 C 0.245 3.755 16 C -0.528 4.528 17 H 0.058 0.942 18 C 0.061 3.939 19 N -0.894 5.894 20 Si 0.899 3.101 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.282 1.282 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.174 0.826 28 H 0.169 0.831 29 H 0.171 0.829 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.035 0.965 34 H 0.046 0.954 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.378 10.740 17.830 21.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.235 4.235 3 H 0.132 0.868 4 S 0.267 5.733 5 C -0.192 4.192 6 C -0.097 4.097 7 N -0.137 5.137 8 C -0.137 4.137 9 C -0.095 4.095 10 N -0.166 5.166 11 C 0.307 3.693 12 O -0.403 6.403 13 N -0.324 5.324 14 C -0.067 4.067 15 C 0.126 3.874 16 C -0.567 4.567 17 H 0.077 0.923 18 C -0.141 4.141 19 N -0.533 5.533 20 Si 0.726 3.274 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.208 1.208 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.096 0.904 27 H 0.191 0.809 28 H 0.186 0.814 29 H 0.188 0.812 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.455 8.983 17.591 20.052 hybrid contribution -1.552 1.037 -0.725 2.003 sum -5.008 10.020 16.867 20.248 Atomic orbital electron populations 1.21960 0.90418 1.03759 1.03633 1.23640 1.01791 1.03618 0.94449 0.86770 1.86273 1.66114 1.27353 0.93586 1.24795 0.98161 0.97121 0.99157 1.23371 0.98993 0.99986 0.87377 1.68424 1.06858 1.03411 1.34989 1.23609 0.97394 0.95282 0.97399 1.23762 0.96775 0.98912 0.90029 1.68947 1.09188 1.03183 1.35313 1.19393 0.79376 0.87059 0.83506 1.90716 1.49999 1.15124 1.84419 1.48065 1.63672 1.09941 1.10689 1.21771 0.99425 0.82176 1.03355 1.19374 0.95396 0.92825 0.79763 1.21448 0.93400 1.34593 1.07214 0.92326 1.24938 0.95976 0.95877 0.97293 1.69938 1.19598 1.41439 1.22276 0.86430 0.82459 0.79034 0.79438 1.19787 1.20931 1.20809 0.90917 0.91224 0.90350 0.80923 0.81422 0.81196 0.93490 0.90339 0.92095 0.94662 0.93638 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 8.80 37.16 0.33 -1.64 16 2 C -0.10 -1.61 1.85 -27.88 -0.05 -1.66 16 3 H 0.11 1.61 6.91 -51.92 -0.36 1.25 16 4 S 0.02 0.37 20.66 -107.50 -2.22 -1.85 16 5 C 0.06 0.73 6.85 -16.74 -0.11 0.62 16 6 C 0.07 0.80 10.99 -17.09 -0.19 0.61 16 7 N -0.42 -4.59 10.49 -12.86 -0.13 -4.72 16 8 C 0.03 0.21 11.21 -17.38 -0.19 0.02 16 9 C 0.07 0.59 11.21 -17.40 -0.20 0.39 16 10 N -0.45 -5.22 7.65 -11.91 -0.09 -5.31 16 11 C 0.52 10.87 6.80 -10.99 -0.07 10.80 16 12 O -0.53 -13.14 15.72 5.56 0.09 -13.05 16 13 N -0.59 -12.43 2.86 -182.96 -0.52 -12.95 16 14 C 0.08 1.20 9.87 59.84 0.59 1.79 16 15 C 0.25 6.35 5.16 -5.19 -0.03 6.33 16 16 C -0.53 -14.81 9.39 -34.44 -0.32 -15.14 16 17 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 19 N -0.89 -26.37 13.29 55.43 0.74 -25.64 16 20 Si 0.90 21.72 29.54 -169.99 -5.02 16.69 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H 0.07 0.99 6.84 -51.93 -0.36 0.64 16 25 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.08 1.00 5.97 -51.93 -0.31 0.69 16 27 H 0.17 1.59 8.06 -52.49 -0.42 1.17 16 28 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 29 H 0.17 0.87 8.06 -52.49 -0.42 0.44 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 32 H 0.06 0.79 5.17 -51.93 -0.27 0.53 16 33 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 34 H 0.05 1.33 7.42 -51.93 -0.39 0.94 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 314.13 15.07 4.73 4.73 Total: -1.00 -33.74 314.13 -6.96 -40.70 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: -4.18 Total: -2.36 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -0.35 Total: 3.76 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: -0.01 Total: -48.62 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: 0.09 Total: -13.05 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: 0.37 SS G_CDS: -2.22 Total: -1.85 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.74 -6.96 -40.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074790090.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.820 kcal (2) G-P(sol) polarization free energy of solvation -33.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds