Wall clock time and date at job start Tue Mar 31 2020 05:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36936 * 120.00095 * 2 1 4 4 H 1.08005 * 119.99772 * 203.04476 * 3 2 1 5 5 C 1.38810 * 120.00244 * 23.04462 * 3 2 1 6 6 N 1.31619 * 119.99511 * 12.96780 * 5 3 2 7 7 Si 1.86802 * 120.00307 * 192.96835 * 5 3 2 8 8 H 1.48505 * 109.46865 * 359.97438 * 7 5 3 9 9 H 1.48496 * 109.46884 * 120.00069 * 7 5 3 10 10 H 1.48492 * 109.46858 * 239.99842 * 7 5 3 11 11 C 1.46506 * 120.00090 * 180.02562 * 2 1 3 12 12 C 1.50703 * 109.47059 * 89.99626 * 11 2 1 13 13 O 1.21280 * 120.00205 * 359.97438 * 12 11 2 14 14 N 1.34774 * 119.99805 * 180.02562 * 12 11 2 15 15 C 1.39000 * 120.00223 * 180.27482 * 14 12 11 16 16 N 1.28924 * 124.92750 * 359.41807 * 15 14 12 17 17 C 1.33704 * 117.63478 * 179.82256 * 16 15 14 18 18 C 1.33683 * 113.24788 * 0.44394 * 17 16 15 19 19 S 1.70729 * 124.93424 * 179.71836 * 15 14 12 20 20 C 1.51756 * 110.90219 * 179.80126 * 18 17 16 21 21 C 1.54306 * 104.79669 * 17.25004 * 20 18 17 22 22 C 1.52633 * 137.05109 * 180.08125 * 17 16 15 23 23 H 1.09008 * 109.46970 * 275.11970 * 1 2 3 24 24 H 1.08997 * 109.47553 * 35.11706 * 1 2 3 25 25 H 1.09000 * 109.47557 * 155.12334 * 1 2 3 26 26 H 0.97002 * 119.99836 * 180.02562 * 6 5 3 27 27 H 1.09002 * 109.46614 * 329.99707 * 11 2 1 28 28 H 1.09002 * 109.47297 * 209.99758 * 11 2 1 29 29 H 0.97007 * 119.99830 * 359.97438 * 14 12 11 30 30 H 1.08996 * 110.37327 * 136.07715 * 20 18 17 31 31 H 1.08994 * 110.37377 * 258.31412 * 20 18 17 32 32 H 1.09005 * 110.97687 * 91.91596 * 21 20 18 33 33 H 1.09002 * 110.97852 * 215.65371 * 21 20 18 34 34 H 1.08997 * 110.31916 * 44.06226 * 22 17 16 35 35 H 1.09000 * 110.32244 * 281.86623 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1651 1.2232 -0.3662 5 6 1.5387 2.3401 0.4706 6 7 0.4122 2.2596 1.1464 7 14 2.3154 4.0075 0.1446 8 1 3.5692 3.8265 -0.6304 9 1 1.3705 4.8504 -0.6312 10 1 2.6241 4.6708 1.4368 11 6 2.1975 -1.2688 -0.0006 12 6 2.4486 -1.7032 -1.4216 13 8 2.0541 -1.0206 -2.3431 14 7 3.1107 -2.8509 -1.6684 15 6 3.3473 -3.2488 -2.9790 16 7 2.9680 -2.6008 -4.0270 17 6 3.2780 -3.1166 -5.2210 18 6 3.9492 -4.2698 -5.1395 19 16 4.1761 -4.6701 -3.4347 20 6 4.2688 -4.8092 -6.5215 21 6 4.0830 -3.6043 -7.4674 22 6 3.0667 -2.7467 -6.6867 23 1 -0.3633 0.0917 1.0236 24 1 -0.3634 0.8406 -0.5911 25 1 -0.3634 -0.9323 -0.4323 26 1 -0.0149 3.0662 1.4750 27 1 1.6084 -2.0286 0.5130 28 1 3.1500 -1.1387 0.5133 29 1 3.4259 -3.3971 -0.9312 30 1 5.2975 -5.1671 -6.5606 31 1 3.5786 -5.6105 -6.7850 32 1 5.0218 -3.0679 -7.6052 33 1 3.6724 -3.9206 -8.4263 34 1 3.2673 -1.6867 -6.8423 35 1 2.0501 -2.9897 -6.9957 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075828533.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:50 Heat of formation + Delta-G solvation = 57.338504 kcal Electronic energy + Delta-G solvation = -19326.901918 eV Core-core repulsion = 16260.526436 eV Total energy + Delta-G solvation = -3066.375482 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.094 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.39545 -39.03730 -36.25497 -35.05179 -33.83447 -31.30743 -28.50940 -28.20490 -26.90945 -25.82483 -24.02060 -21.86970 -21.23882 -20.59055 -18.55269 -18.16473 -16.87577 -16.46935 -16.04796 -15.84710 -14.99968 -14.77824 -14.04552 -13.78083 -13.62114 -13.31605 -13.11617 -12.90961 -12.84345 -12.20887 -11.80830 -11.47728 -11.36546 -11.19380 -11.15324 -10.85791 -10.71663 -10.43880 -10.09259 -9.96878 -9.92425 -9.73076 -9.08082 -8.88961 -8.52309 -7.89573 -6.83287 -5.76032 -3.22275 0.92306 1.01924 1.74542 2.86700 3.09168 3.40269 3.47252 3.50293 3.51219 4.11492 4.43789 4.50346 4.78330 4.79314 5.31073 5.32305 5.45198 5.47768 5.51996 5.56360 5.65093 5.72691 5.90796 5.96328 6.04581 6.10421 6.19734 6.57429 6.74333 7.34685 7.43515 7.68883 7.81268 8.10157 8.33285 8.78856 9.17673 9.78280 10.24493 11.29030 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.027146 B = 0.004002 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.221818 B = 6994.358124 C = 7523.510343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.570 5.570 3 C -0.255 4.255 4 H 0.068 0.932 5 C 0.007 3.993 6 N -0.904 5.904 7 Si 0.908 3.092 8 H -0.277 1.277 9 H -0.288 1.288 10 H -0.289 1.289 11 C 0.141 3.859 12 C 0.461 3.539 13 O -0.451 6.451 14 N -0.645 5.645 15 C 0.302 3.698 16 N -0.476 5.476 17 C 0.084 3.916 18 C -0.285 4.285 19 S 0.101 5.899 20 C -0.028 4.028 21 C -0.115 4.115 22 C -0.042 4.042 23 H 0.038 0.962 24 H 0.044 0.956 25 H -0.002 1.002 26 H 0.253 0.747 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.416 0.584 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.863 -17.274 -10.877 21.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.288 5.288 3 C -0.385 4.385 4 H 0.086 0.914 5 C -0.191 4.191 6 N -0.548 5.548 7 Si 0.738 3.262 8 H -0.202 1.202 9 H -0.214 1.214 10 H -0.216 1.216 11 C 0.007 3.993 12 C 0.243 3.757 13 O -0.315 6.315 14 N -0.300 5.300 15 C -0.070 4.070 16 N -0.197 5.197 17 C -0.047 4.047 18 C -0.407 4.407 19 S 0.354 5.646 20 C -0.068 4.068 21 C -0.154 4.154 22 C -0.082 4.082 23 H 0.056 0.944 24 H 0.063 0.937 25 H 0.017 0.983 26 H 0.064 0.936 27 H 0.092 0.908 28 H 0.103 0.897 29 H 0.253 0.747 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.522 -16.779 -10.664 21.257 hybrid contribution 0.262 1.041 -0.496 1.183 sum 7.784 -15.738 -11.160 20.804 Atomic orbital electron populations 1.20877 0.81807 0.96021 0.99522 1.43653 1.02182 0.99795 1.83200 1.19189 0.98221 0.85524 1.35530 0.91450 1.24975 0.97678 0.98589 0.97899 1.70082 1.19340 1.27334 1.38091 0.86130 0.78713 0.83919 0.77454 1.20243 1.21438 1.21608 1.20700 0.98901 0.90809 0.88921 1.24528 0.76603 0.78475 0.96139 1.90759 1.44540 1.50152 1.46005 1.44305 1.57710 1.25913 1.02080 1.23708 0.98472 0.94122 0.90648 1.65627 1.24959 1.32726 0.96367 1.21451 0.97091 0.92291 0.93866 1.26526 1.13200 1.03467 0.97478 1.83464 1.57496 1.24304 0.99372 1.20534 1.01772 0.97806 0.86698 1.22343 0.99594 0.95618 0.97857 1.20872 1.00291 1.01319 0.85723 0.94366 0.93719 0.98319 0.93647 0.90756 0.89690 0.74744 0.90881 0.90304 0.90437 0.89668 0.89869 0.89534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.17 8.98 59.84 0.54 4.70 16 2 N -0.57 -14.76 2.41 -182.49 -0.44 -15.20 16 3 C -0.26 -7.27 9.65 -15.06 -0.15 -7.42 16 4 H 0.07 1.92 7.86 -52.48 -0.41 1.51 16 5 C 0.01 0.20 5.10 -17.43 -0.09 0.12 16 6 N -0.90 -26.63 10.71 55.49 0.59 -26.04 16 7 Si 0.91 22.64 29.57 -169.99 -5.03 17.62 16 8 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 9 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 11 C 0.14 2.79 6.12 -5.19 -0.03 2.76 16 12 C 0.46 9.38 7.86 -10.99 -0.09 9.29 16 13 O -0.45 -11.60 15.07 5.56 0.08 -11.52 16 14 N -0.64 -10.10 5.40 -13.27 -0.07 -10.17 16 15 C 0.30 5.05 8.00 -87.91 -0.70 4.34 16 16 N -0.48 -9.31 8.64 -10.45 -0.09 -9.40 16 17 C 0.08 1.32 7.69 -82.41 -0.63 0.69 16 18 C -0.28 -3.71 7.41 -35.38 -0.26 -3.97 16 19 S 0.10 1.26 23.22 -107.50 -2.50 -1.24 16 20 C -0.03 -0.25 6.80 -26.68 -0.18 -0.43 16 21 C -0.11 -0.93 7.13 -25.42 -0.18 -1.11 16 22 C -0.04 -0.49 6.81 -26.30 -0.18 -0.67 16 23 H 0.04 1.01 7.34 -51.92 -0.38 0.63 16 24 H 0.04 1.26 7.34 -51.93 -0.38 0.88 16 25 H 0.00 -0.04 8.03 -51.93 -0.42 -0.46 16 26 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 28 H 0.09 1.52 8.04 -51.93 -0.42 1.11 16 29 H 0.42 4.48 8.82 -40.82 -0.36 4.12 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 310.57 15.07 4.68 4.68 Total: -1.00 -36.69 310.57 -9.18 -45.87 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -4.46 Total: -2.90 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: -1.96 Total: 8.30 kcal Atomic # 7 Polarization: -60.80 SS G_CDS: -0.01 Total: -60.81 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.08 Total: -11.52 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.03 Total: 17.62 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -2.50 Total: -1.24 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -36.69 -9.18 -45.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075828533.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.212 kcal (2) G-P(sol) polarization free energy of solvation -36.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds