Wall clock time and date at job start Tue Mar 31 2020 05:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.76761 * 2 1 4 4 C 1.53415 * 109.77104 * 120.74537 * 2 1 3 5 5 N 1.46758 * 108.59206 * 182.85651 * 4 2 1 6 6 C 1.46897 * 111.00384 * 184.86270 * 5 4 2 7 7 C 1.53010 * 109.46988 * 301.08260 * 6 5 4 8 8 C 1.50695 * 109.47051 * 185.51770 * 7 6 5 9 9 H 1.08003 * 120.00384 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00313 * 179.97438 * 8 7 6 11 11 N 1.31512 * 119.99350 * 359.97438 * 10 8 7 12 12 Si 1.86792 * 120.00454 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47039 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.47417 * 119.99822 * 12 10 8 15 15 H 1.48500 * 109.47555 * 240.00084 * 12 10 8 16 16 C 1.39850 * 112.11044 * 309.63128 * 5 4 2 17 17 C 1.39140 * 118.58681 * 200.36977 * 16 5 4 18 18 C 1.38158 * 120.23041 * 180.69971 * 17 16 5 19 19 Cl 1.73597 * 119.95770 * 179.73665 * 18 17 16 20 20 C 1.38367 * 120.08585 * 359.46541 * 18 17 16 21 21 C 1.38177 * 120.01575 * 0.17642 * 20 18 17 22 22 C 1.38762 * 120.22529 * 359.97438 * 21 20 18 23 23 O 1.36173 * 118.74978 * 180.52426 * 22 21 20 24 24 H 1.09003 * 109.46532 * 299.26017 * 1 2 3 25 25 H 1.09001 * 109.47045 * 59.25100 * 1 2 3 26 26 H 1.08999 * 109.47554 * 179.25924 * 1 2 3 27 27 H 1.09006 * 109.62021 * 63.12310 * 4 2 1 28 28 H 1.08997 * 109.61785 * 302.58436 * 4 2 1 29 29 H 1.09002 * 109.46768 * 61.07430 * 6 5 4 30 30 H 1.08997 * 109.47949 * 181.08006 * 6 5 4 31 31 H 1.09000 * 109.46905 * 305.51647 * 7 6 5 32 32 H 1.08994 * 109.46909 * 65.51696 * 7 6 5 33 33 H 0.97010 * 119.99931 * 179.97438 * 11 10 8 34 34 H 1.07994 * 119.88137 * 0.42395 * 17 16 5 35 35 H 1.07996 * 119.98947 * 180.15910 * 20 18 17 36 36 H 1.08007 * 119.88331 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8987 1.0257 0.0000 4 6 2.0490 -0.7381 1.2408 5 7 3.5146 -0.6633 1.2508 6 6 4.0745 -1.4523 2.3562 7 6 3.5256 -0.9293 3.6852 8 6 4.2014 -1.6470 4.8251 9 1 4.9474 -2.4011 4.6220 10 6 3.8673 -1.3410 6.1273 11 7 2.9593 -0.4224 6.3746 12 14 4.7044 -2.2311 7.5401 13 1 5.6807 -3.2105 6.9991 14 1 5.4145 -1.2458 8.3947 15 1 3.6841 -2.9442 8.3499 16 6 4.0698 -1.0509 0.0271 17 6 5.4036 -1.4458 -0.0036 18 6 5.9906 -1.8215 -1.1965 19 17 7.6571 -2.3065 -1.2277 20 6 5.2503 -1.8171 -2.3654 21 6 3.9231 -1.4332 -2.3417 22 6 3.3276 -1.0516 -1.1478 23 8 2.0150 -0.6892 -1.1571 24 1 -0.3632 0.5023 0.8966 25 1 -0.3633 0.5254 -0.8832 26 1 -0.3634 -1.0275 -0.0133 27 1 1.7360 -1.7816 1.2036 28 1 1.6525 -0.2662 2.1398 29 1 3.7944 -2.4986 2.2341 30 1 5.1609 -1.3641 2.3519 31 1 3.7204 0.1404 3.7630 32 1 2.4513 -1.1072 3.7298 33 1 2.7239 -0.2073 7.2908 34 1 5.9833 -1.4545 0.9076 35 1 5.7099 -2.1136 -3.2966 36 1 3.3471 -1.4310 -3.2553 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076005226.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:07 Heat of formation + Delta-G solvation = -19.843462 kcal Electronic energy + Delta-G solvation = -19728.158914 eV Core-core repulsion = 16624.100114 eV Total energy + Delta-G solvation = -3104.058800 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.99552 -37.83205 -36.83759 -36.10288 -33.23384 -32.43487 -30.56821 -30.05239 -28.17892 -26.18689 -24.39116 -22.93901 -22.47071 -20.42756 -19.90764 -18.23547 -17.16227 -16.36077 -16.24750 -15.32605 -14.65067 -14.62880 -14.44692 -14.05551 -13.95957 -13.65347 -13.20516 -12.82528 -12.64565 -12.41238 -12.23940 -12.06058 -11.71339 -11.65939 -11.22693 -11.02727 -10.87944 -10.68161 -10.58010 -10.27393 -10.21505 -9.80697 -9.39692 -9.25227 -8.45960 -8.35606 -7.38290 -6.11361 -4.14448 1.28396 1.33653 2.22789 3.21196 3.25579 3.33568 3.37488 3.61182 4.03091 4.39427 4.57852 4.75858 4.94228 5.07370 5.16993 5.21199 5.25610 5.40292 5.52501 5.57646 5.69350 5.79675 5.90633 6.01461 6.05465 6.07326 6.15588 6.17399 6.33772 6.52033 6.69424 7.08664 7.21958 7.47391 7.58588 7.66606 7.88448 8.26452 8.91412 9.50434 11.00059 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.013971 B = 0.005416 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.734962 B = 5168.558520 C = 7054.997494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.082 3.918 3 H 0.083 0.917 4 C 0.022 3.978 5 N -0.485 5.485 6 C 0.061 3.939 7 C 0.025 3.975 8 C -0.524 4.524 9 H 0.057 0.943 10 C 0.060 3.940 11 N -0.892 5.892 12 Si 0.894 3.106 13 H -0.272 1.272 14 H -0.283 1.283 15 H -0.283 1.283 16 C 0.074 3.926 17 C -0.123 4.123 18 C -0.036 4.036 19 Cl -0.077 7.077 20 C -0.118 4.118 21 C -0.114 4.114 22 C 0.085 3.915 23 O -0.314 6.314 24 H 0.083 0.917 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.112 0.888 29 H 0.036 0.964 30 H 0.077 0.923 31 H 0.028 0.972 32 H 0.019 0.981 33 H 0.261 0.739 34 H 0.144 0.856 35 H 0.134 0.866 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.497 -0.803 -16.407 16.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.026 3.974 3 H 0.101 0.899 4 C -0.105 4.105 5 N -0.199 5.199 6 C -0.062 4.062 7 C -0.013 4.013 8 C -0.563 4.563 9 H 0.075 0.925 10 C -0.141 4.141 11 N -0.531 5.531 12 Si 0.722 3.278 13 H -0.197 1.197 14 H -0.209 1.209 15 H -0.209 1.209 16 C -0.026 4.026 17 C -0.144 4.144 18 C -0.064 4.064 19 Cl -0.049 7.049 20 C -0.138 4.138 21 C -0.134 4.134 22 C 0.038 3.962 23 O -0.229 6.229 24 H 0.102 0.898 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.130 0.870 29 H 0.054 0.946 30 H 0.095 0.905 31 H 0.047 0.953 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.162 0.838 35 H 0.152 0.848 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.516 -0.288 -16.216 16.227 hybrid contribution 0.510 -1.036 1.020 1.540 sum -0.006 -1.324 -15.196 15.254 Atomic orbital electron populations 1.21761 0.91545 1.03466 1.03248 1.22744 0.95647 0.95806 0.83222 0.89937 1.22895 0.86833 1.00737 1.00035 1.58887 1.06297 1.52863 1.01811 1.22684 0.99844 0.93640 0.90081 1.19183 0.96315 0.97461 0.88321 1.21134 1.22758 1.21585 0.90785 0.92480 1.24976 0.95091 0.95113 0.98962 1.69966 1.31575 1.31509 1.20064 0.86503 0.79455 0.79656 0.82224 1.19654 1.20882 1.20944 1.19020 0.94011 0.98976 0.90600 1.20870 0.93787 1.01810 0.97951 1.20523 0.85846 1.05026 0.94974 1.98348 1.17253 1.90388 1.98868 1.20619 0.93201 1.02843 0.97095 1.20273 0.94097 1.03083 0.95939 1.18687 0.83685 1.00821 0.93038 1.86191 1.21844 1.72813 1.42027 0.89830 0.91349 0.91482 0.92527 0.86953 0.94574 0.90456 0.95340 0.96301 0.92899 0.83822 0.84804 0.84579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.60 37.16 0.36 -1.15 16 2 C 0.08 1.13 3.64 -26.51 -0.10 1.03 16 3 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 4 C 0.02 0.35 4.44 -3.69 -0.02 0.33 16 5 N -0.49 -8.85 4.69 -170.82 -0.80 -9.65 16 6 C 0.06 1.25 4.41 -3.82 -0.02 1.23 16 7 C 0.02 0.60 4.53 -27.88 -0.13 0.48 16 8 C -0.52 -14.28 9.11 -34.44 -0.31 -14.60 16 9 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 10 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 11 N -0.89 -25.89 13.29 55.43 0.74 -25.15 16 12 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 13 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 C 0.07 1.26 5.83 -83.59 -0.49 0.77 16 17 C -0.12 -1.96 8.85 -39.28 -0.35 -2.31 16 18 C -0.04 -0.51 6.31 -39.56 -0.25 -0.76 16 19 Cl -0.08 -1.00 28.95 -51.86 -1.50 -2.50 16 20 C -0.12 -1.47 9.83 -39.56 -0.39 -1.86 16 21 C -0.11 -1.49 9.94 -39.41 -0.39 -1.88 16 22 C 0.09 1.32 6.47 -39.12 -0.25 1.07 16 23 O -0.31 -4.70 10.06 -20.29 -0.20 -4.90 16 24 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.11 1.90 6.71 -51.93 -0.35 1.55 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.08 1.56 5.93 -51.93 -0.31 1.25 16 31 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.02 0.48 6.82 -51.93 -0.35 0.12 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.14 2.36 5.93 -52.49 -0.31 2.05 16 35 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.14 1.45 8.06 -52.48 -0.42 1.03 16 LS Contribution 310.80 15.07 4.68 4.68 Total: -1.00 -29.11 310.80 -9.20 -38.31 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -4.67 Total: -0.83 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -2.43 Total: -16.06 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: -0.06 Total: -34.80 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: -0.20 Total: -4.90 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.50 Total: -2.50 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.11 -9.20 -38.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076005226.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.465 kcal (2) G-P(sol) polarization free energy of solvation -29.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds