Wall clock time and date at job start Tue Mar 31 2020 05:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.36032 * 116.99693 * 2 1 4 4 C 1.38495 * 120.06844 * 359.97438 * 3 2 1 5 5 C 1.38281 * 120.03194 * 179.72798 * 4 3 2 6 6 C 1.38365 * 120.16722 * 0.27429 * 5 4 3 7 7 Cl 1.73603 * 119.93250 * 179.97438 * 6 5 4 8 8 C 1.38316 * 120.13324 * 0.02562 * 6 5 4 9 9 C 1.38721 * 119.96767 * 359.97438 * 8 6 5 10 10 N 1.39959 * 120.08152 * 180.02562 * 9 8 6 11 11 C 1.46503 * 120.00187 * 354.87890 * 10 9 8 12 12 C 1.53003 * 109.47262 * 185.08584 * 11 10 9 13 13 C 1.50706 * 115.54795 * 39.79272 * 12 11 10 14 14 H 1.07993 * 119.99894 * 264.76697 * 13 12 11 15 15 C 1.37876 * 119.99522 * 84.77263 * 13 12 11 16 16 N 1.31513 * 119.99406 * 184.86103 * 15 13 12 17 17 Si 1.86792 * 120.00413 * 4.86250 * 15 13 12 18 18 H 1.48505 * 109.47264 * 94.79348 * 17 15 13 19 19 H 1.48502 * 109.47214 * 214.79663 * 17 15 13 20 20 H 1.48496 * 109.47292 * 334.79447 * 17 15 13 21 21 C 1.52999 * 117.49848 * 254.08575 * 12 11 10 22 22 C 1.52996 * 117.49691 * 185.46544 * 12 11 10 23 23 H 1.09000 * 109.47861 * 300.00215 * 1 2 3 24 24 H 1.08996 * 109.47265 * 60.00432 * 1 2 3 25 25 H 1.09007 * 109.47050 * 180.02562 * 1 2 3 26 26 H 1.07996 * 119.98519 * 0.02562 * 4 3 2 27 27 H 1.08005 * 119.91862 * 180.30094 * 5 4 3 28 28 H 1.07996 * 120.01556 * 180.02562 * 8 6 5 29 29 H 0.97003 * 120.00364 * 174.88135 * 10 9 8 30 30 H 1.08991 * 109.46980 * 305.08751 * 11 10 9 31 31 H 1.08999 * 109.46593 * 65.08935 * 11 10 9 32 32 H 0.97008 * 120.00001 * 179.97438 * 16 15 13 33 33 H 1.09004 * 117.49764 * 359.97438 * 21 12 11 34 34 H 1.08998 * 117.49834 * 145.02130 * 21 12 11 35 35 H 1.09007 * 117.49242 * 214.98015 * 22 12 11 36 36 H 1.08997 * 117.50433 * 359.97185 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2121 0.0000 4 6 1.2935 2.3745 -0.0005 5 6 1.9220 3.6062 0.0051 6 6 3.3035 3.6818 0.0057 7 17 4.0862 5.2314 0.0121 8 6 4.0623 2.5254 -0.0001 9 6 3.4376 1.2868 -0.0058 10 7 4.2030 0.1151 -0.0110 11 6 5.6616 0.1934 -0.1237 12 6 6.2412 -1.2184 -0.2328 13 6 5.4551 -2.1796 -1.0868 14 1 4.7377 -2.8452 -0.6301 15 6 5.6520 -2.2092 -2.4511 16 7 4.8998 -2.9785 -3.2073 17 14 6.9870 -1.1568 -3.2252 18 1 8.2244 -1.9629 -3.3817 19 1 6.5333 -0.6825 -4.5573 20 1 7.2647 0.0118 -2.3521 21 6 6.9555 -1.7856 0.9956 22 6 7.7648 -1.3586 -0.2306 23 1 -0.3635 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 0.2149 2.3189 -0.0005 27 1 1.3329 4.5115 0.0096 28 1 5.1405 2.5866 0.0008 29 1 3.7678 -0.7489 0.0599 30 1 5.9271 0.7648 -1.0130 31 1 6.0682 0.6859 0.7595 32 1 5.0380 -2.9991 -4.1673 33 1 7.0129 -1.1528 1.8813 34 1 6.8569 -2.8542 1.1864 35 1 8.1985 -2.1464 -0.8466 36 1 8.3542 -0.4451 -0.1520 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088249499.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:12 Heat of formation + Delta-G solvation = 9.634485 kcal Electronic energy + Delta-G solvation = -19782.655482 eV Core-core repulsion = 16679.874942 eV Total energy + Delta-G solvation = -3102.780540 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.97494 -37.68250 -37.17124 -36.03116 -34.22830 -32.15865 -29.78845 -29.37929 -27.00417 -25.98555 -25.10017 -21.96388 -21.74209 -21.36853 -19.18843 -17.91628 -16.78761 -16.51487 -15.82203 -15.52036 -15.01688 -14.70581 -14.24126 -14.10791 -13.68139 -13.53009 -13.12937 -12.95752 -12.62963 -12.31095 -12.16014 -11.76373 -11.55803 -11.18203 -11.06165 -10.87980 -10.65311 -10.53612 -10.46768 -10.22072 -9.72488 -9.54610 -9.14217 -8.62362 -8.52542 -8.21527 -6.68583 -6.17128 -4.21436 1.49616 1.75445 2.37542 3.25648 3.36697 3.39277 3.51616 3.95617 4.07752 4.38129 4.87304 4.96198 5.11954 5.16546 5.29783 5.33580 5.51745 5.61740 5.67781 5.74788 5.88831 5.94446 6.04528 6.12808 6.16282 6.39036 6.42488 6.44478 6.55324 6.65817 6.81596 6.92432 7.04723 7.49376 7.65304 7.98275 8.40103 8.54110 8.83913 9.46205 10.93939 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.014909 B = 0.006106 C = 0.005165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.610674 B = 4584.563678 C = 5419.543068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.310 6.310 3 C 0.052 3.948 4 C -0.152 4.152 5 C -0.153 4.153 6 C -0.011 4.011 7 Cl -0.087 7.087 8 C -0.181 4.181 9 C 0.228 3.772 10 N -0.700 5.700 11 C 0.155 3.845 12 C -0.012 4.012 13 C -0.490 4.490 14 H 0.078 0.922 15 C 0.084 3.916 16 N -0.891 5.891 17 Si 0.877 3.123 18 H -0.280 1.280 19 H -0.294 1.294 20 H -0.255 1.255 21 C -0.179 4.179 22 C -0.194 4.194 23 H 0.049 0.951 24 H 0.051 0.949 25 H 0.097 0.903 26 H 0.130 0.870 27 H 0.124 0.876 28 H 0.134 0.866 29 H 0.418 0.582 30 H 0.054 0.946 31 H 0.039 0.961 32 H 0.265 0.735 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.570 11.013 6.906 14.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.223 6.223 3 C 0.003 3.997 4 C -0.172 4.172 5 C -0.175 4.175 6 C -0.039 4.039 7 Cl -0.059 7.059 8 C -0.206 4.206 9 C 0.118 3.882 10 N -0.327 5.327 11 C 0.031 3.969 12 C -0.014 4.014 13 C -0.527 4.527 14 H 0.096 0.904 15 C -0.120 4.120 16 N -0.527 5.527 17 Si 0.705 3.295 18 H -0.206 1.206 19 H -0.221 1.221 20 H -0.179 1.179 21 C -0.216 4.216 22 C -0.232 4.232 23 H 0.068 0.932 24 H 0.070 0.930 25 H 0.115 0.885 26 H 0.148 0.852 27 H 0.142 0.858 28 H 0.152 0.848 29 H 0.257 0.743 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.227 10.840 6.695 13.771 hybrid contribution 0.437 0.463 -0.659 0.916 sum -4.790 11.303 6.036 13.680 Atomic orbital electron populations 1.22964 0.78949 1.03686 1.00661 1.86107 1.20750 1.26038 1.89425 1.18520 0.90493 0.85016 1.05676 1.20797 0.99424 0.91137 1.05847 1.20349 0.91985 0.97465 1.07675 1.20388 0.92371 0.85372 1.05726 1.98327 1.81399 1.28985 1.97153 1.20220 1.00057 0.88864 1.11453 1.17165 0.87295 0.88025 0.95727 1.44813 1.05582 1.05523 1.76769 1.21079 0.79754 0.97644 0.98453 1.19565 0.90610 0.93233 0.97954 1.20120 1.22772 1.19125 0.90726 0.90381 1.24945 0.95511 0.94534 0.96995 1.69898 1.38420 1.38990 1.05406 0.86887 0.82185 0.81885 0.78519 1.20647 1.22103 1.17887 1.22902 1.06641 1.00727 0.91364 1.22946 0.95865 1.01822 1.02579 0.93196 0.93017 0.88456 0.85178 0.85756 0.84770 0.74261 0.92771 0.94254 0.92532 0.90864 0.89506 0.89371 0.90817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.81 101.05 0.99 1.37 16 2 O -0.31 -5.18 9.75 -19.84 -0.19 -5.37 16 3 C 0.05 0.87 6.70 -39.09 -0.26 0.61 16 4 C -0.15 -2.13 9.04 -39.47 -0.36 -2.48 16 5 C -0.15 -2.12 9.82 -39.52 -0.39 -2.50 16 6 C -0.01 -0.17 6.32 -39.51 -0.25 -0.42 16 7 Cl -0.09 -1.18 28.95 -51.86 -1.50 -2.68 16 8 C -0.18 -3.04 9.08 -39.37 -0.36 -3.39 16 9 C 0.23 4.15 6.66 -83.57 -0.56 3.59 16 10 N -0.70 -14.02 5.46 -58.50 -0.32 -14.34 16 11 C 0.16 3.11 4.82 -4.04 -0.02 3.09 16 12 C -0.01 -0.27 1.13 -155.66 -0.18 -0.45 16 13 C -0.49 -12.86 8.09 -34.44 -0.28 -13.14 16 14 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 15 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 16 N -0.89 -26.31 13.96 55.43 0.77 -25.53 16 17 Si 0.88 21.23 25.19 -169.99 -4.28 16.95 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 20 H -0.25 -5.77 5.23 56.52 0.30 -5.47 16 21 C -0.18 -3.46 9.88 -26.73 -0.26 -3.72 16 22 C -0.19 -3.93 7.33 -26.74 -0.20 -4.12 16 23 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 24 H 0.05 0.54 7.66 -51.93 -0.40 0.14 16 25 H 0.10 0.98 8.14 -51.92 -0.42 0.56 16 26 H 0.13 1.44 6.29 -52.49 -0.33 1.11 16 27 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 28 H 0.13 2.20 6.76 -52.49 -0.36 1.84 16 29 H 0.42 9.00 6.93 -40.82 -0.28 8.72 16 30 H 0.05 1.14 6.42 -51.93 -0.33 0.80 16 31 H 0.04 0.71 7.80 -51.93 -0.41 0.30 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.07 1.25 8.08 -51.93 -0.42 0.83 16 34 H 0.09 1.70 8.14 -51.93 -0.42 1.27 16 35 H 0.09 1.87 7.13 -51.93 -0.37 1.50 16 36 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 310.51 15.07 4.68 4.68 Total: -1.00 -28.64 310.51 -7.70 -36.34 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -4.65 Total: 9.32 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: -2.21 Total: -19.36 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.45 Total: -39.87 kcal Atomic # 8 Polarization: -5.18 SS G_CDS: -0.19 Total: -5.37 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.28 Total: 16.95 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -1.50 Total: -2.68 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.64 -7.70 -36.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088249499.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.974 kcal (2) G-P(sol) polarization free energy of solvation -28.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds