Wall clock time and date at job start Tue Mar 31 2020 05:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47134 * 2 1 4 4 C 1.52995 * 109.47273 * 239.99842 * 2 1 3 5 5 C 1.50703 * 109.47442 * 65.00130 * 4 2 1 6 6 O 1.21287 * 119.99527 * 359.97438 * 5 4 2 7 7 N 1.34774 * 119.99902 * 180.02562 * 5 4 2 8 8 C 1.37104 * 119.99174 * 179.97438 * 7 5 4 9 9 H 1.07991 * 120.00516 * 359.97438 * 8 7 5 10 10 C 1.38955 * 119.99262 * 179.97438 * 8 7 5 11 11 N 1.31412 * 120.00203 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99512 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47188 * 60.00214 * 12 10 8 14 14 H 1.48504 * 109.46739 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47433 * 299.99533 * 12 10 8 16 16 C 1.53005 * 109.47138 * 119.99761 * 2 1 3 17 17 C 1.50697 * 109.46832 * 295.00022 * 16 2 1 18 18 C 1.38247 * 119.98676 * 90.00295 * 17 16 2 19 19 C 1.38216 * 120.01497 * 179.97438 * 18 17 16 20 20 C 1.38357 * 119.98603 * 0.02562 * 19 18 17 21 21 Cl 1.73599 * 120.01134 * 180.02562 * 20 19 18 22 22 C 1.38347 * 119.97107 * 0.28224 * 20 19 18 23 23 C 1.38219 * 119.98927 * 359.42057 * 22 20 19 24 24 H 1.09002 * 109.47333 * 300.00316 * 1 2 3 25 25 H 1.08995 * 109.46881 * 60.00108 * 1 2 3 26 26 H 1.09004 * 109.47134 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47580 * 185.00214 * 4 2 1 28 28 H 1.09005 * 109.47380 * 304.99651 * 4 2 1 29 29 H 0.96994 * 120.00309 * 359.97438 * 7 5 4 30 30 H 0.97005 * 119.99718 * 179.97438 * 11 10 8 31 31 H 1.08996 * 109.47247 * 174.99730 * 16 2 1 32 32 H 1.09004 * 109.46969 * 54.99966 * 16 2 1 33 33 H 1.08003 * 119.99321 * 359.97223 * 18 17 16 34 34 H 1.08003 * 120.00776 * 179.97438 * 19 18 17 35 35 H 1.08000 * 120.00645 * 179.69150 * 22 20 19 36 36 H 1.07997 * 119.99421 * 180.29781 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 8 1.0110 1.0869 -2.3633 7 7 1.9846 -0.3921 -3.7001 8 6 1.6214 0.3158 -4.8167 9 1 1.0601 1.2328 -4.7159 10 6 1.9757 -0.1469 -6.0782 11 7 2.6592 -1.2626 -6.2008 12 14 1.4804 0.8171 -7.5996 13 1 2.0714 2.1780 -7.5376 14 1 1.9762 0.1174 -8.8120 15 1 0.0003 0.9224 -7.6588 16 6 2.0400 -0.7212 1.2493 17 6 1.6413 0.0572 2.4765 18 6 0.4354 -0.2051 3.0996 19 6 0.0694 0.5081 4.2255 20 6 0.9099 1.4850 4.7288 21 17 0.4511 2.3808 6.1433 22 6 2.1137 1.7514 4.1011 23 6 2.4814 1.0333 2.9788 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1263 -0.7995 -1.2055 28 1 1.6055 -1.7199 -1.2951 29 1 2.4885 -1.2159 -3.7907 30 1 2.9062 -1.5857 -7.0815 31 1 3.1263 -0.7995 1.2057 32 1 1.6054 -1.7198 1.2952 33 1 -0.2209 -0.9675 2.7064 34 1 -0.8730 0.3034 4.7119 35 1 2.7680 2.5174 4.4906 36 1 3.4233 1.2379 2.4917 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091234452.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:46 Heat of formation + Delta-G solvation = -46.510188 kcal Electronic energy + Delta-G solvation = -18798.368940 eV Core-core repulsion = 15693.153784 eV Total energy + Delta-G solvation = -3105.215156 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.73585 -38.40521 -36.77245 -35.41386 -33.83504 -31.33182 -31.23654 -31.03947 -27.47800 -26.53696 -24.53920 -22.96276 -21.87674 -20.08872 -18.91345 -17.80739 -17.22051 -15.99985 -15.71879 -15.34129 -14.78982 -14.50279 -14.11956 -13.82848 -13.69178 -13.61841 -13.38828 -12.91404 -12.61903 -12.00911 -11.76855 -11.59890 -11.51608 -11.41147 -11.30835 -11.04702 -10.94872 -10.64973 -10.47923 -10.41588 -10.30944 -10.18600 -9.46775 -9.15750 -8.63928 -8.28915 -7.95183 -6.41387 -3.82153 1.01766 1.15879 1.97525 3.19843 3.25490 3.29953 3.48854 3.93502 4.17799 4.61400 4.66242 4.73973 5.00106 5.08554 5.21009 5.24459 5.36328 5.37882 5.57848 5.59245 5.73168 5.86488 5.91214 6.01701 6.07972 6.09618 6.13711 6.26104 6.32349 6.48730 6.55509 6.68600 6.76317 6.96888 7.55271 8.06738 8.62121 9.18336 9.56224 10.07858 10.76282 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.044579 B = 0.002748 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.954302 B =10187.232426 C =10379.477948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.062 4.062 3 H 0.077 0.923 4 C -0.128 4.128 5 C 0.441 3.559 6 O -0.593 6.593 7 N -0.564 5.564 8 C -0.301 4.301 9 H 0.102 0.898 10 C 0.022 3.978 11 N -0.902 5.902 12 Si 0.930 3.070 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.274 1.274 16 C -0.083 4.083 17 C -0.062 4.062 18 C -0.103 4.103 19 C -0.110 4.110 20 C -0.044 4.044 21 Cl -0.081 7.081 22 C -0.109 4.109 23 C -0.106 4.106 24 H 0.046 0.954 25 H 0.083 0.917 26 H 0.042 0.958 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.392 0.608 30 H 0.272 0.728 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.132 0.868 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.611 -0.349 19.970 19.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.081 4.081 3 H 0.095 0.905 4 C -0.168 4.168 5 C 0.227 3.773 6 O -0.479 6.479 7 N -0.200 5.200 8 C -0.430 4.430 9 H 0.120 0.880 10 C -0.179 4.179 11 N -0.544 5.544 12 Si 0.757 3.243 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.199 1.199 16 C -0.120 4.120 17 C -0.062 4.062 18 C -0.121 4.121 19 C -0.129 4.129 20 C -0.070 4.070 21 Cl -0.052 7.052 22 C -0.128 4.128 23 C -0.124 4.124 24 H 0.065 0.935 25 H 0.102 0.898 26 H 0.061 0.939 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.226 0.774 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.150 0.850 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.001 0.316 19.979 20.007 hybrid contribution 0.083 -0.007 -0.755 0.760 sum -0.918 0.309 19.224 19.248 Atomic orbital electron populations 1.22000 0.94884 1.00914 1.03125 1.20742 0.96717 0.99636 0.91007 0.90471 1.21569 1.01424 0.99754 0.94100 1.19941 0.85191 0.87715 0.84407 1.90475 1.44662 1.26367 1.86356 1.41932 1.49304 1.24091 1.04655 1.19669 1.32931 1.06985 0.83461 0.88020 1.25260 0.96892 0.96535 0.99255 1.69606 1.38613 1.21043 1.25098 0.85937 0.79002 0.79333 0.80064 1.19919 1.20975 1.19915 1.20828 1.01367 0.98348 0.91464 1.20071 0.94003 0.96068 0.96025 1.21077 0.96382 0.99936 0.94687 1.21031 0.99472 0.95504 0.96901 1.20892 0.96866 0.97563 0.91717 1.98358 1.92449 1.74650 1.39729 1.21025 0.95284 1.00343 0.96121 1.21072 1.00241 0.95523 0.95550 0.93500 0.89849 0.93892 0.90585 0.90527 0.77439 0.91837 0.90752 0.90748 0.85013 0.85186 0.85163 0.85009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 8.50 37.16 0.32 -2.05 16 2 C -0.06 -0.93 2.03 -90.62 -0.18 -1.11 16 3 H 0.08 1.30 7.96 -51.93 -0.41 0.89 16 4 C -0.13 -2.13 5.17 -27.88 -0.14 -2.28 16 5 C 0.44 10.14 7.50 -10.98 -0.08 10.06 16 6 O -0.59 -15.52 13.54 5.55 0.08 -15.44 16 7 N -0.56 -14.21 5.29 -10.96 -0.06 -14.27 16 8 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 9 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 10 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 11 N -0.90 -24.54 13.05 55.50 0.72 -23.82 16 12 Si 0.93 21.04 29.55 -169.99 -5.02 16.02 16 13 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 14 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 15 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 16 C -0.08 -0.93 4.84 -27.88 -0.13 -1.07 16 17 C -0.06 -0.69 4.71 -104.62 -0.49 -1.18 16 18 C -0.10 -1.08 7.96 -39.59 -0.32 -1.40 16 19 C -0.11 -1.14 9.83 -39.55 -0.39 -1.53 16 20 C -0.04 -0.47 6.32 -39.50 -0.25 -0.72 16 21 Cl -0.08 -0.81 28.96 -51.86 -1.50 -2.31 16 22 C -0.11 -1.14 9.83 -39.55 -0.39 -1.53 16 23 C -0.11 -1.13 9.70 -39.59 -0.38 -1.52 16 24 H 0.05 0.66 6.27 -51.93 -0.33 0.34 16 25 H 0.08 1.62 5.95 -51.93 -0.31 1.31 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 30 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 32 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 33 H 0.13 1.21 8.04 -52.48 -0.42 0.79 16 34 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 35 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 LS Contribution 319.63 15.07 4.82 4.82 Total: -1.00 -30.16 319.63 -8.33 -38.49 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -4.68 Total: 8.83 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -2.69 Total: -12.32 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.67 Total: -38.08 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: 0.08 Total: -15.44 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.50 Total: -2.31 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.16 -8.33 -38.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091234452.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.020 kcal (2) G-P(sol) polarization free energy of solvation -30.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds