Wall clock time and date at job start Tue Mar 31 2020 05:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.67550 * 2 1 4 4 C 1.53291 * 109.68371 * 239.44187 * 2 1 3 5 5 O 1.42961 * 109.26513 * 292.55512 * 4 2 1 6 6 C 1.42965 * 114.16706 * 297.50278 * 5 4 2 7 7 H 1.08998 * 109.51177 * 302.54254 * 6 5 4 8 8 C 1.50705 * 109.50935 * 182.44757 * 6 5 4 9 9 C 1.38237 * 120.00813 * 335.35335 * 8 6 5 10 10 C 1.38215 * 120.01489 * 180.23521 * 9 8 6 11 11 C 1.38259 * 120.02468 * 359.48726 * 10 9 8 12 12 C 1.38193 * 120.01321 * 0.28370 * 11 10 9 13 13 C 1.38324 * 120.00480 * 155.09992 * 8 6 5 14 14 Cl 1.73602 * 120.01583 * 359.97438 * 13 8 6 15 15 C 1.53295 * 109.26385 * 62.49832 * 6 5 4 16 16 N 1.47149 * 108.38482 * 307.72096 * 15 6 5 17 17 C 1.36937 * 120.98081 * 230.56175 * 16 15 6 18 18 H 1.07999 * 120.00191 * 153.29198 * 17 16 15 19 19 C 1.38817 * 119.99960 * 333.28418 * 17 16 15 20 20 N 1.31612 * 119.99943 * 343.57976 * 19 17 16 21 21 Si 1.86796 * 119.99829 * 163.57654 * 19 17 16 22 22 H 1.48500 * 109.47349 * 59.99958 * 21 19 17 23 23 H 1.48505 * 109.47346 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47251 * 300.00164 * 21 19 17 25 25 H 1.08994 * 109.47234 * 299.48492 * 1 2 3 26 26 H 1.09000 * 109.47245 * 59.48622 * 1 2 3 27 27 H 1.09002 * 109.47241 * 179.48393 * 1 2 3 28 28 H 1.09003 * 109.50934 * 52.49976 * 4 2 1 29 29 H 1.09001 * 109.51327 * 172.60363 * 4 2 1 30 30 H 1.08005 * 119.99254 * 0.02562 * 9 8 6 31 31 H 1.07999 * 119.98944 * 179.77321 * 10 9 8 32 32 H 1.08005 * 119.99650 * 180.25549 * 11 10 9 33 33 H 1.08010 * 120.00692 * 179.97438 * 12 11 10 34 34 H 1.08998 * 109.68438 * 67.44940 * 15 6 5 35 35 H 1.09009 * 109.67622 * 187.96007 * 15 6 5 36 36 H 0.97004 * 119.99915 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8970 1.0264 0.0000 4 6 2.0463 -0.7338 -1.2429 5 8 1.7178 -2.1215 -1.1418 6 6 2.3260 -2.7877 -0.0327 7 1 3.4092 -2.6827 -0.0943 8 6 1.9596 -4.2492 -0.0609 9 6 0.8036 -4.6600 -0.6980 10 6 0.4649 -5.9999 -0.7198 11 6 1.2874 -6.9313 -0.1136 12 6 2.4457 -6.5224 0.5196 13 6 2.7826 -5.1805 0.5462 14 17 4.2382 -4.6663 1.3403 15 6 1.8239 -2.1590 1.2722 16 7 2.0255 -0.7035 1.1937 17 6 2.6561 -0.0239 2.2015 18 1 3.1771 0.8977 1.9878 19 6 2.6254 -0.5193 3.4979 20 7 1.7454 -1.4399 3.8298 21 14 3.8332 0.1207 4.7711 22 1 3.6439 1.5837 4.9415 23 1 3.5953 -0.5640 6.0672 24 1 5.2209 -0.1491 4.3166 25 1 -0.3633 0.5058 0.8945 26 1 -0.3634 0.5218 -0.8853 27 1 -0.3634 -1.0276 -0.0093 28 1 1.5800 -0.3133 -2.1339 29 1 3.1283 -0.6197 -1.3098 30 1 0.1632 -3.9334 -1.1760 31 1 -0.4401 -6.3199 -1.2146 32 1 1.0244 -7.9786 -0.1345 33 1 3.0880 -7.2501 0.9935 34 1 0.7636 -2.3764 1.4003 35 1 2.3858 -2.5632 2.1143 36 1 1.7238 -1.7859 4.7359 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111308923.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:50 Heat of formation + Delta-G solvation = -3.153192 kcal Electronic energy + Delta-G solvation = -20576.137550 eV Core-core repulsion = 17472.802495 eV Total energy + Delta-G solvation = -3103.335056 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.52235 -38.10483 -36.06515 -34.59079 -32.80607 -31.54419 -30.48676 -29.47306 -27.20294 -25.58797 -23.79271 -22.78278 -22.31562 -20.90618 -18.71159 -17.16340 -16.67663 -15.89561 -15.33762 -15.20764 -14.41643 -14.22263 -14.10501 -13.78690 -13.51420 -13.43933 -12.74878 -12.54475 -12.25870 -11.98438 -11.45262 -11.26642 -11.16391 -11.14041 -11.02872 -10.73085 -10.50159 -10.38992 -10.30488 -10.22989 -9.82689 -9.52506 -9.09384 -8.60565 -8.49416 -8.31885 -6.70379 -5.80062 -3.23642 1.39173 1.51711 2.49473 3.37160 3.43359 3.44075 3.85803 4.26849 4.45772 4.99026 5.14335 5.15952 5.37187 5.37874 5.57016 5.63359 5.78265 5.83996 5.90688 5.99926 6.17988 6.19514 6.22750 6.31760 6.43106 6.50324 6.55786 6.66164 6.68918 6.90195 7.01541 7.04046 7.22440 7.58279 7.75468 7.92177 8.38673 9.15255 9.78508 10.35752 11.27344 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.015921 B = 0.007731 C = 0.005958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.280807 B = 3620.840575 C = 4698.785690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.129 3.871 3 H 0.069 0.931 4 C 0.057 3.943 5 O -0.386 6.386 6 C 0.099 3.901 7 H 0.067 0.933 8 C -0.052 4.052 9 C -0.086 4.086 10 C -0.121 4.121 11 C -0.120 4.120 12 C -0.114 4.114 13 C -0.029 4.029 14 Cl -0.063 7.063 15 C 0.160 3.840 16 N -0.586 5.586 17 C -0.256 4.256 18 H 0.067 0.933 19 C 0.007 3.993 20 N -0.898 5.898 21 Si 0.901 3.099 22 H -0.282 1.282 23 H -0.290 1.290 24 H -0.283 1.283 25 H 0.052 0.948 26 H 0.036 0.964 27 H 0.050 0.950 28 H 0.083 0.917 29 H 0.043 0.957 30 H 0.136 0.864 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.027 0.973 35 H 0.101 0.899 36 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.365 -7.967 -9.070 12.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.022 3.978 3 H 0.087 0.913 4 C -0.021 4.021 5 O -0.305 6.305 6 C 0.040 3.960 7 H 0.085 0.915 8 C -0.054 4.054 9 C -0.104 4.104 10 C -0.140 4.140 11 C -0.138 4.138 12 C -0.133 4.133 13 C -0.056 4.056 14 Cl -0.034 7.034 15 C 0.033 3.967 16 N -0.308 5.308 17 C -0.385 4.385 18 H 0.085 0.915 19 C -0.192 4.192 20 N -0.542 5.542 21 Si 0.730 3.270 22 H -0.208 1.208 23 H -0.215 1.215 24 H -0.210 1.210 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.101 0.899 29 H 0.062 0.938 30 H 0.154 0.846 31 H 0.142 0.858 32 H 0.144 0.856 33 H 0.147 0.853 34 H 0.045 0.955 35 H 0.119 0.881 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.365 -8.062 -8.919 12.028 hybrid contribution 0.794 0.469 1.062 1.406 sum 0.429 -7.593 -7.858 10.935 Atomic orbital electron populations 1.22111 0.98069 1.01242 0.99767 1.21239 0.92795 0.95783 0.88025 0.91324 1.22995 0.98857 0.81792 0.98505 1.87706 1.72641 1.22250 1.47926 1.21804 0.96862 0.86965 0.90374 0.91535 1.19649 0.94355 0.94626 0.96756 1.21001 0.95777 0.95824 0.97789 1.21208 0.99666 0.93199 0.99878 1.21005 0.94481 0.99612 0.98707 1.20934 0.98049 0.93578 1.00759 1.20739 0.90607 0.93805 1.00423 1.98383 1.35374 1.91141 1.78485 1.21343 0.98866 0.83582 0.92860 1.44132 1.66526 1.01843 1.18282 1.19109 1.25682 1.07321 0.86382 0.91494 1.25027 0.97902 0.99482 0.96802 1.69996 1.33766 1.31678 1.18732 0.86400 0.81340 0.78406 0.80838 1.20825 1.21531 1.20975 0.92916 0.94503 0.93044 0.89872 0.93839 0.84614 0.85792 0.85637 0.85277 0.95468 0.88083 0.93451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.24 37.16 0.34 -2.64 16 2 C 0.13 2.68 3.33 -67.43 -0.22 2.46 16 3 H 0.07 1.39 7.96 -51.93 -0.41 0.97 16 4 C 0.06 1.03 6.35 37.31 0.24 1.27 16 5 O -0.39 -7.55 8.85 -35.23 -0.31 -7.86 16 6 C 0.10 2.04 2.51 -27.73 -0.07 1.97 16 7 H 0.07 1.43 7.13 -51.93 -0.37 1.06 16 8 C -0.05 -0.96 5.07 -104.59 -0.53 -1.49 16 9 C -0.09 -1.38 9.35 -39.59 -0.37 -1.75 16 10 C -0.12 -1.61 10.05 -39.58 -0.40 -2.01 16 11 C -0.12 -1.50 10.05 -39.59 -0.40 -1.90 16 12 C -0.11 -1.63 9.83 -39.55 -0.39 -2.01 16 13 C -0.03 -0.50 6.31 -39.50 -0.25 -0.75 16 14 Cl -0.06 -1.12 27.21 -51.86 -1.41 -2.53 16 15 C 0.16 3.87 4.32 -3.54 -0.02 3.85 16 16 N -0.59 -14.62 2.74 -164.30 -0.45 -15.07 16 17 C -0.26 -6.96 9.65 -15.06 -0.15 -7.10 16 18 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 19 C 0.01 0.20 4.95 -17.43 -0.09 0.11 16 20 N -0.90 -25.92 11.14 55.49 0.62 -25.30 16 21 Si 0.90 21.75 29.58 -169.99 -5.03 16.72 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 25 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 1.06 7.23 -51.93 -0.38 0.68 16 28 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.14 2.17 7.34 -52.48 -0.39 1.78 16 31 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 33 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 34 H 0.03 0.72 7.66 -51.93 -0.40 0.32 16 35 H 0.10 2.71 5.97 -51.92 -0.31 2.40 16 36 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 308.09 15.07 4.64 4.64 Total: -1.00 -29.53 308.09 -9.00 -38.52 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -4.76 Total: 0.87 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -2.29 Total: -10.00 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: 0.17 Total: -40.37 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: -0.31 Total: -7.86 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -1.41 Total: -2.53 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.53 -9.00 -38.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111308923.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.370 kcal (2) G-P(sol) polarization free energy of solvation -29.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds