Wall clock time and date at job start Tue Mar 31 2020 05:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47309 * 2 1 4 4 N 1.46505 * 109.47288 * 185.71834 * 3 2 1 5 5 C 1.36881 * 119.99877 * 278.59005 * 4 3 2 6 6 H 1.07994 * 119.99881 * 180.61188 * 5 4 3 7 7 C 1.39038 * 119.99911 * 0.61777 * 5 4 3 8 8 N 1.31361 * 120.00432 * 9.88023 * 7 5 4 9 9 Si 1.86806 * 119.99914 * 189.88191 * 7 5 4 10 10 H 1.48502 * 109.46970 * 89.99698 * 9 7 5 11 11 H 1.48494 * 109.47330 * 209.99797 * 9 7 5 12 12 H 1.48503 * 109.46934 * 329.99940 * 9 7 5 13 13 C 1.34778 * 119.99896 * 98.58183 * 4 3 2 14 14 O 1.21599 * 119.99767 * 186.36699 * 13 4 3 15 15 C 1.47671 * 120.00045 * 6.37540 * 13 4 3 16 16 C 1.39698 * 120.13410 * 315.08854 * 15 13 4 17 17 C 1.37858 * 119.85926 * 179.97438 * 16 15 13 18 18 C 1.38552 * 120.13610 * 0.02562 * 17 16 15 19 19 Cl 1.73604 * 119.86042 * 180.26905 * 18 17 16 20 20 C 1.38512 * 120.27831 * 0.02562 * 18 17 16 21 21 C 1.50693 * 119.93123 * 179.97438 * 20 18 17 22 22 C 1.37897 * 120.13462 * 359.97301 * 20 18 17 23 23 H 1.09002 * 109.47216 * 59.99770 * 1 2 3 24 24 H 1.08999 * 109.47686 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46844 * 300.00245 * 1 2 3 26 26 H 1.08999 * 109.46983 * 239.99420 * 2 1 3 27 27 H 1.09008 * 109.46554 * 120.00100 * 2 1 3 28 28 H 1.09003 * 109.47132 * 65.72068 * 3 2 1 29 29 H 1.09002 * 109.47274 * 305.71563 * 3 2 1 30 30 H 0.96999 * 120.00608 * 180.02562 * 8 7 5 31 31 H 1.07996 * 120.07183 * 0.02562 * 16 15 13 32 32 H 1.07996 * 119.93322 * 180.02562 * 17 16 15 33 33 H 1.09003 * 109.47236 * 89.99500 * 21 20 18 34 34 H 1.09003 * 109.47487 * 209.99703 * 21 20 18 35 35 H 1.09005 * 109.47131 * 329.99582 * 21 20 18 36 36 H 1.07999 * 120.06778 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.4986 1.4447 -0.1376 5 6 4.2898 1.2299 0.9585 6 1 5.3650 1.2414 0.8589 7 6 3.7090 0.9967 2.2001 8 7 2.4151 0.7895 2.2916 9 14 4.7688 0.9783 3.7383 10 1 4.8408 2.3485 4.3063 11 1 4.1723 0.0581 4.7395 12 1 6.1361 0.5137 3.3918 13 6 4.0613 1.6582 -1.3436 14 8 5.2642 1.5458 -1.4816 15 6 3.2171 2.0287 -2.4971 16 6 2.0220 1.3470 -2.7392 17 6 1.2380 1.6980 -3.8175 18 6 1.6335 2.7239 -4.6605 19 17 0.6372 3.1646 -6.0122 20 6 2.8179 3.4029 -4.4263 21 6 3.2407 4.5172 -5.3485 22 6 3.6108 3.0613 -3.3511 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5139 0.8901 28 1 1.7627 1.9258 0.9368 29 1 1.5955 1.9850 -0.8344 30 1 2.0098 0.6272 3.1578 31 1 1.7125 0.5474 -2.0826 32 1 0.3137 1.1721 -4.0056 33 1 2.8387 5.4626 -4.9843 34 1 4.3290 4.5720 -5.3770 35 1 2.8604 4.3229 -6.3514 36 1 4.5338 3.5916 -3.1693 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000123448136.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:54 Heat of formation + Delta-G solvation = -0.480551 kcal Electronic energy + Delta-G solvation = -20135.308298 eV Core-core repulsion = 17032.089137 eV Total energy + Delta-G solvation = -3103.219161 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 281.092 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.77077 -37.97619 -36.21323 -35.52369 -33.02743 -32.01027 -31.48978 -30.40625 -26.91405 -25.87488 -24.83986 -22.76498 -21.58404 -20.73191 -19.24582 -17.03646 -16.66829 -16.33131 -15.42224 -14.87318 -14.27326 -14.20751 -13.93101 -13.82544 -13.52961 -13.05226 -12.67870 -12.40648 -12.32244 -12.03960 -11.83178 -11.78059 -11.46600 -11.22237 -11.11089 -10.99717 -10.74838 -10.51723 -10.41033 -10.33244 -10.10042 -9.88000 -8.90281 -8.65487 -8.53855 -8.19008 -7.83878 -6.32400 -3.89722 1.23401 1.56140 2.27308 3.08686 3.19070 3.24163 3.56372 3.99181 4.18124 4.71189 4.94003 4.98263 5.07837 5.34714 5.52199 5.60183 5.68178 5.78049 5.80925 5.94540 5.99718 6.07259 6.21059 6.25805 6.38808 6.46736 6.55011 6.63078 6.78324 6.85211 6.91755 7.05109 7.30434 7.52603 7.74405 7.96719 8.42062 9.06252 9.30973 9.86686 10.52240 Molecular weight = 281.09amu Principal moments of inertia in cm(-1) A = 0.025876 B = 0.005125 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.839364 B = 5462.301879 C = 6285.565207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.126 4.126 3 C 0.110 3.890 4 N -0.426 5.426 5 C -0.290 4.290 6 H 0.107 0.893 7 C 0.023 3.977 8 N -0.868 5.868 9 Si 0.934 3.066 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.464 3.536 14 O -0.592 6.592 15 C -0.077 4.077 16 C -0.104 4.104 17 C -0.115 4.115 18 C -0.038 4.038 19 Cl -0.083 7.083 20 C -0.086 4.086 21 C -0.114 4.114 22 C -0.074 4.074 23 H 0.037 0.963 24 H 0.040 0.960 25 H 0.055 0.945 26 H 0.029 0.971 27 H 0.109 0.891 28 H 0.118 0.882 29 H 0.040 0.960 30 H 0.267 0.733 31 H 0.152 0.848 32 H 0.131 0.869 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.322 3.279 -8.764 11.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.164 4.164 3 C -0.013 4.013 4 N -0.141 5.141 5 C -0.418 4.418 6 H 0.125 0.875 7 C -0.178 4.178 8 N -0.509 5.509 9 Si 0.760 3.240 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.194 1.194 13 C 0.254 3.746 14 O -0.479 6.479 15 C -0.081 4.081 16 C -0.123 4.123 17 C -0.134 4.134 18 C -0.065 4.065 19 Cl -0.054 7.054 20 C -0.087 4.087 21 C -0.171 4.171 22 C -0.093 4.093 23 H 0.056 0.944 24 H 0.059 0.941 25 H 0.074 0.926 26 H 0.047 0.953 27 H 0.127 0.873 28 H 0.135 0.865 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.169 0.831 32 H 0.149 0.851 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.950 3.215 -8.722 11.037 hybrid contribution 0.091 -0.078 0.637 0.649 sum -5.859 3.136 -8.085 10.465 Atomic orbital electron populations 1.21638 0.97301 1.00058 1.00740 1.22125 0.93824 0.98286 1.02136 1.22137 0.79617 0.97212 1.02344 1.43804 1.06346 1.57781 1.06176 1.19906 0.92363 1.44637 0.84898 0.87517 1.25329 0.96451 0.96619 0.99424 1.70101 1.09718 1.46286 1.24805 0.85792 0.79762 0.78192 0.80236 1.20303 1.20826 1.19406 1.17754 0.87554 0.86621 0.82706 1.90620 1.14685 1.58738 1.83860 1.20380 0.94874 0.96094 0.96773 1.22018 0.93219 1.00422 0.96596 1.20913 1.00763 0.96998 0.94679 1.20843 0.93788 0.99652 0.92188 1.98321 1.69217 1.92611 1.45281 1.19601 0.93568 0.98323 0.97224 1.20819 1.01955 0.96058 0.98271 1.21000 0.99192 0.96313 0.92788 0.94412 0.94050 0.92563 0.95250 0.87318 0.86463 0.94154 0.92169 0.83064 0.85127 0.90964 0.91163 0.91106 0.84824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.87 37.16 0.37 -1.91 16 2 C -0.13 -2.52 4.67 -26.74 -0.12 -2.65 16 3 C 0.11 2.39 4.16 -4.04 -0.02 2.37 16 4 N -0.43 -10.64 2.64 -115.95 -0.31 -10.94 16 5 C -0.29 -7.72 9.50 -15.00 -0.14 -7.86 16 6 H 0.11 3.01 7.19 -52.49 -0.38 2.63 16 7 C 0.02 0.57 5.33 -17.46 -0.09 0.48 16 8 N -0.87 -20.58 7.19 55.50 0.40 -20.18 16 9 Si 0.93 19.71 29.57 -169.99 -5.03 14.69 16 10 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 11 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 12 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 13 C 0.46 11.55 7.23 -12.41 -0.09 11.46 16 14 O -0.59 -16.70 16.58 5.28 0.09 -16.61 16 15 C -0.08 -1.58 5.13 -104.97 -0.54 -2.12 16 16 C -0.10 -1.85 7.38 -39.18 -0.29 -2.14 16 17 C -0.11 -1.75 9.81 -39.60 -0.39 -2.14 16 18 C -0.04 -0.56 6.32 -39.36 -0.25 -0.81 16 19 Cl -0.08 -1.05 27.27 -51.86 -1.41 -2.46 16 20 C -0.09 -1.32 5.88 -104.65 -0.62 -1.93 16 21 C -0.11 -1.37 9.60 36.00 0.35 -1.02 16 22 C -0.07 -1.32 9.33 -39.18 -0.37 -1.69 16 23 H 0.04 0.55 8.13 -51.93 -0.42 0.13 16 24 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.03 0.58 6.33 -51.93 -0.33 0.26 16 27 H 0.11 2.49 5.88 -51.92 -0.31 2.18 16 28 H 0.12 2.76 5.79 -51.93 -0.30 2.46 16 29 H 0.04 0.81 4.93 -51.93 -0.26 0.55 16 30 H 0.27 6.04 8.31 -40.82 -0.34 5.70 16 31 H 0.15 2.71 3.66 -52.49 -0.19 2.51 16 32 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 35 H 0.07 0.78 6.89 -51.93 -0.36 0.42 16 36 H 0.13 2.36 8.06 -52.49 -0.42 1.94 16 LS Contribution 304.51 15.07 4.59 4.59 Total: -1.00 -27.65 304.51 -8.08 -35.73 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -4.21 Total: 5.16 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -2.20 Total: -9.96 kcal Atomic # 7 Polarization: -31.22 SS G_CDS: 0.09 Total: -31.12 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: 0.09 Total: -16.61 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.03 Total: 14.69 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -1.41 Total: -2.46 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.65 -8.08 -35.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000123448136.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.245 kcal (2) G-P(sol) polarization free energy of solvation -27.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds